@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 487_tVI_POPTR: (2014-05-09 )
ALSAAQCKEERRLGLNACKPVIYGKLPSPACCERVRVSHVECVCPVITPKLAALIDLDRAIRLIEGCGRRVPRHFKCGSITTP
Atome Classification :
(20 SA)
-----------------------------------------------.........10.--.--......20------..-.-----.-----.---------.----------..----------30.-......------.----------40---------.---.......-.50..-.--.--.-------------.---------...----60........70.----.......-80--...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------AL
S
A
A
Q
C
K
E
E
R
R--L--
G
L
N
ACK
P
V
------
I
Y-G-----K-----L---------P----------
S
P
----------
A
C
C
-
E
R
V
R
VS------
H
----------
V
----------
E
---
C
VCPVI
T
-
P
K
-
L
A
-
A
--
L
--
I
-------------
D
---------
L
D
R
----
A
I
R
L
I
E
G
C
G
R
RVP----
R
H
FKCGS-I---TTP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
86.53
24%
-95
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
----------------------------------------------------
S
C
G
Q
V
A
S
--
A
--
I
-
A
P
C
I
S
Y
------
A
R
-
G
-----
Q
G----
S
G--------
P
----------
S
A
----------
G
C
C
-
S
G
V
R
S
L
------
N
----------
N
A
A
RT
T
A
D
R
R
A
A
---
C
N
C
--
L
K
-
N
A
-
A
A
-
G
VS
G
--
L
-------------
N
---------
A
G
N
----
A
A
S
I
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
-
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
86.26
24%
-92
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
----------------------------------------------------
T
C
G
Q
V
T
S
--
N
--
L
-
A
P
C
L
A
Y
------
L
R
-
N
-----
T
-----
G
---------
P
----------
L
G
----------
R
C
C
-
G
G
V
K
A
L
------
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
---
C
T
C
--
L
K
-
S
A
-
A
G
-
A
--
I
SG
I
-------------
N
---------
L
G
K
----
A
A
G
L
P
S
T
C
G
V
N
I
P
YKIS
P
S
T
D
C
S
K
-
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
83.10
25%
-100
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
----------------------------------------------------
T
C
G
Q
V
S
S
--
S
--
L
-
A
P
C
I
P
Y
------
V
R
-
G
G----
G
-----
A
---------
V
----------
P
P
----------
A
C
C
-
N
G
I
R
N
V
------
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
---
C
N
C
--
L
K
-
Q
L
-
S
A
-
S
VP
G
--
V
-------------
N
---------
P
N
N
----
A
A
A
L
P
G
K
C
G
V
S
I
P
YKIS
A
S
T
N
C
A
T
-
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
82.73
25%
-79
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
----------------------------------------------------
D
C
G
H
V
D
S
--
L
--
V
-
R
P
C
L
S
Y
------
V
Q
-
G
G----
P
-----
G
---------
P
----------
S
G
----------
Q
C
C
-
D
G
V
K
N
L
------
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
---
C
N
C
L
K
G
I
-
A
R
-
G
I
-
H
--
N
--
L
-------------
N
---------
E
D
N
----
A
R
S
I
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
82.59
25%
-123
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------
A
I
D
L
C
G
M
S
-
Q
--
D
--
E
L
N
E
C
K
P
A
------
V
S
-
K
ENP--
T
-----
S
---------
P
----------
S
Q
----------
P
C
C
-
T
A
L
Q
H
A
------
D
----------
F
----------
A
---
C
L
C
G
Y
K
N
-
S
P
-
W
L
-
G
--
S
F
G
V
-------------
D
---------
P
E
L
----
A
S
A
L
P
K
Q
C
G
L
A
N
A
------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
78.61
30%
-136
- C3 -
1N89
1
NLT2G_WHEAT
A:
[7-65]
-----------------------------------------------------------------
L
A
V
C
A
S
A
------
I
L
-
S
G----
A
-----
K
---------
P
----------
S
G
----------
E
C
C
-
G
N
L
R
A
Q
------
Q
---------------------
G
---
C
F
C
Q
Y
A
K
D
P
T
-
Y
G
-
Q
--
Y
--
I
-------------
R
---------
S
P
H
----
A
R
D
T
L
T
S
C
G
L
A
V
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
78.61
25%
-97
- C3 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
--------------------------------------------------
I
D
L
C
G
M
S
Q
D
--
E
--
L
-
N
E
C
K
P
A
------
V
S
-
K
-----
E
NPT--
S
---------
P
----------
S
Q
----------
P
C
C
-
T
A
L
Q
H
A
------
D
----------
F
----------
A
---
C
L
C
G
Y
K
N
-
S
P
W
L
G
S
F
--
G
--
V
-------------
D
---------
P
E
L
----
A
S
A
L
P
K
Q
C
G
L
A
N
A
----
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
76.83
25%
-92
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
----------------------------------------------------
T
C
G
Q
V
Q
G
--
N
--
L
-
A
Q
C
I
G
F
------
L
Q
-
K
G----
G
-----
V
---------
V
----------
P
P
----------
S
C
C
-
T
G
V
K
N
I
------
L
----------
N
SSRTTADR
R
A
V
---
C
S
C
L
K
A
---
A
-
A
G
-
A
VR
G
--
I
-------------
N
---------
P
N
N
----
A
E
A
L
P
G
K
C
G
V
N
I
P
YKIS
T
S
T
N
C
N
S
-
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
76.74
23%
-107
* C3 *
1SM7
-
?
