@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 495_tII_RICCO: (2014-05-09 )
MVCSPTYSVSSCQSALTMTVLPSSLCCRKTMEERQCFCQYIRDPNLKQFYSNIVVRRNANACGLPFPVCGYQI
Atome Classification :
(20 SA)
------------------------------------------------------------------...-.-.-----.-...10.....--.-..--20-.-...-------------....---------.30---.-----------.-----.-.-----...------.40..------.--.------------....--------50....-....60....-.-------.----------.---------.-------70..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------MVC-S-P-----T-Y
S
V
S
S
C
Q
S
A
L
--
T
-
M
T--V--L-
P
S
S
-------------
L
C
C
R
---------
K
T
M
---
E
-----------
E
-----
R
-
Q
-----
C
F
C
------
Q
Y
IRD------P--
N
------------
L
K
Q
F
--------
Y
S
N
I
V
V
-RRNANACGLP-F-------P----------V---------C-------GYQI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
83.20
33%
-77
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-------------------------------------------------------------------
A
C
-
Q
-
A
-------
S
Q
L
A
V
C
A
S
A
I
--
L
-
S
G
--
A
--
K
-
P
S
G
-------------
E
C
C
G
---------
N
L
R
---
A
-----------
Q
-----
Q
-
G
-----
C
F
C
------
Q
Y
A
K
D
------
P
--
T
------------
Y
G
Q
Y
--------
I
R
S
P
H
A
-
R
D
T
L
T
S
C
G
L
A
-
V
-------
P
----------
H
---------
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
81.97
24%
-117
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------
A
G
C
-
N
-
A
-----
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
G
--
A
--
R
-
P
T
A
-------------
A
C
C
S
---------
S
L
R
---
A
-----------
Q
-----
Q
-
G
-----
C
F
C
------
Q
F
A
K
D
------
P
--
R
------------
Y
G
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
-------
P
----------
T
---------
C
-------
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
81.73
25%
-117
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------
A
G
C
-
N
-
A
-------
G
Q
L
T
V
C
T
G
A
I
--
A
-
G
G
--
A
--
R
-
P
T
A
-------------
A
C
C
S
---------
S
L
R
---
A
-----------
Q
-----
Q
-
G
-----
C
F
C
------
Q
F
A
K
D
------
P
--
R
------------
Y
G
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
-------
P
----------
T
---------
C
-------
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
81.31
23%
-117
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------
A
G
C
-
N
-
A
-----
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
G
--
A
--
R
-
P
T
A
-------------
A
C
C
S
---------
S
L
R
---
A
-----------
Q
-----
Q
-
G
-----
C
F
C
------
Q
F
A
K
D
------
P
--
R
------------
Y
G
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
A
-
L
-------
P
----------
T
---------
C
-------
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
76.04
22%
-92
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------
I
D
C
-
G
-
H
V
----
D
-
S
L
V
R
P
C
L
S
Y
V
--
Q
G
G
P
-----
G
-
P
S
G
-------------
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
---
S
-----------
D
-----
R
-
Q
-----
S
A
C
------
N
C
L
K
G
------
I
A
R
G
------------
I
H
N
L
--------
N
-
E
D
N
A
-
R
S
I
P
P
K
C
G
---
V
-------
N
----------
L
P
Y
T
I
S
LNID
C
-------
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
73.58
24%
-94
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------AI
D
L
C
-
G
M
S
-----
Q
-
D
E
L
N
E
C
K
P
A
V
--
S
-
K
E
NP
T
--
S
-
P
S
Q
-------------
P
C
C
T
---------
A
L
Q
---
H
A----------
D
-----
F
-
A
-----
C
L
C
------
G
Y
K
N
S
------
P
--
W
------------
L
G
S
F
G-------
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
-------
A
----------
P
T--------
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
66.10
25%
-97
- C3 -
2RKN
2
DIRL1_ARATH
A:
[10-77]
--------------------------------------------------------------------------------
D
E
L
N
E
C
K
P
A
V
--
S
-
K
E
--
N
PT
S
-
P
S
Q
-------------
P
C
C
T
---------
A
L
Q
---
H
-----------
A
-----
D
F
A
-----
C
L
C
------
G
Y
K
N
S
------
P
--
W
------------
L
G
S
F
G-------
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
-
N
-------
A
P---------
T
---------
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
62.01
13%
-73
- C3 -
1XPJ
1
?
