@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 654_t0_PHYPA: (2014-05-12 )
QCSLSQLSQCISAVTQGTNPPPLCCNEVASADFGCFCNLVSRGNYPPAYVSNAVLVPQKCGGEAYSKLKGKTCAGKSYHTGS
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------..--.--......10--...-..--.-.------.------.-20.--.--.....-.30-------.--------.----------.----------......40--.--------.--.-.---...-----.-----.---50-.--.--...--....60....----------....70.-....------...80.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------QC--
S
--
L
S
Q
L
S
Q
C
---
I
S
A
-
V
T--Q-G------T------N-PPP--
L
--
C
C
N
E
V
-AS--------A--------
D
----------
F
----------
G
C
F
C
N
L
V
---S--------R--G-N---Y
P
P
-----
A
-----
Y
---V--S--N--
A
V
L--VPQKCG
G
E
A
Y
----------
S
KLKGKT-CAGK------SYHTGS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
86.28
28%
-90
* C2 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------AI
S
C
--
G
Q
V
A
S
A
I
A
P
C
---
I
S
Y
-
A
R
--
G
Q
G
------
S
------
G
-
P
S
A
--
G
--
C
C
S
G
V
-
R
S
L
N
N
A
ART
T
A
--------
D
----------
R
----------
R
A
A
C
N
C
L
---
K
--------
N
A
A
A
-
G
---
V
S
G
-----
L
-----
N
---
A
--
G
--
N
--
A
A
S
--
I
P
S
K
C
G
V
S
I
P
----------
Y
T
I
S
T
S
T
D
C
--
S
------
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
77.98
30%
-121
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------AID
L
C
GM
S
--
Q
D
E
L
N
E
C
---
K
P
A
-
V
S
--
K
-
E
------
N
------
P
-
T
S
P
S
Q
P
--
C
C
T
A
L
-
Q
H
--------
A
--------
D
----------
F
----------
A
C
L
C
G
Y
K
---
N
--------
S
--
P
-
W
---
L
G
S
-----
F
-----
G
---
V
D
P
E
--
L
--
A
S
A
--
L
P
K
Q
C
G
L
A
N
A
----------
P
-----
T
-
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
69.31
33%
-113
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-62]
-----------------------------------------------------------------------------------------------------------
A
C
--
Q
--
A
S
Q
L
A
V
C
---
A
S
A
-
I
L
--
S
-
G
------
A
------
K
-
P
S
G
--
E
--
C
C
G
N
L
-
R
A
--------
Q
--------
Q
---------------------
G
C
F
C
Q
Y
A
---
K
--------
D
--
P
-
T
---
Y
G
Q
-----------
Y
---
I
--
R
S
P
H
--
A
R
D
--
T
L
T
S
C
G
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
64.76
29%
-116
- C2 -
2RKN
2
DIRL1_ARATH
A:
[8-71]
---------------------------------------------------------------------------------------------------------------
S
--
Q
D
E
L
N
E
C
---
K
P
A
-
V
S
--
K
-
E
------
N
PT----
S
-
P
S
Q
--
P
--
C
C
T
A
L
-
Q
H
--------
A
--------
D
----------
F
----------
A
C
L
C
G
Y
K
---
N
--------
S
--
P
-
W
---
L
-
G
-----
S
-----
F
GVD
P
--
E
--
L
--
A
S
A
--
L
P
K
Q
C
G
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
64.64
31%
-85
- C2 -
1AFH
-
NLTP_MAIZE
A:
[8-78]
------------------------------------------------------------------------------------------------------------------
A
S
A
I
A
P
C
---
I
S
Y
-
A
R
--
G
-
Q
------
G
------
S
G
P
S
A
--
G
--
C
C
S
G
V
-
R
S
--------
L
--------
N
----------
N
A
A
RT
T
A
D
R
R
A
A
C
N
C
-
L
K
---
N
--------
A
A
-
A
-
G
---
V
S
G
-----
L
-----
N
---
A
--
G
--
N
--
A
A
S
--
I
P
S
K
C
G
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
63.52
33%
-57
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[6-76]
---------------------------------------------------------------------------------------------------------------
V
--
Q
G
N
L
A
Q
C
---
I
G
F
-
L
Q
--
K
-
G
------
G
------
V
-
V
P
P
--
S
--
C
C
T
G
V
-
K
N
--------
I
L
NSSRTTA
D
R
R
--------
A
----------
V
C
S
C
L
K
A
---
A
--------
A
--
G
-
A
---
V
R
G
-----
I
-----
