@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 611_tI_THECC: (2014-05-11 )
AISCSDVIKDLRPCVNYLVNGTGKPPSACCAGASALASAASSSSDKKAACECIKSAAKNMKPNAQLAQALPANCGINLPVTIAPNVDCSKVG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------........--.--10--.........----20--------------------.-----.-----------------.------------.---------------.-----------.---------------------...30........40...---.....50...----.....------60---.------.--------.-----------......70-.........--80---........90.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------AI
S
C
S
D
V
I
--
K
--
D
---
L
R
P
C
V
N
Y
L
V----N---------------------G-----T-----------------G------------K---------------
P
-----------
P
---------------------
S
A
C
C
A
G
A
S
A
L
A
S
AASSSS---
D
K
K
A
A
C
E
C
I
K
----
S
A
A
KN------M----K------P--------
N
-----------
A
Q
L
A
Q
AL--PANCGIN
L
P
--
V
T
---IAPNVDCSKVG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
98.80
46%
-128
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
--
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
---------------------
T
-----------------------
G
----------------------------
P
-----------
L
---------------------
G
R
C
C
G
G
V
K
A
L
V
N
S
A
R
T
T
E
---
D
R
Q
I
A
C
T
C
L
K
----
S
A
A
G
A
------
I
S---
G
------
I
--------
N
-----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--
Y
K
---
I
S
P
S
T
D
C
S
K
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
91.76
42%
-114
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
--
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
---------------------
G
-----------------------
P
------------
G
---------------
P
-----------
S
---------------------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
---
D
R
Q
S
A
C
N
C
L
K
----
G
I
A
R
G
------
I
H---
N
------
L
--------
N
-----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--
Y
T
---
I
S
L
N
I
D
C
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
91.46
40%
-126
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
--
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
---------------------
G
-----
P
------------------------------
G
---------------
P
-----------
S
---------------------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
---
D
R
Q
S
A
C
N
C
L
K
----
G
I
A
R
G
------
I
----
H
------
N
LN------------------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--
Y
T
---
I
S
L
N
I
D
C
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
88.46
39%
-120
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
---------------------
Q
-----
G
-----------------
S
------------
G
---------------
P
-----------
S
---------------------
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
---
D
R
R
A
A
C
N
C
L
K
----
N
A
A
A
G
------
V
----
S
------
G
L-------
N
-----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
87.70
35%
-120
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
--
S
--
S
---
L
A
P
C
I
P
Y
V
R
----
G
---------------------
G
-----------------------
G
------------
A
---------------
V
-----------
P
---------------------
P
A
C
C
N
G
I
R
N
V
N
N
L
A
R
T
T
P
---
D
R
Q
A
A
C
N
C
L
K
----
Q
L
S
A
S
------
V
P---
G
------
V
--------
N
-----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--
Y
K
---
I
S
A
S
T
N
C
A
T
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
85.92
39%
-109
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
---------------------
Q
-----
G
-----------------
S
------------
G
---------------
P
-----------
S
---------------------
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
---
D
R
R
A
A
C
N
C
L
K
----
N
A
A
A
G
------
V
S---
G
------
L
--------
N
-----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
84.55
32%
-115
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
--
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
---------------------
G
-----------------------
G
------------
V
---------------
V
-----------
P
---------------------
P
S
C
C
T
G
V
K
N
I
L
N
S
S
R
T
T
A
---
D
R
R
A
V
C
S
C
L
K
----
A
A
A
G
A
------
V
R---
G
------
I
--------
