@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 662_tIX_PHYPA: (2014-05-12 )
QAQCGGRNLSILAPCLPAAKANVQPSAACCRALSSFATNTGEDCLCAAASSQQQSGAKVEFAKYIPQKCQLTYKAGIVCNGVVIPGGQ
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.--.--.-...--------..30.......--.--40---.----..------.-.....-----------------50.------.-----------.------.-----.-----------.----.------.--60..---..--....--70...----..---...80.......------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QAQCGGRN
L
S
I
L
APCLPAAKAN--V--Q-
P
S
A
--------
A
C
C
R
A
L
S
S
FAT--N--T----G----ED------
C
-
L
CAAA-----------------SSQ------Q-----------Q------S-----G-----------A----K------
V
--
E
F
A
K
---YI--
P
Q
K
C
--
Q
L
T
Y
K----A
G
---
I
V
CN
G
V
VIPGGQ------------------------------------------------------
7
HHSearch
86.24
27%
-98
- C5 -
1T12
-
NLTP1_TOBAC
A:
[4-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
-
T
S
N
L
A
P
C
L
A
Y
L
R
N
T
--
G
----
P
L
G
--------
R
C
C
G
G
V
K
A
L
V
N
--
S
A
R
T
----
T
E
D
R
Q
I
A
------
C
-
T
C
L
K
S
-----------------
A
A
G
------
A
-----------
I
------
S
-----
G
-----------
I
----
N
------
L
--
G
K
A
A
---
G
L
--
P
S
T
C
--
G
V
N
I
P
YKIS
P
S
---
T
D
C
S
K
V
------------------------------------------------------------
3
HHSearch
85.83
32%
-96
- C5 -
1AFH
-
NLTP_MAIZE
A:
[4-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
-
A
S
A
I
A
P
C
I
S
Y
A
R
G
Q
--
G
--
S
G
P
S
A
--------
G
C
C
S
G
V
R
S
L
N
N
A
A
R
--
T
----
T
A
D
R
R
A
A
------
C
-
N
C
L
K
N
-----------------
A
A
A
------
G
-----------
V
------
S
-----
G
-----------
L
----
N
------
A
--
G
N
A
A
---
S
I
--
P
S
K
C
--
G
V
S
I
P
Y
T
I
S
T
S
---
T
D
C
S
R
V
------------------------------------------------------------
29
SP3
85.53
32%
-110
* C5 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
-
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
G
Q
G-
S
--
G
-
P
S
A
--------
G
C
C
S
G
V
R
S
L
N
N
A
A
R
--
T
----
T
----
A
D
R
R
A
A
C
N
C
-
L
K
N
A
A
-----------------
A
G
-------------------
V
------
S
-----
G
-----------
L
----
N
------
A
--
G
N
A
A
---
S
I
--
P
S
K
C
GV
S
I
P
Y
T
IS--
T
S
---
T
D
C
S
R
V
N
-----------------------------------------------------------
5
HHSearch
84.52
29%
-98
- C5 -
2ALG
2
NLTP1_PRUPE
A:
[4-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
-
S
S
S
L
A
P
C
I
P
Y
V
R
G
G
--
G
--
A
-
V
P
P
--------
A
C
C
N
G
I
R
N
V
N
N
L
A
R
--
T
T
P
D
R
Q
----
A
A
------
C
-
N
C
L
K
Q
-----------------
L
S
A
------
S
-----------
V
------
P
-----
G
-----------
V
----
N
------
P
--
N
N
A
A
---
A
L
--
P
G
K
C
--
G
V
S
I
P
YKIS
A
S
---
T
N
C
A
T
-------------------------------------------------------------
1
HHSearch
78.18
23%
-102
- C5 -
1SIY
-
NLTP1_VIGRR
A:
[3-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
-
Q
G
N
L
A
Q
C
I
G
F
L
Q
K
G
--
G
--
V
-
V
P
P
--------
S
C
C
T
G
V
K
N
I
L
N
SS
R
--
T
----
T
ADR
R
A
V
------
C
-
S
C
L
K
A
-----------------
A
A
G
------
A
-----------
V
------
R
-----
G
-----------
I
----
N
------
P
--
N
N
A
E
---
A
L
--
P
G
K
C
--
G
V
N
I
P
YKIS
T
S
---
T
N
C
N
S
-------------------------------------------------------------
6
HHSearch
71.64
32%
-85
- C5 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
-
D
E
L
N
E
C
K
P
A
V
S
K
E
--
N
PT
S
-
P
S
Q
--------
P
C
C
T
A
L
Q
H
A
------------
D
----
F
A
------
C
-
L
C
G
Y
K
-----------------
N
S
P
W
L
----
G
-----------
S
------
F
-----
G
-----------
V
----
D
------
P
--
E
L
A
S
---
A
L
--
P
K
Q
C
--
G
L
A
N
A
----
P
----------------------------------------------------------------------
34
SP3
69.71
15%
-101
- C4 -
1DIH
1
?
