@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

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Complexes Modeling
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Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : 537_tII_MEDTR: (2014-05-10 )
VTCSPVQLSSCVSAITSSTPPSNLCCSKIKEQRPCLCQYMKNPNLRKFVNTPNARKVANTCGTPFPRC

Atome Classification :

(20 SA) ----------------------------------------------------------------...--.--.--.--..---.10....--.-..--.--20.-----........30-----------.-----.-.-----------.....40.------.-.------------....--------.-----50...-.....60..-.-..---------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ----------------------------------------------------------------VTC--S--P--V--QL---SSCVSAI--T-SS--T--P-P-----SNLCCSKIKE-----------Q-----R-P-----------CLCQYMKN------P-N------------LRKF--------V-----NTPNA-RKVANTCGT-P-FP---------RC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 HHSearch 91.8839% -98 - C4 -1N89 NLT2G_WHEAT A:[1-67] -----------------------------------------------------------------AC--Q--A--S--QL---AVCASAI--L-SG--A--K-P-----SGECCGNLRA-----------Q-----Q-G-----------CFCQYAKD------P-T------------YGQY--------I-----RSPHA-RDTLTSCGL-A-VP---------HC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2 HHSearch 90.3140%-104 - C4 -1L6H - NLTPX_ORYSJ A:[1-68] ----------------------------------------------------------------AGC--N--A--G--QL---TVCTGAI--A-GG--A--R-P-----TAACCSSLRA-----------Q-----Q-G-----------CFCQFAKD------P-R------------YGRY--------V-----NSPNA-RKAVSSCGI-A-LP---------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24 SP3 89.7539%-104 - C4 -1L6H - NLTPX_ORYSJ A:[1-69] ----------------------------------------------------------------AGC--N--A--G--QL---TVCTGAI--A-GG--A--R-P-----TAACCSSLRA-----------Q-----Q-G-----------CFCQFAKD------P-R------------YGRY--------V-----NSPNA-RKAVSSCGI-A-LP---------TCH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15 Fugue 89.7539%-104 - C4 -1L6H - NLTPX_ORYSJ A:[1-69] ----------------------------------------------------------------AGC--N--A--G--QL---TVCTGAI--A-GG--A--R-P-----TAACCSSLRA-----------Q-----Q-G-----------CFCQFAKD------P-R------------YGRY--------V-----NSPNA-RKAVSSCGI-A-LP---------TCH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16 Fugue 77.5732% -95 - C4 -2RKN DIRL1_ARATH A:[1-77] --------------------------------------------------------------AIDLCGMS--Q--D--EL---NECKPAV--S-KENPT--S-P-----SQPCCTALQHA----------D-----F-A-----------CLCGYKNS------P-W------------LGSFG-------V-----DPELA-SALPKQCGL-A-NAP--------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 HHSearch 74.7730%-102 - C4 -2RKN DIRL1_ARATH A:[9-77] ------------------------------------------------------------------------Q--D--EL---NECKPAV--S-KE--NPTS-P-----SQPCCTALQH-----------A-----DFA-----------CLCGYKNS------P-W------------LGSFG-------V-----DPELA-SALPKQCGL-A-NAP--------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6 HHSearch 71.4930% -85 - C4 -2ALG NLTP1_PRUPE A:[2-79] ----------------------------------------------------------------ITC--G--Q--VSSSL---APCIPYV--R-GG--G--A-V-----PPACCNGIRNVNNLARTTPDRQ-----A-A-----------CNC--LKQ------L-S-------------ASVPG------V-----NPNNA-AALPGKCGV-S-IP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 HHSearch 71.3630% -82 - C4 -1T12 - NLTP1_TOBAC A:[3-78] -----------------------------------------------------------------TC--G--QVTS--NL---APCLAYL--R-NT--G----P-----LGRCCGGVKALVNSARTTEDRQ-----I-A-----------CTC--LKS------A-A-------------GAISG------I-----NLGKA-AGLPSTCGV-N-IP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10 HHSearch 70.0529%-113 - C4 -1HYP - HPSE_SOYBN A:[10-73] ------------------------------------------------------------------------------DL---SICLNILGGS-LG--T----------VDDCCALIGG-----------LGDIEAI-V-----------CLCIQLRA---------------------LGI---------L-----NLNRNLQLILNSCGR-S-YP---------S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17 Fugue 69.7526% -86 - C4 -1BWO NLTP1_WHEAT A:[1-90] ----------------------------------------------------------------IDC--G--H--VDSLV---RPCLSYV--Q-GG--P---GP-----SGQCCDGVKN-----------L-----H-NQARSQSDRQSACNCLKGIA------R-G------------IHNL--------N------EDNA-RSIPPKCG----VNLPYTISLNIDCSRV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8 