N
-----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--
Y
K
---
I
S
T
S
T
N
C
N
S
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
68.60
19%
-116
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-121]
-----------------------------------------------------------------------------------------------------------------------------
V
--
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M------------------
G
-----
E
QE---------------
Q
------------
Y
D--------------
S
YDIRSTR
S
S
D
Q
Q
---------------------
Q
R
C
C
D
E
L
N
E
M
E
------
N
---
T
Q
G
C
M
C
E
A
L
Q
----
Q
I
M
E
N
------
Q
----
C
DRLQ--
D
R-------
Q
MV
Q
Q
F
------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
QR
C
D
---
L
D
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
62.57
21%
-66
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
QR
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---------------------
S
-----
S
-----------------
S
------------
R
---------------
R
-----------
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
C
N
Q
V
K
Q
V
-----------
R
D
E
C
Q
C
E
A
I
K
----
Y
I
A
E
D
------
Q
----
I
------
Q
--------
Q
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--
R
Q
---
T
R
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
62.37
29%
-92
- C2 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
QLA------------------
G
-----
S
-----------------
P
F
S
E
NQWGPQQGP
S
---------------
L
-----------
R
---------------------
E
Q
C
C
N
E
L
Y
Q
------
E
-----
D
Q
V
C
V
C
P
T
L
K
----
Q
A
A
K
S
------
V
----
R
VQGQHG
P
FQST
R
---
I
-----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
62.02
23%
-78
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
--
Q
--
R
KD-
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
R
R
S
T
GEEVLRMPGDENQQ
Q
-----
E
-----------------
S
------------
Q
---------------
Q
-----------
L
---------------------
Q
Q
C
C
N
Q
V
K
Q
V
-----------
R
D
E
C
Q
C
E
A
I
K
----
Y
I
A
E
D
------
Q
----
I
------
Q
--------
Q
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--
R
Q
---
T
R
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
61.83
24%
-100
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
--
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
---------------------
N
-----
L
-----------------
G
------------
E
---------------
R
-----------
S
QVSPR
M
R
E
E
D
H
K
---------
Q
L
C
C
M
Q
L
K
N
L
-----------
D
E
K
C
M
C
P
A
I
M
----
M
M
L
N
E
PMWIRM
R
----
D
------
Q
--------
V
-----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
------------
S
Q
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
57.98
30%
-80
- C2 -
1PSY
-
2SS_RICCO
A:
[25-116]
-----------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---------------------
S
S
S
R
--
R
-----------------
S
T
GE---------
E
VLRMPGDENQQQESQ
Q
-----------
L
---------------------
Q
Q
C
C
N
Q
V
K
------
Q
V
-----
R
D
E
C
Q
C
E
A
I
K
----
Y
I
A
E
D
------
Q
I
Q
Q
-
G
QLH---
G
EE
S
E
R
---
V
-----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
56.76
21%
-119
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-103]
-----------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
------------------
G
-----
S
-----------------
Q
------------
V
---------------
P
E
A
V
--------
L
---------------------
R
D
C
C
Q
Q
L
A
H
I
-----------
S
E
W
C
R
C
G
A
L
Y
----
S
M
L
D
S
------
M
Y
K
E
H--------G-------
A
FPRCR
R
E
V
V
--
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
56.03
23%
-82
- C2 -
2LVF
-
?
A:
[16-101]
-----------------------------------------------------------------------------------------------------------------------------
Q
--
M
---
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
------------------
E
-----
S
-----------------
T
------------
Y
---------------
Q
TMPRRGMEP
H
-
M
---------------------
S
E
C
C
E
Q
L
E
G
M
-----------
D
E
S
C
R
C
E
G
L
R
----
M
M
M
R
M
M
-----
Q
Q
K
E-
M
Q
-----
P
R
G
E
Q
M
R
R
-
M
-----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
54.43
16%
-78
- C2 -
3V5R
-
GAL3_YEAST
A:
[4-505]
F
E
Q
K
H
L
A
V