A:
[3-103]
---------------------------------------------------
Q
K
C
Q
R
E
F
Q
--
Q
E
Q
H
L
R
A
C
Q
Q
W
------
I
R
-
Q
QLAG-
S
-----
P
F
S
E
NQWG--
P
QQGPS
L
----
R
E
----------
Q
C
C
-
N
E
L
Y
Q
E
------
D
----------
Q
----------
V
---
C
V
C
P
T
L
K
-
Q
A
-
A
K
-
S
--
V
--
R
VQGQHGPFQST
R
-
I
---------
Y
Q
I
----
A
K
N
L
P
N
V
C
N
M
K
Q
I
----
G
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
73.51
26%
-114
- C3 -
2DS2
-
?
B:
[7-69]
------------------------------------------------------------------------------------------------------------------
L
R
----------
Q
C
C
-
N
Q
L
R
Q
V
------
D
----------
R
----------
P
---
C
V
C
P
V
L
R
-
Q
A
-
A
Q
-
Q
--
V
--
L
Q
R
Q
IIQG
P
Q
Q
L
R
R
L
---------
F
D
A
----
A
R
N
L
P
N
I
C
N
I
P
N
I
----
G
A
--
C
P
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
72.53
16%
-88
- C3 -
2LVF
-
?
A:
[4-101]
-------------------------------------------------
A
Q
E
E
C
R
E
Q
M
Q
R
Q
Q
--
M
L
S
H
C
R
M
Y
------
M
R
-
Q
Q
M
E
E
S
T
-----
Y
---------
Q
TMPRRGMEP
H
M
S
----------
E
C
C
-
E
Q
L
E
G
M
------
D
----------
E
----------
S
---
C
R
C
E
G
L
R
-
M
M
-
M
R
-
M
--
M
--
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
---------
M
R
L
----
A
E
N
I
P
S
R
C
N
L
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
71.04
23%
-98
- C5 -
2RAQ
-
?
A:
[3-95]
-----------------------------------------------------
A
K
G
L
I
R
--
I
--
V
L
D
I
L
K
P
H
EPI
I
P
E
Y
A
-
K
-----
Y
-----
L
---------
S
----------
E
L
----------
R
G
V
-
E
G
V
N
I
T
L
MEIDK
E
----------
T
----------
E
---
N
I
K
V
T
I
Q
-
G
N
-
D
L
-
D
--
F
--
D
-------------
E
---------
I
T
R
----
A
I
E
S
Y
G
G
S
I
H
S
V
D
----
E
V
V
A
G
R
T
M
V
E
E
V
T
T
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
67.50
21%
-74
- C3 -
1S6D
-
2SS8_HELAN
A:
[9-97]
---------------------------------------------------
S
G
C
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
C
G
M
Y
------
L
M
-
K
-----
N
LGERS
Q
VSPR
M
R
E
E
D
H
----------
K
Q
----------
L
C
C
-
M
Q
L
K
N
L
------
D
----------
E
----------
K
---
C
M
C
P
A
I
M
-
M
M
-
L
N
-
E
--
P
--
M
WIRMR
D
Q
------
V
---------
M
S
M
----
A
H
N
L
P
I
E
C
N
L
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
66.79
19%
-61
- C3 -
1DQA
6
HMDH_HUMAN
A:
[41-449]
LS
D
A
E
I
I
Q
L
V
N
A
K
HIPAYK
L
E
T
L
I
ET
H
E
R
G
V
S
I
R
R
Q
L
L
S
K
K
LSEPSS
L
Q
Y
L
P
Y
R
D
Y
N
Y
S
--
L
--
V
M
G
A
C
C
E
N
------
V
I
-
G
-----
Y
-----
M
---------
P
----------
I
P
----------
V
G
V
A
G
P
L
C
L
D
------
E
----------
K
----------
E
---
F
Q
V
P
M
A
T
-
T
E
-
G
C
-
L
--
V
--
A
-------------
S
---------
T
N
R
----
G
C
R
A
I
G
L
G
G
G
A
S
S
----
R
V
L
A
D
G
M
-
T
---
R
G
P
V
V
R
L
PR
A
C
D
S
A
E
V
K
A
W
L
E
T
S
E
G
F
A
V
I
K
E
A
F
D
STSRFARLQ
K
L
H
T
S
I
AGR
N
L
Y
I
R
F
Q
S
R
S
GDAMG
M
N
M
I
S
K
G
T
E
K
A
L
S
K
L
H
E
Y
F
PEMQILAVSGNYCTDKKPA
A
I
N
W
I
EGRG
K
S
V
V
C
E
A
V
I
P
A
K
V
V
R
EVLKTT
T
E
A
M
I
E
V
N
I
N
K
NL
V
G
S
A
M
A
GSIGGYNAH
A
A
N
I
V
T
A
I
Y
I
A
C
GQDAAQNVGSS
N
C
I
T
L
M
E
A
S
G
PTNE
D
L
Y
I
S
C
T
M
PSIEIGTVGGGTNL
L
P
Q
Q
A
C
L
Q
M
L
GVQGACKDNPG
E
N
A
R
Q
L
A
R
I
V
C
G
T
V
M
A
G
E
L
S
L
M
A
A
L
A
A
GH
