@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 549_tII_BRANA: (2014-05-10 )
TRVESFGEVAQSCVVTELAPCLPAMTLTGDPTTECCDKLVEQKPCLCGYIRNPAYSMYVTSPNARKVLDFCKVPFPSC
Atome Classification :
(20 SA)
----------------------------------------------------------------------------.........10..-----.--..--..---.20....--.--...--30-..-----------.......---------40-----------.-----.-......50----..-.------------...--.--------.60--...-.....70.....---------..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------TR
V
E
S
F
G
E
V
A
Q
S
C
-----
V
--
V
T
--
E
L
---
A
PCL
P
A
M
--T--LTG--D--P
T
-----------
T
E
C
C
D
K
L
---------
V
E-----------Q-----K-P
C
L
C
G
YIR----NP-
A
------------
Y
S
M
--
Y
--------VTS--P
N
A
-
R
K
V
L
D
F
CKVPFP---------SC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
90.92
37%
-116
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
---------------------------------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
--
S
G
A
--
K
--
P
S
-----------
G
E
C
C
G
N
L
---------
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
----
D
P
-
T
------------
Y
G
Q
--
Y
--------
I
R
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
---------
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
85.77
37%
-105
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
--------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
A
--
R
--
P
T
-----------
A
A
C
C
S
S
L
---------
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
P
-
R
------------
Y
G
R
--
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
---------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
85.75
36%
-105
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
A
--
R
--
P
T
-----------
A
A
C
C
S
S
L
---------
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
P
-
R
------------
Y
G
R
--
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
---------
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
83.13
32%
-105
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
A
--
R
--
P
T
-----------
A
A
C
C
S
S
L
---------
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
P
-
R
------------
Y
G
R
--
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
---------
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
82.22
31%
-112
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
--------------------------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
Y
L
--
R
--
N
T
G
-----
P
L
-----------
G
R
C
C
G
G
V
---------
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
----
S
A
-
A
-------------
G
A
--
I
SG------
I
N
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
81.56
29%
-102
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
--------------------------------------------------------------------------------------
I
S
C
-----
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
G
--
S
G-
P
S
-----------
A
G
C
C
S
G
V
---------
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
----
N
A
-
A
-------------
A
G
--
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
77.80
30%
-107
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
---------------------------------------------------------------------------------------
L
C
-----
G
MS
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
N
PT
S
--
P
S
-----------
Q
P
C
C
T
A
L
---------
Q
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
----
S
P
-
W
------------
L
G
S
--
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
76.19
28%
-100
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------
A
I
D
L
C
GM---
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
N
--
P
TS
P
S
-----------
Q
P
C
C
T
A
L
---------
Q
H
A----------
D
-----
F
-
A
C
L
C
G
Y
K
N
----
S
P
-
W
------------
L
G
S
--
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
74.65
22%
-118
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------
I
D
C
G
H
-----
V
--
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
--
G
G
P
---G-
P
S
-----------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
-----------
D
-----
R
-
Q
S
A
C
N
C
L
K
----
G
I
-
A
------------
R
G
I
HN
L
--------
N
-
E
--
D
N
A
-
R
S
I
P
P
K
C
G
--
V
N
LP
Y
T
I
S
LNI
D
C
SRV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
73.22
27%
-136
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
--------------------------------------------------------------------------------------
P
S
C
-----
P
------
D
L
---
S
I
C
L
N
I
L
GG
S
--
L
G
T
------
V
-----------
D
D
C
C
A
L
I
---------
G
G
LG
D
I
E
------
A
-----
I
-
V
C
L
C
I
Q
L
R
----
A
---------------
L
G
I
-----------
L
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
---------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
70.52
19%
-125
* C4 *
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------
P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
KN
L
G
E
--
R
--
S
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
---------
K
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
E
P
-
M
------------
W
I
R
--
M
--------
R
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
---------
P
C
QM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
68.52
29%
-110
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
--------------------------------------------------------------------------------------
I
T
C
-----
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
--
G
G
G
--
A
--
V
P
-----------
P
A
C
C
N
G
I
---------
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
----
Q
L
-
S
-------------
A
S
--
V
PG------
V
N
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
66.79
23%
-63
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
----------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
--
T
A
G
--
Q
--
L
A
-----------
V
E
N
G
H
Y
V
---------
V
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
----
N
G
-
E
------------
F
A
A
--
L
--------
I
T
G
--
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
T
---------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q-------------------------------------
14
HHSearch
64.91
27%
-59
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[8-78]
--------------------------------------------------------------------------------------------------
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
--
G
G
P
--
G
--
P
S
-----------
G
Q
C
C
D
G
V
---------
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
R
-
G
------------
I
H
---
N
--------
L
N
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
63.70
23%
-82
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
G
--
S
G-
P
S
-----------
A
G
C
C
S
G
V
---------
R
S
-----------
L
-----
N
-
N
A
----
A
R
----
T
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
--
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST--
D
C
SRVN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
59.32
12%
-107
- C4 -
1QAS
-
PLCD1_RAT
A:
[205-298]
-----------------------------------------------------------------YKMLTQR
A
E
I
D
R
A
F
E
E
A
A
G
S
A
E
T
L
-----
S
--
V
E
--
R
L
---
V
T
F
L
Q
H
Q
--
Q
--
R
E
E
--
E
--
A
G
-----------
P
A
L
A
L
S
L
---------
I
E
-----------
R
YEPS
E
T
-
A
K
A
Q
R
Q
M
T
----
K
D
-
G
------------
F
L
M
--
Y
--------
L
L
S
--
A
D
G
-
N
A
F
S
L
A
H
R
R
V
Y
Q
---------
D
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
56.41
31%
-45
- C1 -
1YU0
-
?
