@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 669_tII_BRADI: (2014-05-12 )
AGGCNAGQLSVCAVAITSGSPPSAECCSNLRAQQGCLCQYAKDPNYGRYISSPYARQTVASCGIPVPKC
Atome Classification :
(20 SA)
---------------------------------------------------------------.....--..--..---10.-----.....--.-------------..20-.--.-----.......30-.-----------.-----.-.------....40..------.-.------------....--------50----.----....-....60..---------.-------.-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------AGGCN--AG--
Q
L
---
S
-
V
-----
C
A
V
A
I--T-------------SGS--P--P-----
S
A
E
C
C
S
N
L
R
-A-----------Q-----Q-G------
C
L
C
QYAKD------P-N------------YGRY--------I-----S----S
P
Y
A
-
R
Q
T
V
A
SCG---------I-------P-VP-------KC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
96.17
69%
-127
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
---
A
-
V
-----
C
A
S
A
I
--
L
-------------
S
G
A
--
K
--
P
-----
S
G
E
C
C
G
N
L
R
-
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
Y
A
K
D
------
P
-
T
------------
Y
G
Q
Y
--------
I
-----
R
----
S
P
H
A
-
R
D
T
L
T
S
C
G
---------
L
-------
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
94.69
66%
-132
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
-
V
-----
C
T
G
A
I
--
A
-------------
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
----
S
P
N
A
-
R
K
A
V
S
S
C
G
---------
I
-------
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
94.41
66%
-132
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
-
V
-----
C
T
G
A
I
--
A
-------------
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
----
S
P
N
A
-
R
K
A
V
S
S
C
G
---------
I
-------
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
94.38
65%
-132
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
-
V
-----
C
T
G
A
I
--
A
-------------
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
----
S
P
N
A
-
R
K
A
V
S
S
C
G
---------
I
-------
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
79.84
30%
-112
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------A
I
D
L
C
G
MS
Q
D
--
E
L
---
N
-
E
-----
C
K
P
A
V
--
S
-------------
K
E
N
--
P
TS
P
-----
S
Q
P
C
C
T
A
L
Q
H
A
-----------
D
-----
F
-
A
------
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
S
F
G-------
V
-----
D
----
P
E
L
A
-
S
A
L
P
K
Q
C
G
---------
L
-------
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
76.77
28%
-122
- C4 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
----------------------------------------------------------------------
Q
D
--
E
L
---
N
-
E
-----
C
K
P
A
V
--
S
-------------
K
E
N
PT
S
--
P
-----
S
Q
P
C
C
T
A
L
Q
-
H
-----------
A
-----
D
F
A
------
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
S
F
G-------
V
-----
D
----
P
E
L
A
-
S
A
L
P
K
Q
C
G
---------
L
-------
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
70.62
23%
-91
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
----------------------------------------------------------------------
Q
G
--
N
L
---
A
-
Q
-----
C
I
G
F
L
--
Q
-------------
K
G
G
--
V
--
V
-----
P
P
S
C
C
T
G
V
K
-
N
I
L
NSSRTTADR
R
-----
A
-
V
------
C
S
C
L
K
A
A
A
------
G
-
A
------------
V
R
-
G
--------
I
-----
N
----
P
N
N
A
-
E
A
L
P
G
K
C
G
---------
V
-------
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
69.02
24%
-94
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
I
---
A
-
P
-----
C
I
S
Y
A
--
R
-------------
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
-
S
-----------
L
-----
N
-
N
------
A
----
A
R
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
-----
N
----
A
G
N
A
-
A
S
I
P
S
K
C
G
---------
V
-------
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
68.01
29%
-105
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-78]
---------------------------------------------------------------
A
I
T
C
G
--
Q
V
T
S
N
L
---
A
-
P
-----
C
L
A
Y
L
--
R
-------------
N
T
G
-----
P
-----
L
G
R
C
C
G
G
V
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
------
C
T
C
--
L
K
S
------
A
-
A
-------------
G
A
I
SG------
I
-----
N
----
L
G
K
A
-
A
G
L
P
S
T
C
G
---------
V
-------
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
62.79
23%
-76
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
----------------------------------------------------------------------
D
S
--
L
V
---
R
-
P
-----
C
L
S
Y
V
--
Q
-------------
G
G
P
--
G
--
P
-----
S
G
Q
C
C
D
G
V
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
------
C
N
C
L
K
G
I
A
------
R
-
G
------------
I
H
-
N
--------
L
-----
N
----
E
D
N
A
-
R
S
I
P
P
K
C
G
---------
V
-------
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
60.74
23%
-89
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
---------------------------------------------------------------
