@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 659_t0_PHYPA: (2014-05-12 )
ACSLQQVAGCLDAVTKGATPTGSCCTQLGQVDAPCFCNLLANGKYSDAYVNNALHVPARCGSNSAAYAKFKGRNCAGYVVP
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------..--.--......10....-..--.--.-20.-------------.......30--------.----------.----------......40.------------...----.-----..----.---50-.--........60........70........80---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------AC--
S
--
L
Q
Q
V
A
G
C
L
D
A
V
T-KG--A--T-P
T
G
-------------
S
C
C
T
QLGQV--------D----------
A
----------
P
C
F
C
N
L
LAN------------GKY----S-----
D
A
----Y---V--N--N
A
L
HVPARCGSNSA
A
Y
A
K
FKGRNCAGYVVP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
89.24
30%
-132
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------------------------AID
L
C
GM
S
--
Q
D
E
L
N
E
C
K
P
A
V
S
-
K
E
NP
T
--
S
-
P
S
Q
-------------
P
C
C
T
A
L
Q
H
A
--------
D
----------
F
----------
A
C
L
C
G
Y
K
N
S
------------
P
W
L
----
G
-----
S
F
----
G
---
V
D
P
E
--
L
A
S
A
L
P
K
Q
C
G
L
A
N
A
P
-------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
79.12
36%
-105
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[2-64]
---------------------------------------------------------------------------------------------------------------------------
G
C
--
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
-
G
G
--
A
--
R
-
P
T
A
-------------
A
C
C
S
S
L
R
A
Q
--------
Q
---------------------
G
C
F
C
Q
F
A
K
D
------------
P
R
Y
----
G
-----
R
-----
Y
---
V
--
N
SP
N
A
R
K
A
V
S
S
C
G
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
77.96
20%
-131
* C3 *
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
--
E
--
A
E
M
L
N
H
C
G
M
Y
L
M
-
K
N
--
L
--
G
-
E
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
--------
D
----------
E
----------
K
C
M
C
P
A
I
M
M
M
L
N
EPMW-----
I
R
M
----
R
-----
D
Q
----
V
---
M
--
S
--
M
A
H
N
L
P
I
E
C
N
--------
L
M
S
Q
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
75.56
28%
-95
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------A
G
C
--
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
-
G
G
--
A
--
R
-
P
T
A
-------------
A
C
C
S
S
L
-
R
A
--------
Q
----------
Q
----------
G
C
F
C
Q
F
A
K
D
------------
P
R
Y
----
G
-----
R
-----
Y
---
V
--
N
SP
N
A
R
K
A
V
S
S
C
G
I
A
L
P
--------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
74.11
29%
-91
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------A
G
C
--
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
-
G
G
--
A
--
R
-
P
T
A
-------------
A
C
C
S
S
L
R
A
---------
Q
----------
Q
----------
G
C
F
C
Q
F
A
K
D
------------
P
R
Y
----
G
-----
R
Y
----
V
---
N
--
S
P-
N
A
R
K
A
V
S
S
C
G
I
A
L
P
--------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
72.84
34%
-101
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-63]
---------------------------------------------------------------------------------------------------------------------------
A
C
--
Q
--
A
S
Q
L
A
V
C
A
S
A
I
L
-
S
G
--
A
--
K
-
P
S
G
-------------
E
C
C
G
N
L
R
A
Q
--------
Q
---------------------
G
C
F
C
Q
Y
A
K
D
------------
P
T
Y
----
G
-----
Q
-----
Y
---
I
--
R
S
P
H
A
R
D
T
L
T
S
C
G
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
72.32
24%
-99
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------AI
S
C
--
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
G
Q
G
--
S
--
G
-
P
S
A
-------------
G
C
C
S
G
V
R
S
L
N
N
A
ART
T
A
D
----------
R
----------
R
A
A
C
N
C
L
K
N
A
A
----------
A
G
V
----
S
-----
G
L
----
N
---
A
--
G
--
N
A
A
S
I
P
S
K
C
G
V
S
I
P
-
Y
T
I
S
T
S
T
D
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
68.18
28%
-128
- C3 -
2RKN
2
DIRL1_ARATH
A:
[8-72]
-------------------------------------------------------------------------------------------------------------------------------
S
--
Q
D
E
L
N
E
C