?:
[131-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
V
N
V
M
L
K
L
L
E
K
A
A
K
V
M
G
D
Y
T
D
I
E
I
I
E
-
A
H
H
R
H
K
V
D
--
A
----
P
S
G
--------
T
A
L
A
M
G
E
A
I
A
H
--
A
--
L
----
D
----
K
D
------
L
K
D
C
A
V
Y
-----------------
S
R
E
------
G
-----------
H
------
T
-----
G
-----------
E
----
R
------
V
-------------
P
G
T
I
--
G
F
A
T
V
R
A
--
G
D
---
I
V
G
E
H
T
A
M
F
A
D
I
G
E
R
L
E
I
T
H
K
A
SSR-----------------------------------------
18
HHSearch
69.24
30%
-108
- C5 -
1BEA
-
ITRF_MAIZE
A:
[41-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
--------
R
C
C
R
E
L
A
------
D
--
I
----
P
----
A
Y
------
C
-
R
C
T
A
L
-----------------
S
I
L
------
M
D
G
A
I
P
------
P
G
PDA--
Q
-----
L
E
G
R
L
E
D
LPGCP
R
----
E
------
V
Q
R
G
F
A
A
---
T
L
VT
E
A
E
C
--
N
L
A
T
I
----
S
G
---------------------------------------------------------------------
22
Fugue
67.79
30%
-92
- C5 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
S
K
E
NP
T
--
S
-
P
S
Q
--------
P
C
C
T
A
L
Q
H
--------
A
----
D
----
F
A
------
C
-
L
C
G
Y
K
-----------------
N
S
P
------
W
-----------
L
------
G
-----
S
-----------
F
----
G
------
V
D
P
E
L
A
S
---
A
L
--
P
K
Q
C
--
G
L
A
N
A
----
P
T
-----
C
---------------------------------------------------------------
8
HHSearch
66.55
27%
-108
- C5 -
1N89
1
NLT2G_WHEAT
A:
[4-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
Q
L
A
V
C
A
S
A
I
L
S
G
--
A
--
K
-
P
S
G
--------
E
C
C
G
N
L
R
A
Q
-----------------
Q
G
------
C
-
F
C
Q
Y
A
-----------------
K
D
P
------
T
Y----------
G
------
Q
-----
Y
-----------
I
----
R
------
S
--
P
H
A
R
---
D
T
--
L
T
S
C
--
G
L
A
V
----------------------------------------------------------------------------
2
HHSearch
66.42
24%
-92
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[7-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
L
V
R
P
C
L
S
Y
V
Q
G
G
--
P
--
G
-
P
S
G
--------
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
--
S
----
Q
S
D
R
Q
S
A
------
C
-
N
C
L
K
G
-----------------
I
A
R
------
G
-----------
I
------
H
-----
N
-----------
L
----
N
------
E
--
D
N
A
R
---
S
I
--
P
P
K
C
--
G
V
N
L
P
Y
T
I
S
L
N
---
I
D
C
S
--------------------------------------------------------------
13
HHSearch
65.49
27%
-105
- C5 -
1HSS
-
IAA1_WHEAT
A:
[38-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
--------
D
C
C
Q
Q
L
A
------
H
--
I
----
S
----
E
W
------
C
-
R
C
G
A
L
-----------------
Y
S
M
------
L
-----------
D
S
M
Y
K
E
H-GAFP-
R
CR---------
R
----
E
V
V
----
K
--
L
T
A
A
---
S
I
--
T
A
V
C
--
R
L
P
I
----------------------------------------------------------------------------
10
HHSearch
63.87
28%
-95
- C5 -
3OB4
-
?
