@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 668_tII_BRADI: (2014-05-12 )
ASCDATALSPCVGAIMLGGAVTPGCCARLKAQQGCLCQYARNPSYAGYVGSPRAQGVVQACGLPKPKC
Atome Classification :
(20 SA)
----------------------------------------------------------------....--..--..---.10....--....--20...--...--------...30.-----------..-...--..-.40.------.-.------------....--------.------50...-.....60.-..-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------ASC
D
--
A
T
--
A
L
---
S
P
C
V
G
A
I
--MLGG--A-V
T
P
--
G
C
C
--------
A
R
L
K
-A-----------QQ-G
C
L
--
C
Q
-YARN------P-S------------YAGY--------V------GS
P
R
A
-
Q
G
V
V
Q
ACG-LP-KP-------KC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
92.65
45%
-129
- C5 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
S
G
A
--
K
-
P
S
G
--
E
C
C
--------
G
N
L
R
-
A
-----------
Q
Q
-
G
C
F
--
C
Q
-
Y
A
K
D
------
P
-
T
------------
Y
G
Q
Y
--------
I
------
R
S
P
H
A
-
R
D
T
L
T
S
C
G
-
L
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
84.19
27%
-142
- C5 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
----------------------------------------------------------------------
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
K
E
N
PT
S
-
P
S
Q
--
P
C
C
--------
T
A
L
Q
-
H
-----------
A
D
F
A
C
L
--
C
G
-
Y
K
N
S
------
P
-
W
------------
L
G
S
F
G-------
V
------
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
-
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
82.19
49%
-99
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
G
G
A
--
R
-
P
T
A
--
A
C
C
--------
S
S
L
R
-
A
-----------
Q
Q
-
G
C
F
--
C
Q
-
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
------
N
S
P
N
A
-
R
K
A
V
S
S
C
G
-
I
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
81.43
48%
-99
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
G
G
A
--
R
-
P
T
A
--
A
C
C
--------
S
S
L
R
-
A
-----------
Q
Q
-
G
C
F
--
C
Q
-
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
------
N
S
P
N
A
-
R
K
A
V
S
S
C
G
-
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
81.43
48%
-99
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
G
G
A
--
R
-
P
T
A
--
A
C
C
--------
S
S
L
R
-
A
-----------
Q
Q
-
G
C
F
--
C
Q
-
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
------
N
S
P
N
A
-
R
K
A
V
S
S
C
G
-
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
78.35
28%
-122
- C5 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
----------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
K
G
G
--
V
-
V
P
P
--
S
C
C
--------
T
G
V
K
-
N
I
L
NSSRTTADR
R
A
-
V
C
S
--
C
L
-
K
A
A
A
------
G
-
A
------------
V
R
-
G
--------
I
------
N
P
N
N
A
-
E
A
L
P
G
K
C
G
-
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
77.03
27%
-124
- C5 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------AIDL
C
G
M
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
K
E
N
--
P
-
T
S
P
S
Q
P
C
C
--------
T
A
L
Q
H
A
-----------
D
F
-
A
C
L
--
C
G
-
Y
K
N
S
------
P
-
W
------------
L
G
S
F
G-------
V
------
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
-
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
75.20
34%
-123
- C5 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-----------------------------------------------------------------
T
C
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
G
G
G
--
A
-
V
P
P
--
A
C
C
--------
N
G
I
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
A
-
A
C
N
--
C
---
L
K
Q
------
L
-
S
-------------
A
S
V
PG------
V
------
N
P
N
N
A
-
A
A
L
P
G
K
C
G
-
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
71.62
27%
-126
- C5 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------A
I
S
C
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
G
Q
G
--
S
G
P
S
A
--
G
C
C
--------
S
G
V
R
-
S
-----------
L
N
-
N
A
-------
A
R
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
------
N
A
G
N
A
-
A
S
I
P
S
K
C
G
-
V
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
70.16
29%
-124
- C5 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------------------------------
S
C
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
G
Q
G
--
S
G
P
S
A
--
G
C
C
--------
S
G
V
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
A
-
A
C
N
--
C
---
L
K
N
------
A
-
A
-------------
A
G
V
SG------
L
------
N
A
G
N
A
-
A
S
I
P
S
K
C
G
-
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
68.62
30%
-128
- C5 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
--------------------------------------------------------------------------
D
L
---
S
I
C
L
N
I
L
GG
S
L
G
T
-----
V
D
--
D
C
C