K
P
A
V
S
-
K
E
--
N
PT
S
-
P
S
Q
-------------
P
C
C
T
A
L
Q
H
A
--------
D
----------
F
----------
A
C
L
C
G
Y
K
N
S
------------
P
W
L
----------
G
S
----
F
GVD
P
--
E
--
L
A
S
A
L
P
K
Q
C
G
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
63.24
29%
-97
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[8-77]
----------------------------------------------------------------------------------------------------------------------------------
S
S
S
L
A
P
C
I
P
Y
V
R
-
G
G
--
G
--
A
-
V
P
P
-------------
A
C
C
N
G
I
R
N
V
--------
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
C
N
C
-
L
K
Q
L
S
-----------
A
S
V
----
P
-----
G
V
----
N
---
P
--
N
--
N
A
A
A
L
P
G
K
C
G
V
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
62.65
29%
-95
- C3 -
1T12
-
NLTP1_TOBAC
A:
[8-76]
----------------------------------------------------------------------------------------------------------------------------------
T
S
N
L
A
P
C
L
A
Y
L
R
-
N
T
--
G
----
P
L
G
-------------
R
C
C
G
G
V
K
A
L
--------
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
C
T
C
-
L
K
S
A
A
-----------
G
A
I
----
S
-----
G
I
----
N
---
L
--
G
--
K
A
A
G
L
P
S
T
C
G
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
59.75
31%
-64
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[6-76]
-------------------------------------------------------------------------------------------------------------------------------
V
--
Q
G
N
L
A
Q
C
I
G
F
L
Q
-
K
G
--
G
--
V
-
V
P
P
-------------
S
C
C
T
G
V
K
N
I
--------
L
----------
N
SSRTTADR
R
A
V
C
S
C
L
K
A
A
A
------------
G
A
V
----
R
-----
G
I
----
N
---
P
--
N
--
N
A
E
A
L
P
G
K
C
G
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
56.23
22%
-62
- C3 -
13PK
2
PGKC_TRYBB
A:
[1-415]
EKKSINECDLKGKKVLIRVDFNVPVKNGKITND
Y
R
I
R
S
A
L
P
T
L
K
K
V
L
T
E
G
G
S
C
V
L
M
S
H
L
G
RPK
G
I
P
M
A
Q
A
G
K
I
R
S
T
GGVPGFQQKATL
K
P
V
A
K
R
L
S
E
L
L
L
R
P
V
T
F
A
PDCLNA
A
D
V
V
S
K
MSPG
D
V
V
--
L
--
L
E
N
V
R
--
F
Y
K
E
E
-
G
S
--
K
--------------------------
K
A
K
--------
D
----------
R
----------
E
A
M
A
K
I
L
A
S
--------------
Y
----
G
-----
D
V
----
Y
---
I
--
S
--
D
A
F
G
T
A
H
R
D
S
A
T
M
T
G
I
P
K
I
L
G
N
G
A
A
G
Y
L
M
E
K
E
I
S
Y
F
A
K
V
L
G
NPPRP
L
V
A
I
V
G
G
A
K
V
S
D
K
I
Q
L
L
D
N
M
L
QRID
Y
L
L
I
G
G
A
M
A
Y
T
F
L
K
A
Q
GYSIGKSKCEESK
L
E
F
A
R
S
L
L
K
K
A
E
D
R
KVQVILPI
D
H
V
C
H
TEFKAVDSPLITEDQNIPEGHMALDIG
P
K
T
I
E
K
Y
V
Q
T
I
G
K
CK
S
A
I
W
N
G
PMGVFEMVPYS
K
G
T
F
A
I
A
K
A
M
G
R
G
T
H
E
HGLM
S
I
I
G
G
G
D
S
A
S
A
A
E
L
S
GEAKRMS
H
V
S
TG
G
G
A
S
L
E
L
L
E
GKTL
P
G
V
T
V
LDDK
7
HHSearch
55.13
24%
-86
- C3 -
1AFH
-
NLTP_MAIZE
A:
[8-78]
----------------------------------------------------------------------------------------------------------------------------------
A
S
A
I
A
P
C
I
S
Y
A
R
-
G
Q
--
G
--
S
G
P
S
A
-------------
G
C
C
S
G
V
R
S
L
--------
N
----------
N
A
A
RT
T
A
D
R
R
A
A
C
N
C
-
L
K
N
A
A
-----------
A
G
V
----
S
-----
G
L
----
N
---
A
--
G
--
N
A
A
S
I
P
S
K
C
G
V
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
54.06
28%
-80
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-76]
----------------------------------------------------------------------------------------------------------------------------------
D
S
L
V
R
P
C
L
S
Y
V
Q
-
G
G
--
P
--
G
-
P
S
G
-------------
Q
C
C
D
G
V
K
N
L
--------
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
A
------------
R
G
I
----
H
-----
N
L
----
N
---
E
--
D
--
N
A
R
S
I
P
P
K
C
G
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
53.45
26%
-144
- C3 -
1S6D
-
2SS8_HELAN
A:
[48-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
-------------
L
C
C
M
Q
L
K
N
L
--------
D
----------
E
----------
K
C
M
C
P
A
I
M
M
M
L
N
---------
E
P
M
WIRM
R
-----
D
Q
----
V
---
M
--
S
--
M
A
H
N
L
P
I
E
C
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
53.34
29%
-152
- C3 -
1SM7
-
?