N
---
P
--
N
--
N
--
A
E
A
--
L
P
G
K
C
G
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
62.74
36%
-79
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[8-77]
------------------------------------------------------------------------------------------------------------------
S
S
S
L
A
P
C
---
I
P
Y
-
V
R
--
G
-
G
------
G
------
A
-
V
P
P
--
A
--
C
C
N
G
I
-
R
N
--------
V
--------
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
C
N
C
-
L
K
---
Q
--------
L
--
S
A
S
---
V
P
G
-----
V
-----
N
---
P
--
N
--
N
--
A
A
A
--
L
P
G
K
C
G
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
62.34
33%
-110
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[2-63]
-----------------------------------------------------------------------------------------------------------
G
C
--
N
--
A
G
Q
L
T
V
C
---
T
G
A
-
I
A
--
G
-
G
------
A
------
R
-
P
T
A
--
A
--
C
C
S
S
L
-
R
A
--------
Q
-------------------
Q
----------
G
C
F
C
Q
F
A
---
K
--------
D
--
P
-
R
---
Y
G
R
-----------
Y
---
V
--
N
SP
N
--
A
R
K
--
A
V
S
S
C
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
60.64
28%
-105
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------A
G
C
--
N
--
A
G
Q
L
T
V
C
---
T
G
A
-
I
A
--
G
-
G
------
A
------
R
-
P
T
A
--
A
--
C
C
S
S
L
-
R
---------
A
--------
Q
----------
Q
----------
G
C
F
C
Q
F
A
---
K
--------
D
--
P
-
R
---
Y
G
------
R
-----
Y
---
V
--
N
SP
N
--
A
R
K
--
A
V
S
S
C
G
----------------------
I
A
L
P
------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.78
31%
-86
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------A
G
C
--
N
--
A
G
Q
L
T
V
C
---
T
G
A
-
I
A
--
G
-
G
------
A
------
R
-
P
T
A
--
A
--
C
C
S
S
L
-
R
A
--------
Q
--------
Q
---------------------
G
C
F
C
Q
F
A
---
K
--------
D
--
P
-
R
---
Y
G
R
-----
Y
-----
V
---
N
--
S
P-
N
--
A
R
K
--
A
V
S
S
C
G
----------------
I
A
L
P
T
-
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
57.63
28%
-56
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-76]
------------------------------------------------------------------------------------------------------------------
D
S
L
V
R
P
C
---
L
S
Y
-
V
Q
--
G
-
G
------
P
------
G
-
P
S
G
--
Q
--
C
C
D
G
V
-
K
N
--------
L
--------
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
C
N
C
L
K
G
---
I
--------
A
--
R
-
G
---
I
H
N
-----
L
-----
N
---
E
--
D
--
N
--
A
R
S
--
I
P
P
K
C
G
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
52.37
15%
-83
- C4 -
2HFT
-
?
?:
[107-218]
--------------------------------------------------------------------------------------------------------
N
L
G
Q
P
--
T
--
I
Q
S
F
E
Q
V
GT
K
V
N
V
-
T
V
--
E
-
D
------
E
R
T
LVRR
N
-
N
T
F
--
L
--
S
L
R
D
V
-
F
G
--------
K
--------
D
----------
L
----------
I
-
Y
T
L
Y
Y
---
W
--------
K
--
S
-
S
---
G
K
K
-----
T
-----
A
---
K
--
T
--
N
TN
E
F
L
--
I
D
V
D
-
K
G
E
N
Y
C
F
S
V
Q
A
V
IPS
R
T
V
N
R
K
S
-
T
D
S
P
------
V
E
C
M
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
51.46
26%
-75
- C2 -
1T12
-
NLTP1_TOBAC
A:
[8-76]
------------------------------------------------------------------------------------------------------------------
T
S
N
L
A
P
C
---
L
A
Y
-
L
R
--
N
-
T
------
G
--------
P
L
G
--
R
--
C
C
G
G
V
-
K
A
--------
L
--------
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
C
T
C
-
L
K
---
S
--------
A
--
A
G
A
---
I
S
G
-----
I
-----
N
---
L
--
G
--
K
--
A
A
G
--
L
P
S
T
C
G
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
48.96
29%
-157
- C2 -
1SM7
-
?
