@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 593_tV_RICCO: (2014-05-11 )
AGECGKTPIRSAAASLSPCLTAVGNVRASVPPACCSKVGALIKTAPKCLCAVLLSPLAMQAGIKPGIAITIPKRCNIKNRPVGKKCGRYTVP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------.......----------------------..10..---.---.....20...----...-------------------.------------.-----------------30---------------.--------.-......40..-------.-------.-------.-------.-..50.-------...---..--------.---.------60--.--------.--------.---..-.--...70------------.-----------.......----.80..--......-90.-------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------AGECGKT----------------------
P
I
R
S
A
A
---
A
---
S
L
S
P
C
L
T
A
VG----NVR-------------------A------------S-----------------V
P
---------------
P
--------
A
-
C
C
S
K
V
G
A
L
I
K-------T-------
A
-------
P
-------
K
-
C
L
C
A
V
-------
L
L
S
---
P
L
--------
A
---
M
------Q---A--------G--------I---KP-
G
--
I
A
I
T-------------I-----------PKRCNIK----NRPVG--KKCGRY-TVP-------------------------------------------------------------------------------------------------------------------------------------
30
SP3
91.73
21%
-121
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------
A
I
----------------------
S
C
G
Q
V
A
---
S
---
A
I
A
P
C
I
S
Y
A
R
----
G
Q
G
-------------------
S
------------
G
-----------------
P
S
---------------
A
--------
G
-
C
C
S
G
V
R
S
L
N
N
-------
A
-------
A
-------
R
T
T
A
D
R
--
R
-
A
A
C
N
C
-------
L
K
N
---
A
A
--------
A
---
G
------
V
---
S
--------
G
--------
L
---
N
A
-
G
--
N
A
A
S
-------------
I
-----------
P
S
K
C
G
V
S
I---
P
Y
T
I
S
TS
T
D
C
S
R
V
-
N
---------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
83.79
32%
-114
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
-----------------------------------------------------------------------------------
I
----------------------
T
C
G
Q
V
T
---
S
---
N
L
A
P
C
L
A
Y
L
R
----
N
T
G
--------------------------------------------------
P
L
---------------
G
--------
R
-
C
C
G
G
V
K
A
L
V
N
-------
S
-------
A
-------
R
T
T
E
D
R
Q
I
A
-
C
T
C
---------
L
K
S
---
A
---------
A
---
G
------
A
---
I
S-------
G
--------
I
---
N
L
-
G
--
K
A
A
G
-------------
L
-----------
P
S
T
C
G
V
N
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
78.58
29%
-151
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
-----------------------------------------------------------------------------------
I
----------------------
T
C
G
Q
V
S
---
S
---
S
L
A
P
C
I
P
Y
V
R
----
G
G
--------------------
G
------------
A
-----------------
V
P
---------------
P
--------
A
-
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
-------
Q
-------
A
-------
A
-
C
N
C
---------
L
K
Q
----
L
--------
S
---
A
------
S
---
V
P-------
G
--------
V
---
N
P
-
N
--
N
A
A
A
-------------
L
-----------
P
G
K
C
G
V
S
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
78.01
26%
-138
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
----------------------------------------------------------------------------------------------------------
T
C
G
Q
V
Q
---
G
---
N
L
A
Q
C
I
G
F
L
Q
----
K
G
--------------------
G
------------
V
-----------------
V
P
---------------
P
--------
S
-
C
C
T
G
V
K
N
I
L
N
-------
S
SRTTADR
R
-------
A
-------
V
-
C
S
C
---------
L
K
A
----
A
--------
A
---
G
------
A
---
V
R-------
G
--------
I
---
N
P
-
N
--
N
A
E
A
-------------
L
-----------
P
G
K
C
G
V
N
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
75.88
23%
-126
* C4 *
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------
P
S
C
P
-------------------------------------
D
L
S
I
C
L
N
I
L
G
----
G
S
L
-------------------
G
------------
T
-----------------
V
----------------
D
--------
D
-
C
C
A
L
I
G
G
L
G
D
I
------
E
-------
A
-------
I
-------
V
-
C
L
C
---------------
I
Q
--------
L
---
R
------
A
---
L
--------
G
--------
I
L--
N
L
-
N
--
R
N
L
Q
L
------------
I
-----------
L
N
S
C
G
-
R
----
S
Y
P
S
N
--
A
T
C
P
R
T
-----------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
73.43
27%
-105
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
-----------------------------------------------------------------------------------
I
----------------------
S
C
G
Q
V
A
---
S
---
A
I
A
P
C
I
S
Y
A
R
----
G
Q
G
-------------------
S
------------
G
-----------------
P
S
---------------
A
--------
G
-
C
C
S
G
V
R
S
L
N
N
-------
A
-------
A
RT
T
A
D
R
R
A
-------
A
-
C
N
C
---------
L
K
N
---
A
---------
A
---
A
------
G
---
V
S-------
G
--------
L
---
N
A
-
G
--
N
A
A
S
-------------