A:
[1-124]
---------------------------------------------------------------MKK
L
I
V
-
D
-
L
-----
D
-
G
T
L
T
Q
A
N
T
S
D
--
Y
-
R
N
--
V
--
L
-
P
R
L
-------------
D
V
I
E
---------
Q
L
R
---
E
-----------
Y
-----
H
-
Q
L
G
F
E
I
V
I
S
T
ARNMR
T
Y
E
G
N
------
V
--
G
------------
K
I
N
I
--------
H
T
L
P
I
I
-
T
E
W
L
D
K
H
Q
V
P
-
Y
D
E
I
L
V
GK
P
----------
W
---------
C
-------
G
H
D
G
F
Y
I
D
DRAVR
P
S
E
F
A
S
MN
L
E
E
I
H
Q
L
F
E
K
E
K
S-----------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
57.64
19%
-71
- C3 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
--------------------------------------------------------------------------------
S
N
L
A
P
C
L
A
Y
L
--
R
-
N
T
--
G
----
P
L
G
-------------
R
C
C
G
---------
G
V
K
---
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
-----
C
T
C
--------
L
K
S
------
A
--
A
-------------
G
A
I
SG------
I
N
L
G
K
A
-
A
G
L
P
S
T
C
G
V
N
-
I
-------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
57.31
17%
-66
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------A
I
S
C
G
Q
-
V
-----
A
-
S
A
I
A
P
C
I
S
Y
A
--
R
-
G
Q
--
G
--
S
G
P
S
A
-------------
G
C
C
S
---------
G
V
R
---
S
-----------
L
-----
N
-
N
-----
A
----------
A
R
T
------
T
--
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
-------
P
-----------------------------
Y
T
I
STSTDCSRVN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
56.55
22%
-54
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[8-78]
--------------------------------------------------------------------------------
S
L
V
R
P
C
L
S
Y
V
--
Q
-
G
G
--
P
--
G
-
P
S
G
-------------
Q
C
C
D
---------
G
V
K
---
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
-----
C
N
C
------
L
K
G
I
A
------
R
--
G
------------
I
H
-
N
--------
L
N
E
D
N
A
-
R
S
I
P
P
K
C
G
V
N
-
L
-------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
55.95
16%
-58
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-------------------------------------------------------------------
T
C
-
G
-
Q
-----
V
S
S
S
L
A
P
C
I
P
Y
V
--
R
-
G
G
--
G
--
A
-
V
P
P
-------------
A
C
C
N
---------
G
I
R
---
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
-----
C
N
C
--------
L
K
Q
------
L
--
S
-------------
A
S
V
PG------
V
N
P
N
N
A
-
A
A
L
P
G
K
C
G
V
S
-
I
-------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
55.93
16%
-110
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
-
E
-
E
-----
A
-
E
M
L
N
H
C
G
M
Y
L
--
M
-
K
N
--
L
--
G
-
E
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
---------
Q
L
K
---
N
L----------
D
-----
E
-
K
-----
C
M
C
------
P
A
I
M
M
M
L
N
EPM
W
--
I
------------
R
M
R
D
--------
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
-
S
-------
Q
----------
P
---------
C
-------
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
55.53
23%
-83
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
---------------------------------------------------------------------------------
D
L
S
I
C
L
N
I
L
GG
S
-
L
G
--
T
-----
V
D
-------------
D
C
C
A
---------
L
I
G
---
G
-----------
L
G
D
I
E
A
I
-
V
-----
C
L
C
------
I
Q
L
R
A
----------------------
L
G
I
---------
L
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
-
Y
-------
P
----------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
54.50