A:
[45-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
--
Q
--
C
C
N
E
L
-
Y
Q
--------
E
--------
D
----------
Q
----------
V
C
V
C
P
T
L
---
K
Q
A
A
K
S
V
RV
Q
--
G
-
Q
---
H
G
P
-----
F
QST
R
-
I
---
Y
--
Q
--
I
--
A
K
N
--
L
P
N
V
C
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
47.51
19%
-58
- C2 -
1GG3
-
41_HUMAN
A:
[82-187]
------------------------------------------------------------------------------------------------------PDPAQ
L
T
--
E
--
D
I
T
R
Y
Y
L
---
C
L
Q
-
L
R
--
Q
-
D
------
I
------
V
-
A
G
R
--
L
--
P
C
S
F
A
-
T
L
--------
A
--------
L
----------
L
----------
G
S
Y
T
I
Q
S
---
E
--------
L
--
G
-
D
---
Y
D
P
-----
E
LHGVD
Y
---
V
--
S
--
D
--
F
K
L
--
A
P
N
Q
T
---------------
K
E
L
E
E
K
V
-
M
E
L
H
------
K
S
Y
R
S
M
T
P
A
Q
A
D
L
E
F
L
E
N
A
K
K
LSMY----------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
46.81
24%
-151
- C2 -
2DS2
-
?
B:
[7-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
--
Q
--
C
C
N
Q
L
-
R
Q
--------
V
--------
D
----------
R
----------
P
C
V
C
P
V
L
---
R
Q
A
A
Q
Q
V
L
Q
R
--
Q
-
I
---
I
Q
G
P
Q
Q
L
R
R
-----
L
---
F
--
D
--
A
--
A
R
N
--
L
P
N
I
C
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
45.85
21%
-58
- C2 -
3OTK
5
GCNT1_MOUSE
A:
[19-387]
NVN
C
T
K
I
L
Q
GD
P
E
E
I
Q
K
V
K
L
E
I
L
T
V
Q
F
K
K
R
P
R
W
T
P
H
D
Y
I
N
M
T
R
D
C
A
S
F
I
R
T
R
KYIVEPLT
K
E
E
V
G
F
P
I
A
Y
S
I
V
V
H
HK
I
E
M
L
D
R
L
L
R
A
I
YMPQ
N
F
Y
C
I
H
V
DRKAE
E
S
F
L
A
--
A
--
V
Q
G
I
A
S
C
---
F
D
N
-
V
F
--
V
-
A
------
S
------
Q
-
L
E
S
--
V
VY
A
S
W
T
R
-
V
K
--------
A
--------
D
----------
L
----------
N
C
M
K
D
L
Y
---
R
--------
M
----
N
---
A
N
W
-----
K
-----
Y
---
L
--
I
--
N
--
L
S
G
MD
F
P
I
K
T
N
L
E
I
V
----------
R
K
L
K
C
S
T
---
G
E
------
N
N
L
E
T
E
KMPPNKEERWK
K
R
Y
A
V
V
DG
K
L
T
N
TG
I
V
K
A
P
PPLK
T
P
L
F
S
G
S
A
Y
F
V
V
T
R
E
Y
V
G
Y
V
L
EN
E
N
I
Q
K
L
M
E
W
A
QDTYSPDEF
L
W
A
T
I
Q
R
IPEVPGSFPSSNKYDLSDMNAIA
R
F
V
K
W
QYFEGDVSNGAPYPPCS
G
V
H
V
RSVCVFGAGD
L
S
W
M
L
R
QHHLFANKFDMDVD
P
F
A
I
Q
C
L
D
E
H
L
R
R
K
A
L
E
28
Fugue
45.09
21%
-42
- C2 -
2LSE
-
?
A:
[1-101]
------------------------------------------------------------------------------------------------------MQEE
R
K
K
--
L
--
L
E
K
L
E
K
I
---
L
D
E
-
V
T
--
D
-
G
APDEA
R
E
------
R
-
I
E
K
--
L
--
A
K
D
V
K
-
D
E
--------
L
--------
E
----------
E
----------
G
D
A
K
N
M
I
---
E
K
F
------
R
--
D
-
E
---
M
E
Q
-----
M
-----
Y
---
K
--
D
AP
N
--
A
V
M
--
E
Q
L
L
E
E
I
E
K
L
----------
L
K
K
A
G
S
L
-
V
P
R
G
------
S
Y
L
E
H
H
HHHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
40.87
19%
-41
* C4 *
1JMX
1
?