I
-----------
P
S
K
C
G
V
S
----
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
72.98
20%
-124
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
----------------------------------------------------------------------------------------------------------
D
C
G
H
V
D
---
S
---
L
V
R
P
C
L
S
Y
V
Q
----
G
G
--------------------
P
------------
G
-----------------
P
S
---------------
G
--------
Q
-
C
C
D
G
V
K
N
L
H
N
Q
AR----
S
Q
S
D
R
---
Q
-------
S
-------
A
-
C
N
C
L
K
-------
G
I
A
---
R
--------------------
G
---
I
H-------
N
--------
L
---
N
E
-
D
--
N
A
R
S
-------------
I
-----------
P
P
K
C
G
V
N
----
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
70.69
30%
-80
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------A
I
D
L
C
G
---------------------------
M
S
Q
---
D
---
E
L
N
E
C
K
P
A
V
S
----
K
E
N
-------------------
P
------------
T
-----------------
S
P
S--------------
Q
--------
P
-
C
C
T
A
L
Q
---
H
-------
A
-------
D
-------
F
-------
A
-
C
L
C
G
Y
-------
K
N
S
---
P
W
--------
L
---
G
------
S
---
F
--------
G
--------
V
---
D
P
-
E
--
L
A
S
A
-------------
L
-----------
P
K
Q
C
G
L
A
----
N
A
P
-----
T
C
--------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
70.53
27%
-104
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
----------------------------------------------------------------------------------
I
D
----------------------
L
C
G
M
S
Q
---
D
---
E
L
N
E
C
K
P
A
V
S
----
K
E
N
P------------------
T
------------
S
-----------------
P
S
---------------
Q
--------
P
-
C
C
T
A
L
Q
H
A
-----------------
D
-------
F
-------
A
-
C
L
C
G
Y
-------
K
N
S
---
P
W
--------
L
---
G
------
S
---
F
--------
G
--------
V
---
D
P
-
E
--
L
A
S
A
-------------
L
-----------
P
K
Q
C
G
L
A
----
N
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
69.09
16%
-150
- C4 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
----------------------------------------------------------------------------------------------------------
S
C
E
R
Q
V
D
R
-
V
---
N
L
K
P
C
E
Q
H
I
M
----
Q
R
I
-------------------
M
------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
---------------
Q
--------
R
-
C
C
D
E
L
N
E
M
E
--------
N
-------
T
-------
Q
-------
G
-
C
M
C
E
A
-------
L
Q
Q
---
I
M
E
N
Q
-----
C
DRL
Q
------
D
---
R
--------
Q
--------
M
V
Q
Q
F
K
-
R
--
E
L
M
S
-------------
L
-----------
P
Q
Q
C
N
F
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
68.75
16%
-141
- C3 -
1I0Z
2
LDHB_HUMAN
A:
[1-332]
--------------------------------------------------AT
L
K
E
K
L
I
APVAEE
E
A
T
V
P
N
N
K
I
T
V
V
G
V
G
Q
V
G
M
A
C
A
I
S
I
L
G
K
SLAD
E
L
A
L
V
D
VL
E
D
K
L
K
G
E
M
---
M
---
D
L
Q
H
G
S
L
F
L
Q
----
T
P
K
I
V
A
D
KDYSVTANSK
I
V
V
V
T
A
------------
G
-----------------
V
R
Q
QEGESRLNL
V
Q
R
N
V
N
--------
V
-
F
K
F
I
I
P
Q
I
V
K
-------
Y
-------
S
-------
P
-------
D
-
C
I
I
I
V
V
S
NP
V
D
I
L
T
Y
---
V
T
--------
W
---
K
------
L
---
S
--------
G
--------
L
---
P
K
-
H
--
R
V
I
G
SGC
N
L
D
S
A
R
F
R
Y
L
M
-----------
A
E
K
L
G
I
H
PSS
C
H
G
W
I
L
--
G
E
H
G
D
S
-
S
V
A
VWSGVNVAGVS
L
Q
E
L
N
P
EMGTDNDSENW
K
E
V
H
K
M
V
V
E
S
A
Y
E
V
I
K
L
KGYTN
W
A
I
G
L
S
V
A
D
L
I
E
S
M
L
K
NLSRIHP
V
S
T
MVKGMYGIENE
V
F
L
S
L
P
C
I
L
N
ARGLT
S
V
I
N
Q
KLK
D
D
E
V
A
Q
L
K
K
S
A
D
T
L
W
D
I
Q
K
D
LKD
20
HHSearch
66.46
25%
-116
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
-----------------------------------------------------------------------------------------------------------------------
D
L
S
I
C
L
N
I
L
G
----
G
S
L
-------------------
G
------------
T
------------------
V
---------------
D
--------
D
-
C
C
A
L
I
G
G
L
G
D
-------
I
-------
E
A
------
I
-------
V
-
C
L
C
I
Q
-------
L
R
A
-----------------
L
------
G
---
I
-----------------
L
---
N
L
-
N
--
R
N
L
Q
-------------
L
I
----------
L
N
S
C
G
R
S
-----
Y
P
S
N
--
A
T
C
P
R
------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
64.82
20%
-125
- C4 -
1S6D
-
2SS8_HELAN
A:
[9-97]
-----------------------------------------------------------------------------------
S
----------------------
G
C
Y
Q
Q
M
---
E
E
A
E
M
L
N
H
C
G
M
Y
L
M
----
K
N
L
-------------------
G
ERSQVSPR
M
R
E
E
D
-----------------
H
K
---------------
Q
--------
L
-
C
C
M
Q
L
K
N
L
-----------------
D
-------
E
-------
K
-
C
M
C
P
A
-------
I
M
M
---
M
L
--------
N
EP-
M
W-----
I
---
R
--------
M
R
D
------
Q
---
V
M
-
S
--
M
A
H
N
-------------
L
-----------
P
I
E
C
N
L
M
----------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
62.02
25%
-115
- C4 -
2LVF
-
?