10%
-54
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
A
-
G
-
T
-----
L
-
T
L
L
P
V
A
L
R
A
P
--
V
-
T
A
--
G
--
Q
-
L
A
V
-------------
E
N
G
H
---------
Y
V
V
---
E
-----------
T
-----
L
-
A
-----
R
A
C
------
D
G
C
L
N
------
G
--
E
------------
F
A
A
L
--------
I
T
G
P
V
H
-
K
G
V
I
N
D
A
G
I
P
-
F
-------
T
G
H
T
E
F
F
E
E
R
S
Q
---------
A
-------
K
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
17
HHSearch
54.08
19%
-64
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-------------------------------------------------------------------
S
C
-
G
-
Q
-----
V
A
S
A
I
A
P
C
I
S
Y
A
--
R
-
G
Q
--
G
--
S
G
P
S
A
-------------
G
C
C
S
---------
G
V
R
---
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
-----
C
N
C
--------
L
K
N
------
A
--
A
-------------
A
G
V
SG------
L
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
S
-
I
-------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
51.26
17%
-55
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-78]
------------------------------------------------------------------
M
T
C
-
G
-
Q
-----
V
Q
G
N
L
A
Q
C
I
G
F
L
--
Q
-
K
G
--
G
--
V
-
V
P
P
-------------
S
C
C
T
---------
G
V
K
---
N
I
L
NSSRTTADR
R
-----
A
-
V
-----
C
S
C
------
L
K
A
A
A
------
G
--
A
------------
V
R
-
G
--------
I
N
P
N
N
A
-
E
A
L
P
G
K
C
G
V
N
-
I
-------
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
48.73
16%
-53
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
---------------------------------------------------------------PRG
S
A
L
-
S
-
D
-----
T
-
E
R
A
Q
--
L
D
V
M
--
K
-
L
L
--
N
--
V
-
S
L
H
-------------
E
M
S
R
---------
K
I
S
---
R
-----------
S
-----
R
-
H
-----
C
I
R
------
V
Y
L
K
D
------
P
V-
S
------------
Y
G
T
S
KRAPRRKA
L
S
V
R
D
E
-
R
N
V
I
R
A
A
S
N
S
-
C
-------
K
----------
T
---------
A
R
D
I
R
N
E
L
Q
L
S
A
S
K
R
T
I
L
N
V
I
K
R
S
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
45.36
6%
-92
- C3 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
----------------------------------------------------------MEAIVG
K
V
T
E
V
-
N
-
K
DT
F
W
P
I
-
V
K
A
A
G
D
K
P
V
V
--
L
-
D
M
--
F
--
T
-
Q
W
----------------
C
G
---------
P
C
K
---
A
-----------
M
-----
A
-
P
-----
K
Y
E
------
K
L
A
E
E
Y
-----
L
--
D
V
I
----------
F
L
K
L
--------
D
C
N
Q
E
N
-
K
T
L
A
K
E
L
G
I
R
V
V
-------
P
----------
T
---------
F
K
I
L
K
E--
N
S
V
V
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S---------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
44.69
19%
-44
* C3 *
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------
P
-----
S
C
P
D
L
S
I
C
L
N
I
L
--
G
-
G
S
--
L
--
G
-
T
V
D
-------------
D
C
C
A
---------
L
I
G
G
LG
D
-----------
I
-----
E
-
A
-----
I
V
C
------
L
C
I
Q
L
------
R
--
A
------------
L
G
I
L
--------
N
L
N
R
N
L
-
Q
L
I
L
N
S
C
G
R
S
-
Y
-------
P
----------
S
-----------------
N
A
T
C
PRT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60........70..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MVCSPTY
S
V
S
S
C
Q
S
A
L
T
M
TVL
P
S
S
L
C
C
R
K
T
M
E
E
R
Q
C
F
C
Q
Y
IRDP
N
L
K
Q
F
Y
S
N
I
V
V
RRNANACGLPFPVCGYQI
42
90.12
100%
-123
- C- -
M042
-
A:
[1-134]
M
V
C
S
P
T
Y
S
V
S
S
C
Q
S
A
L
T
M
T
V
L
P
S
S
L
C
C
R
K
T
M
E
E
R
Q
C
F
C
Q
Y
I
R
D
P
N
L
K
Q
F
Y
S
N
I
V
V
R
R
N
A
N
A
C
G
L
P
F
P
V
C
G
Y
Q
I