@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 583_tV_CICAR: (2014-05-11 )
AGECGKSTTPDNEAFKLAPCASAAQDENASVSQSCCAQVKKLGQNPSCLCAVMLSNTAKMSGADPQIAVTIPKRCNIATRPVGYKCGPYTLP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------........--.-----10...--.---.----...----20.-----....----.------------.-----------------.---------------------30----------------..---.......40--...-----.--------.--------.---...50.-------.------..--------....----------60---------.-.---------.---.-.---------....70------------.-------.-......----.80.........90---..-------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------AGECGKST--T-----PDNE
A
--
F
---
K
----LAP----CAS-----AAQD----E------------N-----------------A---------------------S-----------------
V
S
---
Q
S
C
C
A
Q
V
K
---
K
LG-----Q--------
N
--------
P
---
S
C
L
C
A
V
-------
M
------LS--------NTAK----------M----------S-G---------A---D-
P
---------
Q
I
A
V
T-------------I-------P-KRCNIA----TR-PVGYKCGPYT----LP-------------------------------------------------------------------------------------------------------------------------------------
31
SP3
79.81
22%
-89
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------
A
I
--
S
-----
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------------
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-----------------
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---------------------
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-----------------
P
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---
A
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---
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N
N
A
A--
R
--------
T
--------
T
A
D
R
R
A
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N
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-------
L
------
K
N
--------
A
A
A
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----------
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----------
S
-
G
---------
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---
N
-
A
---------
G
N
A
A
S
-------------
I
-------
P
-
S
K
C
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V
S
--------
I
P
Y
T
I
S
T
S
T
DCSR
V
N
-------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
70.26
24%
-112
- C4 -
1SM7
-
?
A:
[5-100]
---------------------------------------------------------------------------------------
C
Q
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E
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--
Q
QE
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-----------------
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F
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E
NQWGPQQGP------
S
-----------------
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R
---
E
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C
N
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Y
---
Q
E
---------------
D
--------
Q
---
V
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-------
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------
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--------
A
A
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S
----------
V
RVQGQ-----
H
-
G
PFQST----
R
---
I
-
Y
---------
Q
I
A
K
N
-------------
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-------
P
-
N
V
C
N
M
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----
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
67.80
28%
-59
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
---------------------------------------------------------------------------------
T
-----
C
G
Q
V
Q
--
G
---
N
----
L
A
Q
----
C
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-----
F
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Q
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----
G
------------------------------
G
---------------------
V
-----------------
V
P
---
P
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C
T
G
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---
N
I
L
-----
N
SSRTTADR
R
--------
A
---
V
C
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C
L
---------------
K
A
---------
A
A
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----------
A
----------
V
R
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---------
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---
N
-
P
---------
N
N
A
E
A
-------------
L
-------
P
-
G
K
C
G
V
N
----
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
64.97
34%
-54
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------A
I
D
L
C
G
-------------
M
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--
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---
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------------
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T--------------------
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---
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---
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A
---------------
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--------
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-------
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------
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--------
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----------
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----------
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-
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---------
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---
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-
P
---------
E
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A
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A
-------------
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-------
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-
K
Q
C
G
L
A
----
N
A
-
P
---
T
C
-----------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
63.42
16%
-82
- C4 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------------------------------GPMRRE
R
G
R
Q
G
D
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SC
E
-----
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---
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----
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----
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-----
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M
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----
R
------------
I
MGEQEQYDSYDIRSTR
S
S
---------------------
D
-----------------
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Q
---
Q
R
C
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---
E
M
E
-----
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--------
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--------
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------
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--------
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---
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-
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DRQMV
Q
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S
-------------
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-------
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-
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Q
C
N
F
R
----
A
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-
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---
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C
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L
