@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 671_tII_BRADI: (2014-05-13 )
ATCSPTQLSPCAPAIIGNAAPTAACCGRVKAHPASCLCKYKKDPNLKRYVNSPNGKKLFAACKVRLPSC
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------...--.--..--..---.-10-----....--.-------------..--.--20----------------..-------.......----30-----------.----...------------.-...40..------......--50....-....60-......-------.---.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------ATC--S--PT--QL---S-PC-----A
P
A
I--I-------------GN--A--A-----------------
P
T
-------
A
A
C
CGRV----KA-----------H----
P
A
S
------------
C
-
L
C
KYKKD------P
N
L
K
R
Y
--VNSPNG-
K
K
L
F
A
A
-
C
K
VRLP-------S---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
93.17
48%
-104
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
-
V
C
-----
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-----------------
P
T
-------
A
A
C
C
S
S
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
Q
F
A
K
D
------
P
R
Y
G
R
Y
--
V
N
S
P
N
A
-
R
K
A
V
S
S
-
C
G
I
A
L
P
-------
T
---
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
92.71
47%
-104
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
-
V
C
-----
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-----------------
P
T
-------
A
A
C
C
S
S
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
Q
F
A
K
D
------
P
R
Y
G
R
Y
--
V
N
S
P
N
A
-
R
K
A
V
S
S
-
C
G
I
A
L
P
-------
T
---
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
91.50
49%
-104
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
---------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
-
V
C
-----
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-----------------
P
T
-------
A
A
C
C
S
S
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
Q
F
A
K
D
------
P
R
Y
G
R
Y
--
V
N
S
P
N
A
-
R
K
A
V
S
S
-
C
G
I
A
L
P
-------
T
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
91.04
37%
-115
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------------------------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
---
A
-
V
C
-----
A
S
A
I
--
L
-------------
S
G
--
A
--
K
-----------------
P
S
-------
G
E
C
C
G
N
L
----
R
A
-----------
Q
-----
Q
G
------------
C
-
F
C
Q
Y
A
K
D
------
P
T
Y
G
Q
Y
--
I
R
S
P
H
A
-
R
D
T
L
T
S
-
C
G
L
A
V
P
-------
H
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
77.73
28%
-99
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------AI
D
L
C
GM
S
--
Q
D
--
E
L
---
N
-
E
C
-----
K
P
A
V
--
S
-------------
K
E
NP
T
--
S
-----------------
P
S
-------
Q
P
C
C
T
A
L
----
Q
H
-----------
A
----
D
F
A
------------
C
-
L
C
G
Y
K
N
S
------
P
W
L
G
S
F
G-
V
D
P
E
L
A
-
S
A
L
P
K
Q
-
C
G
L
A
N
A
P------
T
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
77.72
28%
-100
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
-----------------------------------------------------------------------------------------------
Q
D
--
E
L
---
N
-
E
C
-----
K
P
A
V
--
S
-------------
K
E
--
N
PT
S
-----------------
P
S
-------
Q
P
C
C
T
A
L
----
Q
H
-----------
A
----
D
F
A
------------
C
-
L
C
G
Y
K
N
S
------
P
W
L
G
S
F
G-
V
D
P
E
L
A
-
S
A
L
P
K
Q
-
C
G
L
A
N
A
P------
T
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
69.19
24%
-75
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
A
S
--
A
I
---
A
-
P
C
-----
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G----------------
P
S
-------
A
G
C
C
S
G
V
----
R
S
-----------
L
----
N
N
A
ART
T
A
D
R
R
A
A
C
N
C
-
L
K
N
A
A
A
G
V-----
S
G
------
L
N
A
G
N
A
-
A
S
I
P
S
K
-
C
G
V
S
I
P
YTISTST
D
---
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
67.46
26%
-62
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-----------------------------------------------------------------------------------------------
D
S
--
L
V
---
R
-
P
C
-----
L
S
Y
V
--
Q
-------------
G
G
--
P
--
G
-----------------
P
S
-------
G
Q
C
C
D
G
V
----
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
A
------------
C
-
N
C
L
K
G
I
A
------
R
G
I
H
-
N
--
L
N
E
D
N
A
-
R
S
I
P
P
K
-
C
G
V
N
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
66.62
35%
-61
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
----------------------------------------------------------------------------------------
T
C
--
G
--
Q
V
S
S
S
L
---
A
-
P
C
-----
I
P
Y
V
--
R
-------------
G
G
--
G
--
A
-----------------
V
P
-------
P
A
C
C
N
G
I
----
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
A
------------
C
-
N
C
--
L
K
Q
------
L
S
-
A
S
V
PG
V
N
P
N
N
A
-
A
A
L
P
G
K
-
C
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
64.56
32%
-49
- C3 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
------------------------------------------------------------------------------------------------
S
--
N
L
---
A
-
P
C
-----
L
A
Y
L
--
R
-------------
N
T
--
G
--------------------
P
L
-------
G
R
C
C
G
G
V
----
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
A
------------
C
-
T
C
--
L
K
S
------
A
A
-
G
A
I
SG
I
N
L
G
K
A
-
A
G
L
P
S
T
-
C
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
64.42
23%
-100
- C3 -
1HYP
-
?