L
V
K
S
H
M
I
HN
29
HHSearch
66.71
15%
-147
- C3 -
1HSS
-
IAA1_WHEAT
A:
[38-106]
------------------------------------------------------------------------------------------------------------------
L
R
----------
D
C
C
-
Q
Q
L
A
H
I
------
S
----------
E
----------
W
---
C
R
C
G
A
L
Y
-
S
M
-
L
D
-
S
--
M
--
Y
K
E
HG---------
A
FPRCR
R
E
V
V
K
L
T
----
A
A
S
I
T
A
V
C
R
L
P
I
V
----
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
66.68
28%
-62
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------
A
G
C
N
A
G
Q
-------
L
T
V
C
T
G
A
------
I
A
G
G
-----
A
-----
R
---------
P
----------
T
A
----------
A
C
C
-
S
S
L
R
-
A
------
Q
----------
Q
----------
G
---
C
F
C
Q
F
A
K
D
P
R
-
Y
G
-
R
--
Y
--
V
-------------
N
---------
S
P
N
----
A
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
64.02
28%
-89
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[8-69]
-----------------------------------------------------------------
L
T
V
C
T
G
A
------
I
A
-
G
G----
A
-----
R
---------
P
----------
T
A
----------
A
C
C
-
S
S
L
R
A
Q
-----------------
Q
----------
G
---
C
F
C
Q
F
A
K
D
P
R
-
Y
G
-
R
--
Y
--
V
-------------
N
---------
S
P
N
----
A
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
60.03
24%
-132
- C3 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
------------------------------------------------------------------------------------------------------------------
V
D
----------
D
C
C
-
A
L
I
G
G
L
G-----
D
----------
I
----------
E
A
I
V
C
L
C
I
Q
L
R
-
A
---
L
-
G
--
I
--
L
-------------
N
---------
L
N
R
N
---
L
Q
L
I
L
N
S
C
G
R
S
Y
P
----
S
N
A
T
C
P
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
57.84
22%
-9
- C4 -
3M8E
-
?
A:
[-15-102]
---------------------------------------------FY
T
L
N
I
A
E
I
A
E
--
R
--
I
--
G
N
D
D
C
A
Y
Q
------
V
L
-
M
-----
A
-----
F
---------
I
----------
N
E
NG
E
A
Q
M
L
N
K
T
A
V
A
-
E
M
I
Q
L
S
------
K
----------
P
----------
T
---
V
F
A
T
V
N
S
-
F
Y
-
C
A
-
G
--
Y
--
I
-------------
D
---------
E
T
R
V
GR
S
K
I
Y
T
L
S
D
L
G
V
E
I
V
----
E
C
F
K
Q
K
A
-
M
---
E
M
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
55.34
29%
-100
- C3 -
1PSY
-
2SS_RICCO
A:
[64-116]
-------------------------------------------------------------------------------------------------------------------
Q
----------
Q
C
C
-
N
Q
V
K
Q
V
------
R
----------
D
----------
E
---
C
Q
C
E
A
I
K
-
Y
I
-
A
E
-
D
--
Q
--
I
Q
Q
G
QLHGEE
S
E
R
-
V
---------
A
Q
R
----
A
G
E
I
V
S
S
C
G
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AL
S
A
A
Q
C
K
E
E
R
RL
G
L
N
ACK
P
V
I
YGKLP
S
P
A
C
C
E
R
V
R
VS
H
V
E
C
VCPVI
T
P
K
L
A
A
L
I
D
L
D
R
A
I
R
L
I
E
G
C
G
R
RVP
R
H
FKCGSITTP
39
57.80
100%
-7
- C- -
M039
-
A:
[3-107]
A
L
S
A
A
Q
C
K
E
E
R
R
L
G
L
N
A
C
K
P
V
I
Y
G
K
L
P
S
P
A
C
C
E
R
V
R
V
S
H
V
E
C
V
C
P
V
I
T
P
K
L
A
A
L
I
D
L
D
R
A
I
R
L
I
E
G
C
G
R
R
V
P
R
H
F
K
C
G
S
I
T
T
P
40
47.89
100%
-6
- C- -
M040
-
A:
[3-107]
A
L
S
A
A
Q
C
K
E
E
R
R
L
G
L
N
A
C
K
P
V
I
Y
G
K
L
P
S
P
A
C
C
E
R
V
R
V
S
H
V
E
C
V
C
P
V
I
T
P
K
L
A
A
L
I
D
L
D
R
A
I
R
L
I
E
G
C
G
R
R
V
P
R
H
F
K
C
G
S
I
T
T
P