HHSearch 67.4129% -69 - C4 -1AFH - NLTP_MAIZE A:[3-80] -----------------------------------------------------------------SC--G--QVAS--AI---APCISYA--R-GQ--G--SGP-----SAGCCSGVRSLNNAARTTADRR-----A-A-----------CNC--LKN------A-A-------------AGVSG------L-----NAGNA-ASIPSKCGV-S-IP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 SP3 66.8022% -73 - C4 -1FK5 NLTP_MAIZE A:[1-93] ---------------------------------------------------------------AISC--GQVA--S--AI---APCISYA--R-GQ--G--SGP-----SAGCCSGVRS-----------L-----N-N-----------A----ART------T-ADRRAACNCLKNAAAGVSG------L-----NAGNA-ASIPSKCGV-S-IPYTISTST--DCSRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5 HHSearch 66.1525% -59 - C4 -1SIY - NLTP1_VIGRR A:[2-78] -----------------------------------------------------------------TC--G--QVQG--NL---AQCIGFL--Q-KG--G--V-V-----PPSCCTGVKNILNSSRTTADRR-----A-V-----------CSCLKAAA------G-A------------VR-G--------I-----NPNNA-EALPGKCGV-N-IP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4 HHSearch 62.1528% -55 - C4 -1BWO NLTP1_WHEAT A:[8-78] ---------------------------------------------------------------------------S--LV---RPCLSYV--Q-GG--P--G-P-----SGQCCDGVKNLHNQARSQSDRQ-----S-A-----------CNCLKGIA------R-G------------IH-N--------L-----NEDNA-RSIPPKCGV-N-LP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31 SP3 57.7920% -66 - C4 -1KNG - CYCY_BRADU A:[50-193] ---------------------------------------------------RPAPQTALPPLEGLQA--D--N--V--QV---PGLDPAA--F-KG-----K-VSLVNVWASWCVPCHD-----------E-----A-P-----------LLTELGKD------K-R------------FQLV--------GINYKDAADNA-RRFLGRYGN-P-FG---------RVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL-------------------------------------------------------------------------------------------------------------------------------------------
27 SP3 54.7314% -84 - C4 -1U78 - TC3A_CAEEL A:[2-104] -------------------------------------------------------------PRGSAL--S--D--T--ER---AQ-LDVM--K-LL--N--V-S-----LHEMSRKISR-----------S-----R-H-----------CIRVYLKD------PVS------------YGTSKRAPRRKAL-----SVRDE-RNVIRAASN-S-CK---------TARDIRNELQLSASKRTILNVIKRSG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23 Fugue 51.5317% -71 - C4 -1S6D - 2SS8_HELAN A:[1-103] --------------------------------------PYGRGRTESGCYQQMEEAEMLNHCGMYLM--K--N--L--GE---RSQVSPR--M-RE--E--D-H-----KQLCCMQLKNL----------D-----E-K-----------CMCPAIMMMLNEPMW-I------------RMRD--------Q-----VMSMA-HNLPIECNL-M-SQ---------PCQM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33 SP3 47.8316% -57 - C4 -1PS6 PDXA_ECOLI A:[1-328] VKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTNRAAMLGLPLTLRPYSPNSPAQPQ--T--A--G--TLTLLPVALRAP--V-TA--G--Q-L-----AVENGHYVVE-----------T-----L-A-----------RACDGCLN------G-E------------FAAL--------I-----TGPVH-KGVINDAGI-P-FT---------GHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ
30 SP3 46.5016% -36 - C4 -1XFL - TRXH1_ARATH A:[1-114] -------------------------------------------------------MASEEGQVIACH--T--V--E--TW---NEQLQKA--N-ES--K--T-LVVVDFTASWCGPCRF-----------I-----A-P-----------FFADLAKKL-----P-N------------VLFLK-------V-----DTDEL-KSVASDWAIQA-MP---------TFMFLKEGKILDKVVGAKKDELQSTIAKHLA--------------------------------------------------------------------------------------------------------------------------------------------------------------------
28 SP3 45.7611% -70 * C4 *1F9M - TRXF_SPIOL A:[10-121] --------------------------------------------------------MEAIVGKVTEV--N--K--D--TF---W---PIV--KAAG--D--K-PVVLDMFTQWCGPCKA-----------M-----A-P-----------KYEKLAEEY-----L-DVI----------FLKL--------D-----CNQEN-KTLAKELGI-RVVP---------TFKILKENSVVGEVTGAKYDKLLEAIQAARS--------------------------------------------------------------------------------------------------------------------------------------------------------------------


User Run . : Multi Template Modeling Result:

(2 SA) .........10........20........30........40........50........60.......
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) VTCSPVQLSSCVSAITSSTPPSNLCCSKIKEQRPCLCQYMKNPNLRKFVNTPNARKVANTCGTPFPRC
38 97.15100%-114 - C- -M038 - A:[1-119] VTCSPVQLSSCVSAITSSTPPSNLCCSKIKEQRPCLCQYMKNPNLRKFVNTPNARKVANTCGTPFPRC
40 90.91100%-107 - C- -M040 - A:[1-84] VTCSPVQLSSCVSAITSSTPPSNLCCSKIKEQRPCLCQYMKNPNLRKFVNTPNARKVANTCGTPFPRC