D
V
----
S
G
GRCS---------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
59.80
22%
-76
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-82]
---------------------------------------------------------------------------------
D
-----
C
G
H
V
D
--
S
---
L
----
V
R
P
----
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L
S
-----
Y
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Q
G
----
G
------------------------------
P
---------------------
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-----------------
P
S
---
G
Q
C
C
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V
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---
N
L
H
-----
N
Q
ARS
Q
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D
R
Q
--------
S
---
A
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-------
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------
I
A
--------
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--
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----------
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----------
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-
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---------
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---
N
-
E
---------
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N
A
R
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-------------
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-------
P
-
P
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C
G
V
N
----
L
P
Y
T
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
59.27
18%
-100
- C4 -
1B1U
-
IAAT_ELECO
A:
[16-110]
--------------------------------------------------------------------------------------------------
P
----
L
D
S
----
C
R
W
-----
Y
V
S
T
----
R
T
CGVGP------
R
-----------------
L
A
T
Q
------------------
E
-----------------
M
K
---
A
R
C
C
R
Q
L
E
---
A
I
---------------
P
--------
A
---
Y
C
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E
A
-------
V
------
R
I
--------
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M
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V
V
T
PS-----
G
Q
H
E
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RLLQDL
P
-
G
CP
R
Q
-----
V
Q
--
R
A
F
---------
A
P
K
L
V
-------------
T
-------
E
-
V
E
C
N
L
A
----
T
I
-
H
G
---------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
59.02
20%
-75
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------
P
Y
G
R
G
R
T
E
--
S
-----
G
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--
M
---
E
E
A
EM
L
N
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----
C
G
M
-----
Y
L
M
K
----
N
LGERSQVSPR
M
R
E
-----------------
E
---------------------
D
-----------------
H
K
---
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C
M
Q
L
K
---
N
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---------------
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--------
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---
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A
-------
I
------
M
M
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EP---
M
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I
R
----------
M
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---------
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---
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---------
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M
A
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-------------
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-------
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N
L
M
----
S
Q
-----
P
C
Q
M
---------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
58.17
28%
-59
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
---------------------------------------------------------------------------------
S
-----
C
G
Q
V
A
--
S
---
A
----
I
A
P
----
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I
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-----
Y
A
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----
Q
------------
G
-----------------
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---------------------
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-----------------
P
S
---
A
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C
C
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---
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N
-----
N
A
-------
A
RT
T
A
D
R
R
-
A
---
A
C
N
C
---------
L
------
K
N
--------
A
-
A
A
----------
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----------
V
S
G
---------
L
---
N
-
A
---------
G
N
A
A
S
-------------
I
-------
P
-
S
K
C
G
V
S
----
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
57.29
19%
-48
- C2 -
1D2Z
1
TUBE_DROME
B:
[1-150]
---------------LSSKYSRNTELRRVE
D
N
D
I
Y
R
L
A
K
I
L
D
ENSC
W
R
K
L
M
S
I
IPKGMDVQACSGAGCLN
F
P
A
E
I
K
K
G
F
--
K
-----
Y
T
A
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--
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---
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----
A
R
-
P
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D
G
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G
A
L
I
S
----
L
E
-------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
56.84
32%
-53
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
------------------------------------------------------------------------------
D
--
L
-----
C
G
M
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Q
--
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---
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P----------------
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A
S
A
-------------
L
-------
P
-
K
Q
C
G
L
A
----
N
A
-
P
----------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
56.73
22%
-132
- C4 -
1HSS
-
IAA1_WHEAT
A:
[37-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
---
R
D
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--GAFPRCR
R
E
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---
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A
A
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-------
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-
A
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----
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V
----------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
55.27
22%
-70
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
---------------------------------------------------------------------------------
T
-----
C
G
Q
V
S
--
S
---
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----
L
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----
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------------------------------
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-----------------
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RT
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---------
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------
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---
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-
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N
A
A
A
-------------
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-------
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G
K
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G
V
S
----
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
54.68
17%
-82
* C2 *
1I0Z
2
LDHB_HUMAN
A:
[1-332]
AT
L
K
E
K
L
I
APVAEE
E
A
T
V
P
N
N
K
I
T
V