A:
[5-380]
VQ
F
R
G
G
T
T
A
Q
H
A
T
FTGAAR
E
I
T
V
DTDKN
T
V
V
V
H
DGATAG
G
F
P
L
A
R
HDLVKT
A
F
I
K
ADKSAVAFTRTGNA
T
A
S
I
K
A
G
T
I
V
E
V
N
G
K
L
V
Q
F
T
-----
A
--
D
T
--
A
I
---
T
--
M
P
A
L
--
T
--
A
G
T
--
D
--
Y
A
-----------
I
Y
V
C
D
D
-------------------------------
G
T
V
R
A
D
S
N
----
F
S
-
A
------------
P
T
G
--
Y
---------
T
S
--
T
T
A
-
R
K
V
G
G
F
H
Y
A
P
G
S
---------
N
A
AAQAGGNTTAQINEYSLWDIKFRPAALDPRG
M
T
L
V
AGA
F
W
A
D
IYLLGVNHLTDGTSKYN
V
T
I
A
D
GSASPKKSTKFGGDGSAAYSDGA
W
Y
N
F
A
E
V
M
T
H
H
G
K
R
L
P
N
Y
N
E
F
Q
A
L
A
FGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGC
L
W
T
W
G
N
E
F
G
G
V
NGASEYTANTGGR
G
S
V
Y
AQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAF
F
G
A
R
G
V
C
D
H
L
I
L
17
HHSearch
55.61
23%
-90
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
--
K
G
G
--
V
--
V
P
-----------
P
S
C
C
T
G
V
---------
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
----
A
G
-
A
------------
V
R
---
G
--------
I
N
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
52.12
16%
-102
* C6 *
1IFY
-
RD23A_HUMAN
A:
[156-204]
----------------------------------------------------------------------------------------------------------------
T
--
L
--
V
T
G
--
S
--
E
Y
-----------
E
T
M
L
T
E
I
---------
M
S
-----------
M
-----------
G
Y
E
R
----
E
R
-
V
------------
V
A
A
--
L
--------
R
A
S
Y
-
N
N
P
-
H
R
A
V
E
Y
L
L
T
G
I
P
---------
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
50.03
17%
-70
- C6 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-----------------------------------------------------------------------------------
P
R
G
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
--
L
L
N
--
V
--
S
L
-----------
H
E
M
S
R
K
I
---------
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
P
V
S
------------
Y
G
T
--
S
KRAPRRKA
L
S
V
--
R
D
E
-
R
N
V
I
R
A
A
S
N
S
C
K
---------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
TR
V
E
S
F
G
E
V
A
Q
S
C
V
V
T
E
L
A
PCL
P
A
M
TLTGDP
T
T
E
C
C
D
K
L
V
EQKP
C
L
C
G
YIRNP
A
Y
S
M
Y
VTSP
N
A
R
K
V
L
D
F
CKVPFPSC
40
50.10
100%
-5
- C- -
M040
-
A:
[3-112]
T
R
V
E
S
F
G
E
V
A
Q
S
C
V
V
T
E
L
A
P
C
L
P
A
M
T
L
T
G
D
P
T
T
E
C
C
D
K
L
V
E
Q
K
P
C
L
C
G
Y
I
R
N
P
A
Y
S
M
Y
V
T
S
P
N
A
R
K
V
L
D
F
C
K
V
P
F
P
S
C
38
44.78
100%
-2
- C- -
M038
-
A:
[3-126]
T
R
V
E
S
F
G
E
V
A
Q
S
C
V
V
T
E
L
A
P
C
L
P
A
M
T
L
T
G
D
P
T
T
E
C
C
D
K
L
V
E
Q
K
P
C
L
C
G
Y
I
R
N
P
A
Y
S
M
Y
V
T
S
P
N
A
R
K
V
L
D
F
C
K
V
P
F
P
S
C
41
43.89
100%
-1
- C- -
M041
-
A:
[3-112]
T
R
V
E
S
F
G
E
V
A
Q
S
C
V
V
T
E
L
A
P
C
L
P
A
M
T
L
T
G
D
P
T
T
E
C
C
D
K
L
V
E
Q
K
P
C
L
C
G
Y
I
R
N
P
A
Y
S
M
Y
V
T
S
P
N
A
R
K
V
L
D
F
C
K
V
P
F
P
S
C