V
D
A
F
F
Q
T
YHVKPD
F
I
A
R
S
P
G
R
V
N
LIGEHIDYCD
F
S
V
L
P
L
A
I
D
V
D
M
L
C
A
V
K
I
L
D
E
K
N
P
S
I
T
L
T
N
ADPKF
A
Q
R
K
F
D
L
PLDGSYMAIDPSVSEWS
N
Y
F
K
C
G
L
H
V
A
H
S
Y
L
K
K
I
A
P
E
R
F
N
--
N
--
T
---
P
L
V
G
A
Q
I
F
C
----
Q
---------------------
S
-----
D
IPTGG------------
G
------------
L
---------------
S
-----------
S
---------------------
A
F
T
C
A
A
A
L
A
T
I
R
A
N
M
G
K
N
F
D
I
S
K
K
D
L
T
R
I
T
A
----
V
A
E
H
Y
------
V
----
G
------
V
--------
N
NGG--------
M
D
Q
A
T
S
V
--
Y
G
E
E
D
H
A
L
Y
--
V
E
---
F
R
P
K
L
K
A
T
P
F
K
F
P
QLKN
H
E
I
S
F
V
I
A
N
TLVKSNKAPTN
Y
N
L
R
V
I
E
V
T
V
A
A
N
A
L
A
T
R
Y
S
V
A
L
P
S
HKDNSNSERGN
L
R
D
F
M
D
A
Y
Y
A
R
YENQAQPWNGD
I
G
T
G
I
E
R
L
L
K
M
L
Q
L
V
E
E
S
FSRKKS
G
F
T
V
H
E
A
S
T
A
L
NCS
R
E
E
F
T
R
D
YLTT
F
P
V
R
F
QVLK
L
Y
Q
R
A
K
H
V
Y
S
E
S
L
R
V
L
K
A
L
K
M
M
TSATFHT
D
E
D
F
F
T
D
F
G
R
L
M
N
E
S
Q
A
S
C
D
KLYECSC
I
E
T
N
Q
I
C
S
I
A
L
A
N
GSF
G
S
R
L
T
G
AGWG
G
C
T
I
H
L
V
P
S
G
ANGN
V
E
Q
V
R
K
A
L
I
E
KFYNVRYPDLT
D
E
E
L
K
D
A
I
I
V
S
K
PAL
G
T
C
L
Y
E
Q
30
HHSearch
53.05
25%
-87
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-----------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
----
K
---------------------
N
LGERS
Q
-----------------
V
SPR
M
R
E
E
-----
D
---------------
H
-----------
K
---------------------
Q
L
C
C
M
Q
L
K
N
L
-----------
D
E
K
C
M
C
P
A
I
M
----
M
M
L
N
E
------
P
----
M
WI----
R
MR
D
Q
----
V
-----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
49.14
16%
-97
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
-----------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---------------------
I
-----
G
-----------------
P
------------
R
---------------
L
P
W
P
E
L
------
K
---------------------
R
R
C
C
R
E
L
A
D
---
I
--------
P
A
Y
C
R
C
T
A
L
S
----
I
L
M
D
G
------
A
----
I
P
P
G
P--
D
AQL
E
G
R
L
E
D
LPGCP
R
E
V
Q
--
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
48.21
14%
-54
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
V
--
D
R
V
N
---
L
K
P
C
E
Q
H
I
M
----
Q
---------------------
R
-----
I
MGEQEQYDSYDIRSTR
S
S
------------
D
---------------
Q
-----------
Q
---------------------
Q
R
C
C
D
E
L
N
E
M
E
N
T
Q
G
C
M
C
---
E
A
L
Q
Q
I
M
E
N
Q
CDRL
Q
D
R
Q
M
------
V
----
Q
------
Q
--------
F
-----------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
--
Q
R
CDL
D
V
S
G
G
R
C
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
46.16
22%
-59
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
--
D
--
E
---
L
N
E
C
K
P
A
V
S
K---
E
---------------------
N
-----
P
-----------------
T
------------
S
---------------
P
-----------
S
---------------------
Q
P
C
C
T
A
L
Q
--------
H
A
---
D
F
A
C
L
C
G
Y
K
N
----
S
P
W
L
G
------
S
----
F
------
G
V-------
D
-----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--
P
---------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AI
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
VNGTGK
P
P
S
A
C
C
A
G
A
S
A
L
A
S
AASSSS
D
K
K
A
A
C
E
C
I
K
S
A
A
KNMKP
N
A
Q
L
A
Q
ALPANCGIN
L
P
V
T
IAPNVDCSKVG
44
99.24
100%
-124
- C- -
M044
-
A:
[1-123]
A
I
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
V
N
G
T
G
K
P
P
S
A
C
C
A
G
A
S
A
L
A
S
A
A
S
S
S
S
D
K
K
A
A
C
E
C
I
K
S
A
A
K
N
M
K
P
N
A
Q
L
A
Q
A
L
P
A
N
C
G
I
N
L
P
V
T
I
A
P
N
V
D
C
S
K
V
G
48
98.08
100%
-134
- C- -
M048
-
A:
[1-94]
A
I
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
V
N
G
T
G
K
P
P
S
A
C
C
A
G
A
S
A
L
A
S
A
A
S
S
S
S
D
K
K
A
A
C
E
C
I
K
S
A
A
K
N
M
K
P
N
A
Q
L
A
Q
A
L
P
A
N
C
G
I
N
L
P
V
T
I
A
P
N
V
D
C
S
K
V
G
46
96.31
100%
-127
- C- -
M046
-
A:
[1-95]
A
I
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
V
N
G
T
G
K
P
P
S
A
C
C
A
G
A
S
A
L
A
S
A
A
S
S
S
S
D
K
K
A
A
C
E
C
I
K
S
A
A
K
N
M
K
P
N
A
Q
L
A
Q
A
L
P
A
N
C
G
I
N
L
P
V
T
I
A
P
N
V
D
C
S
K
V
G
49
93.98
100%
-134
- C- -
M049
-
A:
[1-94]
A
I
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
V
N
G
T
G
K
P
P
S
A
C
C
A
G
A
S
A
L
A
S
A
A
S
S
S
S
D
K
K
A
A
C
E
C
I
K
S
A
A
K
N
M
K
P
N
A
Q
L
A
Q
A
L
P
A
N
C
G
I
N
L
P
V
T
I
A
P
N
V
D
C
S
K
V
G