--------
A
L
I
G
-
G
LG
D
I
E
------
A
I
-
V
C
L
--
C
I
-
Q
L
R
A
---------------------
L
G
I
---------
L
------
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
-
R
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
68.32
28%
-117
- C5 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
-----------------------------------------------------------------------
S
--
N
L
---
A
P
C
L
A
Y
L
--
R
N
T
G
----
P
L
G
--
R
C
C
--------
G
G
V
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
C
T
--
C
---
L
K
S
------
A
-
A
-------------
G
A
I
SG------
I
------
N
L
G
K
A
-
A
G
L
P
S
T
C
G
-
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
66.06
21%
-128
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
----------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
G
G
P
--
G
-
P
S
G
--
Q
C
C
--------
D
G
V
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
C
N
--
C
L
-
K
G
I
A
------
R
-
G
------------
I
H
-
N
--------
L
------
N
E
D
N
A
-
R
S
I
P
P
K
C
G
-
V
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
55.70
13%
-133
- C5 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PRG
S
A
L
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
L
L
N
--
V
-
S
L
H
--
E
M
S
--------
R
K
I
S
-
R
-----------
S
R
-
H
C
I
--
R
V
-
Y
L
K
D
------
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
------
S
V
R
D
E
-
R
N
V
I
R
A
A
S
-
N
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
50.14
10%
-140
* C5 *
1TC3
-
TC3A_CAEEL
C:
[1-51]
-------------------------------------------------------------PRG
S
A
L
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
L
L
N
--
V
-
S
L
H
--
E
M
S
--------
R
K
I
S
-
R
-----------
S
R
-
H
C
I
--
R
V
-
Y
L
K
D
------
P
-
V
--------------
S
Y
--------
G
------
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
47.41
10%
-101
- C4 -
3FBI
-
MED31_YEAST
B:
[19-110]
---------------------------------------------------------QNPLPT
R
F
E
V
E
--
L
E
--
F
I
---
Q
S
L
A
N
I
Q
--
Y
V
T
Y
--
L
-
L
T
Q
--
Q
Q
I
--------
W
K
S
P
-
N
-----------
F
K
-
N
Y
L
K
Y
L
E
-
Y
W
C
N
------
P
-
P
------------
Y
S
Q
C
--------
I
------
V
Y
P
N
C
-
L
F
I
L
K
L
L
N
-
G
F
M
E
S
-------
A
I
V
N
EDGLLEGLDELP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
45.86
23%
-109
- C6 -
1PRT
-
TOX5_BORPE
F:
[2-99]
-------------------------------------------------LPTHLYKNFTVQELA
L
K
L
K
--
G
K
--
N
Q
---
E
F
C
L
T
A
F
--
M
S
G
R
--
S
-
L
V
R
--
A
C
L
SDAGHEHD
T
W
F
D
-
T
-----------
M
L
-
G
F
A
--
I
S
A
Y
A
L
K
------
S
-
R
------------
I
A
L
T
--------
V
EDSPYP
G
T
P
G
D
-
L
L
E
L
Q
I
C
P
-
L
--
N
G
-------
Y
C
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
44.12
17%
-88
- C5 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
T
A
G
--
Q
-
L
A
V
--
E
N
G
--------
H
Y
V
V
-
E
-----------
T
L
-
A
R
A
--
C
D
-
G
C
L
N
------
G
-
E
------------
F
A
A
L
--------
I
------
T
G
P
V
H
-
K
G
V
I
N
D
A
G
-
I
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
24
Fugue
42.32
17%
-70
- C5 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
K
--
N
L
--
G
E
---
R
S
Q
V
S
P
R
--
M
R
E
E
--
D
-
H
K
Q
--
L
C
C
--------
M
Q
L
K
-
N
L----------
D
E
-
K
C
M
--
C
P
-
A
I
M
M
M
L
N
EPM
W
-
I
------------
R
M
R
D
--------
Q
------
V
M
S
M
A
-
H
N
L
P
I
E
C
N
-
L
M
-
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
39.41
17%
-81
* C6 *
2KCC
-
A:
[1-84]
----------------------------------------------------------------
M
E
N
D
--
P
T
--
V
L
---
R
S
P
S
A
G
K
--
L
T
Q
Y
--
T
-
V
E
D
--
G
G
H
VEAGSSY-
A
E
M
E
-
V
-----------
M
K
-
M
I
M
--
T
L
-
N
V
Q
E
------
R
-
G
------------
R
V
K
Y
--------
I
K
RP---
G
A
V
L
E
-
A
G
C
V
V
A
R
L
E
L
D
-
D
L
-------
E
H
HHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ASC
D
A
T
A
L
S
P
C
V
G
A
I
MLGGAV
T
P
G
C
C
A
R
L
K
AQQG
C
L
C
Q
YARNPSYAGYVGS
P
R
A
Q
G
V
V
Q
ACGLPKPKC
42
98.47
100%
-153
- C- -
M042
-
A:
[1-84]
A
S
C
D
A
T
A
L
S
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
K
A
Q
Q
G
C
L
C
Q
Y
A
R
N
P
S
Y
A
G
Y
V
G
S
P
R
A
Q
G
V
V
Q
A
C
G
L
P
K
P
K
C
43
97.24
100%
-149
- C- -
M043
-
A:
[1-106]
A
S
C
D
A
T
A
L
S
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
K
A
Q
Q
G
C
L
C
Q
Y
A
R
N
P
S
Y
A
G
Y
V
G
S
P
R
A
Q
G
V
V
Q
A
C
G
L
P
K
P
K
C
39
96.80
100%
-125
- C- -
M039
-
A:
[1-73]
A
S
C
D
A
T
A
L
S
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
K
A
Q
Q
G
C
L
C
Q
Y
A
R
N
P
S
Y
A
G
Y
V
G
S
P
R
A
Q
G
V
V
Q
A
C
G
L
P
K
P
K
C
45
92.98
100%
-136
- C- -
M045
-
A:
[1-105]
A
S
C
D
A
T
A
L
S
P
C
V
G
A
I
M
L
G
G
A
V
T
P
G
C
C
A
R
L
K
A
Q
Q
G
C
L
C
Q
Y
A
R
N
P
S
Y
A
G
Y
V
G
S
P
R
A
Q
G
V
V
Q
A
C
G
L
P
K
P
K
C