M
I
T
C
G
--
Q
V
S
S
S
L
---
A
-
P
-----
C
I
P
Y
V
--
R
-------------
G
G
G
--
A
--
V
-----
P
P
A
C
C
N
G
I
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
------
C
N
C
--
L
K
Q
------
L
-
S
-------------
A
S
V
PG------
V
-----
N
----
P
N
N
A
-
A
A
L
P
G
K
C
G
---------
V
-------
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
60.59
17%
-92
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
-
H
-----
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
E
--
D
--
H
-----
K
Q
L
C
C
M
Q
L
K
-
N
L----------
D
-----
E
-
K
------
C
M
C
P
A
I
M
M
M
L
N
EPM
W
-
I
------------
R
M
R
D
--------
Q
-----
V
----
M
S
M
A
-
H
N
L
P
I
E
C
N
---------
L
-------
M
-
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
59.27
27%
-91
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
---------------------------------------------------------------
A
I
S
C
G
--
Q
V
A
S
A
I
---
A
-
P
-----
C
I
S
Y
A
--
R
-------------
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
------
C
N
C
--
L
K
N
------
A
-
A
-------------
A
G
V
SG------
L
-----
N
----
A
G
N
A
-
A
S
I
P
S
K
C
G
---------
V
-------
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
54.34
25%
-102
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
--------------------------------------------------------------------------
D
L
---
S
-
I
-----
C
L
N
I
L
GG
S
-------------
L
G
T
-----------
V
D
D
C
C
A
L
I
G
-
G
-----------
L
G
D
I
E
A
I
-
V
------
C
L
C
I
Q
L
R
A
---------------------
L
G
I
---------
L
-----
N
----
L
N
R
N
L
Q
L
I
L
N
S
C
G
---------
R
-------
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
53.90
18%
-112
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
--
A
G
--
T
L
T
L
L
P
-
V
-----
A
L
R
A
P
--
V
-------------
T
A
G
--
Q
--
L
-----
A
V
E
N
G
H
Y
V
V
-
E
-----------
T
-----
L
-
A
------
R
A
C
D
G
C
L
N
------
G
-
E
------------
F
A
A
L
--------
I
-----
T
----
G
P
V
H
-
K
G
V
I
N
D
A
G
---------
I
-------
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
18
Fugue
53.28
11%
-106
- C4 -
1VD2
-
KPCI_HUMAN
A:
[11-99]
---------------------------------------------------------------
G
P
L
G
S
--
Q
V
--
R
V
---
K
-
A
Y
Y
RG
D
I
M
I
T
H
--
F
-------------
E
P
S
--
I
--
S
-----
F
E
G
L
C
N
E
V
R
-
D
-----------
M
-----
C
-
S
FDN
E
Q
L
F
T
M
K
W
I
D
E
------
E
-
G
------------
D
P
C
T
--------
V
-----
S
----
S
Q
L
E
-
L
E
E
A
F
R
L
Y
E
L
N
KDSEL
L
I
-------
H
-
V
F
-------
P
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
51.29
14%
-97
* C4 *
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PR
G
S
A
L
S
--
D
T
--
E
R
---
A
-
Q
------
L
D
V
M
--
K
-------------
L
L
N
--
V
--
S
-----
L
H
E
M
S
R
K
I
S
-
R
-----------
S
-----
R
-
H
------
C
I
R
V
Y
L
K
D
------
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
-----
S
----
V
R
D
E
-
R
N
V
I
R
A
A
S
---------
N
-------
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
50.65
17%
-76
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LE
G
L
Q
A
D
--
N
V
--
Q
V
---
P
-
G
-----
L
D
P
A
A
--
F
-------------
K
G
---
K
--
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-
D
-----------
E
-----
A
-
P
------
L
L
T
E
L
G
K
D
------
K
-
R
------------
F
Q
L
V
--------
G
I
N
Y
KD
A
----
A
D
N
A
-
R
R
F
L
G
R
Y
G
---------
N
-------
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
47.77
14%
-97
- C4 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
-------------------------------------------------------------ME
A
I
V
G
K
--
V
T
--
E
V
---
N
-
K
DT---
F
W
P
I
V
--
K
A
------------
A
G
D
--
K
--
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-
A
-----------
M
-----
A
-
P
------
K
Y
E
K
L
A
E
E
Y
-----
L
-
D
V
I
----------
F
L
K
L
--------
D
-----
C
----
N
Q
E
N
-
K
T
L
A
K
E
L
G
---------
I
-------
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
43.82
17%
-62
- C3 -
1CWV
-
A:
[393-492]
----------------------------------------------N
R
W
I
Y
D
GGRSLVS
S
L
E
A
S
R
Q
C
Q
--
G
S
--
D
M
---
S
A
V
-----
L
E
S
S
R
--
A
-------------
T
N
G
--
T
--
R
-----
A
P
D
--
G
T
L
W
-
G
-----------
E
-----
W
-
G
------
S
L
T
A
Y
S
S
D
------
W
-
Q
------------
S
G
E
Y
--------
W
-----
V
K
KTS
T
D
F
E
-
T
M
N
M
D
T
G
A
---------
L
Q
P
G
PAYL
A
-
F
P
-------
L
C
A
L
S
I---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGGCNAG
Q
L
S
V
C
A
V
A
ITSGSPP
S
A
E
C
C
S
N
L
R
AQQG
C
L
C
QYAKDPNYGRYISS
P
Y
A
R
Q
T
V
A
SCGIPVPKC
39
99.14
100%
-136
- C- -
M039
-
A:
[1-99]
A
G
G
C
N
A
G
Q
L
S
V
C
A
V
A
I
T
S
G
S
P
P
S
A
E
C
C
S
N
L
R
A
Q
Q
G
C
L
C
Q
Y
A
K
D
P
N
Y
G
R
Y
I
S
S
P
Y
A
R
Q
T
V
A
S
C
G
I
P
V
P
K
C
41
92.66
100%
-121
- C- -
M041
-
A:
[1-96]
A
G
G
C
N
A
G
Q
L
S
V
C
A
V
A
I
T
S
G
S
P
P
S
A
E
C
C
S
N
L
R
A
Q
Q
G
C
L
C
Q
Y
A
K
D
P
N
Y
G
R
Y
I
S
S
P
Y
A
R
Q
T
V
A
S
C
G
I
P
V
P
K
C