A:
[45-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
-------------
Q
C
C
N
E
L
Y
Q
E
--------
D
----------
Q
----------
V
C
V
C
P
T
L
K
Q
A
A
K
S
V
RVQ----
G
Q
H
----
G
-----
P
F
QST
R
I
---
Y
--
Q
--
I
A
K
N
L
P
N
V
C
N
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
52.63
29%
-119
- C3 -
2LVF
-
?
A:
[47-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------
S
-------------
E
C
C
E
Q
L
E
G
M
--------
D
----------
E
----------
S
C
R
C
E
G
L
R
M
M
M
R
M
M
Q
Q
K
E---
M
Q
P
----
R
G
E
Q
M
R
R
M
----
M
------
R
--
L
A
E
N
I
P
S
R
C
N
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
48.54
29%
-104
- C3 -
1PSY
-
2SS_RICCO
A:
[63-116]
---------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
-------------
Q
C
C
N
Q
V
K
Q
V
--------
R
----------
D
----------
E
C
Q
C
E
A
I
K
Y
I
AE
D
Q
I
Q
Q
----
G
Q
L
HGEE
S
-----
E
R
----
V
---
A
--
Q
--
R
A
G
E
I
V
S
S
C
G
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
47.59
16%
-69
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
---------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
SQQCRQEVQRKDLSS
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
G
--
E
--
E
V
L
R
M
P
G
D
E
N
Q
Q
-
Q
E
--
S
--
Q
-
Q
L
Q
-------------
Q
C
C
N
Q
V
K
Q
V
--------
R
----------
D
----------
E
C
Q
C
E
A
I
K
Y
I
AE
D
Q
I
Q
Q
G
QLH
G
E
E
----
S
-----
E
R
----
V
---
A
--
Q
--
R
A
G
E
I
V
S
S
C
G
V
R
C
M
R
Q
T
R
T
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
45.21
16%
-95
- C3 -
1XN7
-
FEOC_ECOLI
A:
[1-78]
---------------------------------------------------------------------------------------------------------------------------
M
A
--
S
--
L
I
Q
V
R
D
L
L
A
L
---
R
G
--
R
--
M
-
E
A
A
-------------
Q
I
S
Q
T
L
N
T
--------------------
P
----------
Q
P
M
I
N
A
M
L
Q
------------
Q
L
E
----
S
-----
M
G
----
K
---
A
--
V
--
R
I
Q
E
E
P
D
G
C
L
S
G
S
C
K
S
C
P
E
G
K
A
C
L
R
E
W
W
A
L
R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AC
S
L
Q
Q
V
A
G
C
L
D
A
V
TKGATP
T
G
S
C
C
T
QLGQVD
A
P
C
F
C
N
L
LANGKYS
D
A
YVNN
A
L
HVPARCGSNSA
A
Y
A
K
FKGRNCAGYVVP
46
86.55
100%
-102
- C- -
M046
-
A:
[1-105]
A
C
S
L
Q
Q
V
A
G
C
L
D
A
V
T
K
G
A
T
P
T
G
S
C
C
T
Q
L
G
Q
V
D
A
P
C
F
C
N
L
L
A
N
G
K
Y
S
D
A
Y
V
N
N
A
L
H
V
P
A
R
C
G
S
N
S
A
A
Y
A
K
F
K
G
R
N
C
A
G
Y
V
V
P
49
56.04
100%
-47
- C- -
M049
-
A:
[4-123]
A
C
S
L
Q
Q
V
A
G
C
L
D
A
V
T
K
G
A
T
P
T
G
S
C
C
T
Q
L
G
Q
V
D
A
P
C
F
C
N
L
L
A
N
G
K
Y
S
D
A
Y
V
N
N
A
L
H
V
P
A
R
C
G
S
N
S
A
A
Y
A
K
F
K
G
R
N
C
A
G
Y
V
V
P
44
44.89
100%
-28
- C- -
M044
-
A:
[4-130]
A
C
S
L
Q
Q
V
A
G
C
L
D
A
V
T
K
G
A
T
P
T
G
S
C
C
T
Q
L
G
Q
V
D
A
P
C
F
C
N
L
L
A
N
G
K
Y
S
D
A
Y
V
N
N
A
L
H
V
P
A
R
C
G
S
N
S
A
A
Y
A
K
F
K
G
R
N
C
A
G
Y
V
V
P