A:
[429-491]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--------
R
C
C
N
E
L
N
E
F
----
E
--
N
----
N
----
Q
R
------
C
-
M
C
E
A
L
-----------------
Q
Q
I
M
E
N
Q
S
D
R
-----------
L
------
Q
-----
G
RQ
Q
E
Q
------
Q
----
F
------
K
--
R
E
L
R
---
N
L
--
P
Q
Q
C
--
G
L
R
A
------
P
---
Q
R
C
D
L
D
------------------------------------------------------------
31
SP3
62.16
21%
-84
- C4 -
1FAE
1
GUNF_CLOCE
A:
[1-629]
ASSPAN
K
V
Y
Q
D
R
F
E
S
M
Y
S
K
I
K
DPANGYFSEQGIPYHSIETLMVEAPDYGH
V
T
T
S
E
A
M
S
Y
Y
M
W
L
E
A
M
H
G
R
F
SGDF
T
G
F
D
K
S
W
S
V
T
E
Q
YLIPTEKDQP
N
T
S
M
S
R
YDANKP
A
T
Y
A
P
E
F
QDPSKYP
S
P
L
D
TSQ
P
V
G
R
D
PI
N
S
Q
L
T
S
A
Y
GTS
M
L
Y
G
M
HWILDVDNWYGFGARADGTSKP
S
Y
I
N
T
FQRGEQESTWETIPQPCWDEHKFGGQYGFLDLFTKDTGTP
A
K
Q
F
K
Y
T
N
A
P
D
A
D
A
R
A
V
Q
A
T
Y
W
A
D
Q
W
A
K
E
Q
GKSV
S
T
S
V
G
K
A
T
K
M
G
D
Y
LRYSFFDKYFRKIGQPSQAGTGYDAAHYLLSW
Y
Y
A
W
G
G
G
ID
S
T
W
S
W
I
I
G
S
SHNHFGYQN
P
F
A
A
W
V
L
S
TDANFKPKSSN
G
A
S
D
W
A
K
S
L
D
R
Q
L
E
F
Y
Q
W
L
QSAE
G
A
I
A
G
GATNSWNGRYEAVPSGTSTFYG
M
G
Y
V
ENPVYADPGSNTWF
G
M
Q
V
W
S
M
Q
R
V
A
E
L
Y
Y
K
TGD
A
R
A
K
K
L
L
D
K
W
A
K
W
I
N
G
E
I
K
F
N
ADG
T
F
Q
I
PS
T
I
D
W
E
G
QPDTWNPT
Q
G
Y
T
G
N
A
N
L
H
V
K
V
---
V
N
Y
G
T
D
--
L
--
G
-
C
A
S
--------
S
L
A
N
T
L
T
Y
Y
A
A
--
K
--
S
----
G
----
D
E
------
T
-
S
R
Q
N
A
Q
K
L
L
D
A
M
W
N
NYSDSK
G
I
S
T
V
------
E
-----------
Q
------
R
-----
G
-----------
D
----
Y
------
H
--
R
F
L
D
Q
E
V
F
V
--
P
A
G
W
-----------
T
G
---
K
M
P
N
G
D
V
I
K
S
G
V
K
F
I
D
I
R
SKYKQDPE
W
Q
T
M
V
A
A
L
Q
A
G
Q
V
P
T
Q
RLHR
F
W
A
Q
S
E
F
A
V
A
N
G
V
Y
A
I
L
F
PD
16
HHSearch
60.85
21%
-114
- C5 -
2DS2
-
?