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G
VG
Q
V
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M
A
C
A
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S
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SLAD
E
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VL
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NP
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------
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--------
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----------
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---
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SGC
N
L
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A
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F
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Y
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M
-------
A
-
E
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I
H
PSS
C
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G
-
W
I
L
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D
S
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----
V
A
VWSGVNVAGVS
L
Q
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P
EMGTDNDSENW
K
E
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K
M
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E
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A
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KGYTN
W
A
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A
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NLSRIHP
V
S
T
MVKGMYGIENE
V
F
L
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ARGLT
S
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KLK
D
D
E
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A
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A
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T
L
W
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D
LKD
39
SP3
54.35
18%
-95
- C3 -
1O6D
-
RLMH_THEMA
A:
[1-147]
-----------------------------------------------------------------L
R
V
R
I
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I------
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--------
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---
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-------
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PYGLN
E
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----
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H
GE---------------------------------------------------------------------------------------------------------------
20
HHSearch
54.07
19%
-95
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------
N
---
P
----
L
P
S
----
C
R
W
-----
Y
V
T
S
R
TCG
I
------------
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-----------------
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R--------------------
L
P
W
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E
-------------
L
K
---
R
R
C
C
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---
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---------------
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--------
A
---
Y
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A
-------
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--------
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M
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A
I
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P
G
PDAQ-
L
E
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-------
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-
E
D
LPGCP
R
E
-
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---
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-
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---------
G
F
A
A
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-------------
L
VT-----
E
-
A
E
C
N
L
A
----
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
53.29
27%
-54
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
---------------------------------------------------------------------------------
T
-----
C
G
Q
V
T
--
S
---
N
----
L
A
P
----
C
L
A
-----
Y
L
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N
----
T
------------
G
---------------------------------------------------------
P
L
---
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R
C
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G
G
V
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---
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L
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-----
N
--------
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A
RT
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Q
I
---
A
C
T
C
---------
L
------
K
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--------
A
-
A
G
----------
A
----------
I
S
G
---------
I
---
N
-
L
---------
G
K
A
A
G
-------------
L
-------
P
-
S
T
C
G
V
N
----
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
52.83
19%
-95
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
--------------------------------------------------------------------------------------------------
D
----
L
S
I
----
C
L
N
-----
I
L
G
G
----
S
------------
L
-----------------
G
---------------------
T
------------------
V
---
D
D
C
C
A
L
I
G
---
G
L
G
-----
D
I
E
------
A
--------
I
---
V
C
L
C
I
Q
-------
L
------
R
A
-----------
L
----------
G
----------
I
-----------
L
---
N
-
L
---------
N
R
N
L
Q
-------------
L
-------
I
L
N
S
C
G
R
S
-----
Y
-
P
S
N
A
T
C
P
R
---------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
52.39
16%
-82
- C4 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
---------------------------------------------------------------------------------
S
-----
C
E
R
Q
V
D
R
V
---
N
----
L
K
P
----
C
E
Q
-----
H
I
M
Q
----
R
------------
I
-----------------
M
---------------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
---
Q
R
C
C
D
E
L
N
---
E
M
E
-----
N
--------
T
--------
Q
---
G
C
M
C
E
A
-------
L
------
Q
Q
--------
I
M
E
N
----------
Q
CDRL------
Q
-
D
RQ-------
M
V
Q
Q
F
-
K
---------
R
E
L
M
S
-------------
L
-------
P
-
Q
Q
C
N
F
R
------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
52.33
24%
-41
- C4 -
1PSY
-
2SS_RICCO
A:
[13-116]
---------------------------------------------------------------------------
S
S
S
Q
--
Q
-----
C
R
Q
E
V
--
Q
RK-
D
----
L
S
S
----
C
E
R
-----
Y
L
R
Q
----
S
------------
S
-----------------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----------------
Q
L
---
Q
Q
C
C
N
Q
V
K
---
Q
V
---------------
R
--------
D
---
E
C
Q
C
E
A
-------
I
------
K
Y
--------
I
A
E
D
Q
I
Q
Q
G
QLHGE
E
----------
S
-
E
---------
R
---
V
-
A
---------
Q
R
A
G
E
-------------
I
-------
V
-
S
S
C
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGKSTTPDNE
A
F
K
LAPCASAAQDENAS
V
S
Q
S
C
C
A
Q
V
K
K
LGQ
N
P
S
C
L
C
A
V
M
LSNTAKMSGAD
P
Q
I
A
V
TIPKRCNIATRPVGYKCGPYTLP
46
94.38
100%
-118
- C- -
M046
-
A:
[1-158]
A
G
E
C
G
K
S
T
T
P
D
N
E
A
F
K
L
A
P
C
A
S
A
A
Q
D
E
N
A
S
V
S
Q
S
C
C
A
Q
V
K
K
L
G
Q
N
P
S
C
L
C
A
V
M
L
S
N
T
A
K
M
S
G
A
D
P
Q
I
A
V
T
I
P
K
R
C
N
I
A
T
R
P
V
G
Y
K
C
G
P
Y
T
L
P
47
91.80
100%
-116
- C- -
M047
-
A:
[1-182]
A
G
E
C
G
K
S
T
T
P
D
N
E
A
F
K
L
A
P
C
A
S
A
A
Q
D
E
N
A
S
V
S
Q
S
C
C
A
Q
V
K
K
L
G
Q
N
P
S
C
L
C
A
V
M
L
S
N
T
A
K
M
S
G
A
D
P
Q
I
A
V
T
I
P
K
R
C
N
I
A
T
R
P
V
G
Y
K
C
G
P
Y
T
L
P
41
34.92
100%
14
- C- -
M041
-
A:
[2-140]
A
G
E
C
G
K
S
T
T
P
D
N
E
A
F
K
L
A
P
C
A
S
A
A
Q
D
E
N
A
S
V
S
Q
S
C
C
A
Q
V
K
K
L
G
Q
N
P
S
C
L
C
A
V
M
L
S
N
T
A
K
M
S
G
A
D
P
Q
I
A
V
T
I
P
K
R
C
N
I
A
T
R
P
V
G
Y
K
C
G
P
Y
T
L
P