A:
[364-494]
----------------------------------------------------------------------------------------KVE
E
V
K
V
V
PA
F
S
I
A
R
I
G
E
N
G
A
--
S
--
V
P
K
V
Q
G
R
---
F
E
A
-
E
A
W
G
K
-
D
------
A
------
N
-
G
Q
P
--
L
--
R
I
G
Y
L
P
A
S
--------
W
--------
K
----------
V
----------
E
P
F
N
E
R
A
---
V
--------
E
--
D
-
E
DVK
F
A
G
-----
K
-----
M
---
Q
--
A
--
D
--
G
V
F
--
V
P
G
G
A
G
P
N
P
E
----------
R
K
M
-
M
T
N
-
N
A
G
N
L
K
V
I
A
T
L
A
D
G
G
Q
T
G
E
G
H
M
I
V
T
V
Q
R
WNNPPLP----------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
40.04
14%
-94
* C3 *
1EHX
-
?
A:
[1-94]
-------------------------------------------------------------------------------MQDPTINPT
S
I
S
A
K
AGSFAD
T
K
I
T
L
T
PN
G
N
--
T
--
F
N
G
I
S
E
L
---
Q
S
S
Q
Y
T
--
K
-
G
------
T
------
N
-
E
V
T
--
L
--
L
A
S
Y
L
-
N
T
--------
L
--------
P
----------
E
----------
N
T
T
K
T
L
T
FDF
G
--------
V
--
G
-
T
---
K
N
P
---------------
K
--
L
--
T
--
I
T
V
--
L
P
K
D
I
P
G
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QC
S
L
S
Q
L
S
Q
C
I
S
A
V
TQGTNPPP
L
C
C
N
E
V
ASA
D
F
G
C
F
C
N
L
V
SRGNY
P
P
A
Y
VSN
A
V
LVPQKCG
G
E
A
Y
S
KLKGKTCAGKSYHTGS
46
43.65
100%
-7
- C- -
M046
-
A:
[3-118]
Q
C
S
L
S
Q
L
S
Q
C
I
S
A
V
T
Q
G
T
N
P
P
P
L
C
C
N
E
V
A
S
A
D
F
G
C
F
C
N
L
V
S
R
G
N
Y
P
P
A
Y
V
S
N
A
V
L
V
P
Q
K
C
G
G
E
A
Y
S
K
L
K
G
K
T
C
A
G
K
S
Y
H
T
G
S
47
42.16
100%
-9
- C- -
M047
-
A:
[3-118]
Q
C
S
L
S
Q
L
S
Q
C
I
S
A
V
T
Q
G
T
N
P
P
P
L
C
C
N
E
V
A
S
A
D
F
G
C
F
C
N
L
V
S
R
G
N
Y
P
P
A
Y
V
S
N
A
V
L
V
P
Q
K
C
G
G
E
A
Y
S
K
L
K
G
K
T
C
A
G
K
S
Y
H
T
G
S
41
37.33
100%
-6
- C- -
M041
-
A:
[3-112]
Q
C
S
L
S
Q
L
S
Q
C
I
S
A
V
T
Q
G
T
N
P
P
P
L
C
C
N
E
V
A
S
A
D
F
G
C
F
C
N
L
V
S
R
G
N
Y
P
P
A
Y
V
S
N
A
V
L
V
P
Q
K
C
G
G
E
A
Y
S
K
L
K
G
K
T
C
A
G
K
S
Y
H
T
G
S
40
33.21
100%
-6
- C- -
M040
-
A:
[3-112]
Q
C
S
L
S
Q
L
S
Q
C
I
S
A
V
T
Q
G
T
N
P
P
P
L
C
C
N
E
V
A
S
A
D
F
G
C
F
C
N
L
V
S
R
G
N
Y
P
P
A
Y
V
S
N
A
V
L
V
P
Q
K
C
G
G
E
A
Y
S
K
L
K
G
K
T
C
A
G
K
S
Y
H
T
G
S