B:
[7-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
--------
Q
C
C
N
Q
L
R
Q
--------
V
----
D
----
R
P
------
C
-
V
C
P
V
L
-----------------
R
Q
A
------
A
Q
Q
V
L
Q
R
Q
I---
I
------
Q
-----
G
P
Q
Q
L
R
------
R
----
L
------
F
--
D
A
A
R
---
N
L
--
P
N
I
C
--
N
I
P
-----------------------------------------------------------------------------
20
HHSearch
57.79
26%
-66
- C5 -
1B1U
-
IAAT_ELECO
A:
[41-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
--------
R
C
C
R
Q
L
E
A
--------
I
----
P
----
A
Y
------
C
-
R
C
E
A
V
-----------------
R
I
L
M
D
G
V
V
T
P
SG
Q
H
E
G
RLLQD
L
------
P
-----
G
-----------
C
----
P
R
Q
V
Q
R
A
F
--
A
P
K
L
---
V
T
--
E
V
E
C
--
N
L
A
T
I
----
H
G
---------------------------------------------------------------------
23
Fugue
57.55
24%
-85
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
A
G
Q
L
T
V
C
T
G
A
I
A
G
G
--
A
--
R
-
P
T
A
--------
A
C
C
S
S
L
R
A
-------------
Q
----
Q
G
------
C
-
F
C
Q
F
A
-----------------
K
D
P
------
R
----------------------------------------------------
Y
G
R
---
Y
V
--
N
S
P
-----
N
A
R
----
K
A
---
V
S
S
C
G
I
A
L
P
T
C
H
------------------------------------------------------
28
Fugue
57.19
24%
-80
- C2 -
2LZ0
-
?
A:
[1-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHE
G
E
P
V
V
G
M
D
K
S
L
F
A
G
N
T
V
I
R
E
I
T
--
V
--
Q
-
P
N
I
GLLYDGMF
S
G
C
T
A
L
E
K
L
I
L
-----
T
----
G
----
E
D
------
P
-
S
A
Y
S
A
-----------------
G
D
G
------
L
-----------
R
------
D
-----
G
-----------
A
--------------
D
F
L
I
---
C
V
--
P
E
E
A
--
L
D
R
Y
R
----
R
D
YFW
Q
T
Y
A
A
W
I
Q
P
M
E
Q
------------------------------------------------------
19
HHSearch
55.83
23%
-106
- C5 -
1SM7
-
?
A:
[45-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
--------
Q
C
C
N
E
L
Y
------
Q
--
E
----
D
----
Q
V
------
C
-
V
C
P
T
L
-----------------
K
Q
A
------
A
K
S
V
RV------
Q
------
G
QHG--
P
-----------
F
QST
R
I
------
Y
--
Q
I
A
K
---
N
L
--
P
N
V
C
--
N
M
K
Q
----------------------------------------------------------------------------
17
HHSearch
54.08
26%
-80
- C5 -
2LVF
-
?
A:
[46-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
--------
E
C
C
E
Q
L
E
G
--------
M
----
D
----
E
S
------
C
-
R
C
E
G
L
-----------------
R
M
M
------
M
-----------
R
------
M
M
Q
Q
K
E
M
Q
P
R
G
E
Q
M
R
---
R
----
M
------
M
--
R
L
A
E
---
N
I
--
P
S
R
C
--
N
L
S
-----------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QAQCGGRN
L
S
I
L
APCLPAAKANVQ
P
S
A
A
C
C
R
A
L
S
S
FATNTGED
C
L
CAAASSQQQSGAK
V
E
F
A
K
YI
P
Q
K
C
Q
L
T
Y
KA
G
I
V
CN
G
V
VIPGGQ
42
39.25
100%
-18
- C- -
M042
-
A:
[2-128]
Q
A
Q
C
G
G
R
N
L
S
I
L
A
P
C
L
P
A
A
K
A
N
V
Q
P
S
A
A
C
C
R
A
L
S
S
F
A
T
N
T
G
E
D
C
L
C
A
A
A
S
S
Q
Q
Q
S
G
A
K
V
E
F
A
K
Y
I
P
Q
K
C
Q
L
T
Y
K
A
G
I
V
C
N
G
V
V
I
P
G
G
Q
46
37.77
100%
-19
- C- -
M046
-
A:
[4-140]
Q
A
Q
C
G
G
R
N
L
S
I
L
A
P
C
L
P
A
A
K
A
N
V
Q
P
S
A
A
C
C
R
A
L
S
S
F
A
T
N
T
G
E
D
C
L
C
A
A
A
S
S
Q
Q
Q
S
G
A
K
V
E
F
A
K
Y
I
P
Q
K
C
Q
L
T
Y
K
A
G
I
V
C
N
G
V
V
I
P
G
G
Q