A:
[7-101]
----------------------------------------------------------------------------------------------------------
E
C
R
E
Q
M
Q
R
Q
Q
---
M
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
S
T
-------------------
Y
QTMPRRGME---
P
-----------------
H
M
---------------
S
--------
E
-
C
C
E
Q
L
E
G
M
-----------------
D
-------
E
-------
S
-
C
R
C
E
G
-------
L
R
M
---
M
M
--------
R
---
M
M
Q
Q
K
EM
Q
---
P
R
G
E
Q
M
---
R
--------
R
---
M
M
-
R
--
L
A
E
N
-------------
I
-----------
P
S
R
C
N
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
61.22
21%
-125
- C4 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
-----------------------------------------------------------------------------------------------------------------------
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
G
-------------------
P
R-----------
L
P
W
P
E
-------------
L
K
---------------
R
--------
R
-
C
C
R
E
L
A
D
I
-----------------
P
-------
A
-------
Y
-
C
R
C
T
A
-------
L
S
I
L
M
D
G
A
--------
I
---
P
P
G
PDAQ
L
E
G
R
L
E
D
LPGCP
R
E
--------
V
---
Q
R
-
G
--
F
A
A
T
-------------
L
VT---------
E
A
E
C
N
L
A
----
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
57.07
14%
-120
- C3 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
T
S
G
A
L
I
K
V
----------------------
N
A
D
I
T
R
---
A
---
C
I
S
Q
A
A
P
L
S
P
----
N
A
V
-------------------
I
------------
I
-----------------
M
V
---------------
N
--------
N
P
L
D
A
M
T
Y
L
A
A
E
-------
V
-------
S
GFPK---
E
-------
R
-
V
I
G
Q
A
G
V
L
D
A
A
R
Y
R
T
---
F
I
--------
A
---
M
------
E
---
A
--------
G
--------
V
---
S
V
E
D
--
V
Q
A
M
-------------
L
M
G
G
H
GDE
M
V
P
L
P
R
F
S
T
I
S
----
G
I
P
V
-------
S
E
-
F
I
A
P
D
R
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L-------------------------
6
Fugue
55.05
21%
-54
- C3 -
2LZ0
-
?
A:
[1-100]
------------------------------------------------------------------------------
G
S
H
E
G
E
----------------------
P
V
V
G
M
D
---
K
---
S
L
F
A
G
N
T
V
I
R
----
E
I
T
-------------------
V
------------
Q
-----------------
P
N
---------------
I
GLLYDGMF
S
-
G
C
T
A
L
E
K
L
I
L
-------
T
-------
G
-------
E
-----------------------
D
---
P
S
--------
A
---
Y
------
S
---
A
--------
G
DG------
L
---
R
D
-
G
A
D
F
L
I
C
-------------
V
-----------
P
E
E
A
L
D
R
----
Y
R
R
D
Y
FW
Q
T
Y
A
A
W
-
I
Q
P
M
E
Q----------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
53.67
26%
-142
- C4 -
2DS2
-
?
B:
[7-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------------
R
--------
Q
-
C
C
N
Q
L
R
Q
V
-----------------
D
-------
R
-------
P
-
C
V
C
P
V
-------
L
R
Q
---
A
A
Q
Q
V
L
Q
R
Q
I
I
---
Q
------
G
P
Q
Q
L
--------
R
--------
R
---
L
F
-
D
--
A
A
R
N
-------------
L
-----------
P
N
I
C
N
I
P
----
N
I
----------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
53.44
24%
-142
- C4 -
1HSS
-
IAA1_WHEAT
A:
[37-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
---------------
R
--------
D
-
C
C
Q
Q
L
A
H
I
-----------------
S
-------
E
-------
W
-
C
R
C
G
A
-------
L
Y
S
---
M
L
D
S
M
-----
Y
K
E
H--------------------
G
AFPRCR
R
E
V
---
V
K
-
L
--
T
A
A
S
-------------
I
-----------
T
A
V
C
R
L
P
----
I
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
53.08
13%
-115
- C3 -
1TC1
2
?
A:
[4-187]
-----------------YEFAEKILFT
E
E
E
I
R
T
R
I
K
E
V
A
K
R
I
A
D
D
Y
K
GKGLRPYVNPLVLISVLKGS
F
M
F
T
A
D
L
C
R
A
L
C
D
F
N
-
V
----------------------
P
V
R
M
E
F
---
I
---
C
V
S
S
Y
V
R
M
L
L
----
D
T
R
-------------------
H
------------
S
-----------------
I
E
G
H
H
V
L
I
V
E
DIVDTA-
L
--------
T
-
L
N
Y
L
Y
H
M
Y
F
T
-------
R
-------
R
-------
P
-------
A
S
L
K
T
V
V
-------
L
L
D
K--
R
E
--------
G
---
R
------
R
---
V
--------
P
--------
F
---
S
A
-
D
Y-
V
V
A
N
-------------
I
-----------
P
N
A
-
F
V
I
----
G
Y
G
L
D
--
Y
D
-
D
T
Y
R
E
L
R
D
I
V
V
LRPE-----------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGKT
P
I
R
S
A
A
A
S
L
S
P
C
L
T
A
VGNVRASV
P
P
A
C
C
S
K
V
G
A
L
I
KT
A
P
K
C
L
C
A
V
L
L
S
P
L
A
M
QAGIKP
G
I
A
I
TIPKRCNIKNRPVGKKCGRYTVP
44
48.90
100%
-8
- C- -
M044
-
A:
[6-117]
A
G
E
C
G
K
T
P
I
R
S
A
A
A
S
L
S
P
C
L
T
A
V
G
N
V
R
A
S
V
P
P
A
C
C
S
K
V
G
A
L
I
K
T
A
P
K
C
L
C
A
V
L
L
S
P
L
A
M
Q
A
G
I
K
P
G
I
A
I
T
I
P
K
R
C
N
I
K
N
R
P
V
G
K
K
C
G
R
Y
T
V
P
40
48.36
100%
-22
- C- -
M040
-
A:
[6-117]
A
G
E
C
G
K
T
P
I
R
S
A
A
A
S
L
S
P
C
L
T
A
V
G
N
V
R
A
S
V
P
P
A
C
C
S
K
V
G
A
L
I
K
T
A
P
K
C
L
C
A
V
L
L
S
P
L
A
M
Q
A
G
I
K
P
G
I
A
I
T
I
P
K
R
C
N
I
K
N
R
P
V
G
K
K
C
G
R
Y
T
V
P
46
47.52
100%
-0
- C- -
M046
-
A:
[6-112]
A
G
E
C
G
K
T
P
I
R
S
A
A
A
S
L
S
P
C
L
T
A
V
G
N
V
R
A
S
V
P
P
A
C
C
S
K
V
G
A
L
I
K
T
A
P
K
C
L
C
A
V
L
L
S
P
L
A
M
Q
A
G
I
K
P
G
I
A
I
T
I
P
K
R
C
N
I
K
N
R
P
V
G
K
K
C
G
R
Y
T
V
P
45
44.82
100%
-6
- C- -
M045
-
A:
[6-117]
A
G
E
C
G
K
T
P
I
R
S
A
A
A
S
L
S
P
C
L
T
A
V
G
N
V
R
A
S
V
P
P
A
C
C
S
K
V
G
A
L
I
K
T
A
P
K
C
L
C
A
V
L
L
S
P
L
A
M
Q
A
G
I
K
P
G
I
A
I
T
I
P
K
R
C
N
I
K
N
R
P
V
G
K
K
C
G
R
Y
T
V
P
47
41.92
100%
-8
- C- -
M047
-
A:
[6-112]
A
G
E
C
G
K
T
P
I
R
S
A
A
A
S
L
S
P
C
L
T
A
V
G
N
V
R
A
S
V
P
P
A
C
C
S
K
V
G
A
L
I
K
T
A
P
K
C
L
C
A
V
L
L
S
P
L
A
M
Q
A
G
I
K
P
G
I
A
I
T
I
P
K
R
C
N
I
K
N
R
P
V
G
K
K
C
G
R
Y
T
V
P