?:
[6-80]
---------------------------------------------------------------------------------------
P
S
C
--
P
------
D
L
---
S
-
I
C
-----
L
N
I
L
--
G
-------------
G
S
--
L
--
G
-----------------
T
V
-------
D
D
C
C
A
L
I
G
G
LG
D
I
-----------
E
----
A
I
V
------------
C
-
L
C
I
Q
L
R
A
------
L
G
I
-----
L
N
L
N
R
N
-
L
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
NAT
C
PRT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
63.54
29%
-64
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
----------------------------------------------------------------------------------------
S
C
--
G
--
Q
V
A
S
A
I
---
A
-
P
C
-----
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G----------------
P
S
-------
A
G
C
C
S
G
V
----
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
A
------------
C
-
N
C
--
L
K
N
------
A
A
-
A
G
V
SG
L
N
A
G
N
A
-
A
S
I
P
S
K
-
C
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
63.23
25%
-69
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-----------------------------------------------------------------------------------------------
Q
G
--
N
L
---
A
-
Q
C
-----
I
G
F
L
--
Q
-------------
K
G
--
G
--
V
-----------------
V
P
-------
P
S
C
C
T
G
V
----
K
N
I
L
NSSRTTADR
R
-----
A
V
------------
C
-
S
C
L
K
A
A
A
------
G
A
V
R
-
G
--
I
N
P
N
N
A
-
E
A
L
P
G
K
-
C
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
61.89
23%
-106
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
---------------------------------------------------------------------------------------------------
D
L
---
S
-
I
C
-----
L
N
I
L
GG
S
-------------
L
G
--
T
---------------------
V
-------
D
D
C
C
A
L
I
----
G
G
-----------
L
G
D
I
E
A
I
V
------------
C
-
L
C
I
Q
L
R
A
--------
L
G
I
---
L
N
L
N
R
N
L
Q
L
I
L
N
S
-
C
G
R
S
Y
P
-------
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
55.71
29%
-21
- C2 -
2KSS
-
CARS_MYXXA
A:
[21-106]
----------------------------------------------------------------------------------------
M
I
--
Q
--
D
P
--
S
L
---
I
-
I
C
H
DVDG
A
P
V
R
--
I
-------------
G
A
--
K
--
V
K
VVPHSEDGTISQRFLG
Q
T
-------
G
I
V
V
G
L
V
----
F
D
-----------
D
----
P
A
T
----------------
Q
Y
P
D
D
------
P
L
I
Q
V
L
--
V
E
G
L
-
G
-
E
D
L
F
F
P
-
E
E
L
E
L
A
-------
P
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
52.59
15%
-95
- C3 -
1WLJ
1
ISG20_HUMAN
A:
[6-178]
--------------------------------------------E
V
V
A
M
D
C
E
M
V
G
L
G
PHRESGLA
R
C
S
L
V
N
VHGAVL
Y
D
K
F
I
RPEGE
I
T
D
--
Y
--
R
T
--
R
V
---
S
-
G
V
-----
T
P
Q
H
--
M
-------------
V
G
--
A
--
T
-----------------
P
F
-------
A
V
A
R
L
E
I
----
L
Q
-----------
L
----
L
K
G
------------
K
L
V
V
G
H
---------------------
D
L
-
K
H
D
F
Q
A
-
L
K
E
D
M
S
-------
G
---
Y
T
I
Y
D
TSTD
R
L
L
W
R
E
A
KLVS
L
R
V
L
S
E
R
LLHKSIQNSLLGHS
S
V
E
D
A
R
A
T
M
E
L
Y
Q
I
S
Q
R
I
R
A
R
R
GLPRLA-----------------------------------------------------------------------------------------------------------------------------
7
Fugue
52.32
15%
-56
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
--
E
--
A
E
--
M
L
---
N
-
H
C
-----
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
--
E
--
D
-----------------
H
K
-------
Q
L
C
C
M
Q
L
----
K
N
-----------
L
----
D
E
K
------------
C
-
M
C
P
A
I
M
M
M
L
N
EPM
W
I
R
M
R
D
--
Q
V
M
S
M
A
-
H
N
L
P
I
E
-
C
N
L
M
S
Q
-------
P
---
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
47.85
11%
-56
- C3 -
1ELK
-
TOM1_HUMAN
A:
[1-153]
SDFLLGNPFSS
P
V
G
Q
R
I
E
K
A
T
DGSLQSED
W
A
L
N
M
E
I
C
D
I
I
N
E
TEE
G
P
K
D
A
L
R
A
V
K
K
R
I
VGNKN
F
H
E
V
M
L
A
L
T
V
L
E
T
C
V
K
N
CG
H
R
F
H
V
L
V
A
--
S
--
Q
D
--
F
V
---
E
S
V
L
-----
V
R
T
I
--
L
-------------
P
K
--
N
--
N
-----------------
P
P
-------
T
I
V
H
D
K
V
----
L
N
-----------
L
----
I
Q
S
------------
W
-
A
D
A
F
R
S
S
------
P
D
L
T
G
V
-----
V
T
I
-
Y
E
D
L
R
R
-
K
G
L
E
F
P
-------
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
44.07
10%
-78
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
-----------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
--
T
--
A
G
--
T
L
T
L
L
P
-
V
A
-----
L
R
A
P
--
V
-------------
T
A
--
G
--
Q
-----------------
L
A
-------
V
E
N
G
H
Y
V
----
V
E
-----------
T
----
L
A
R
------------
A
--
C
D
G
C
L
N
------
G
E
F
A
A
L
--
I
T
G
P
V
H
-
K
G
V
I
N
D
-
A
G
I
P
F
T
-------
G
---
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
9
Fugue
40.34
5%
-79
- C3 -
2VLG
-
KINA_BACSU
A:
[9-108]
-------------------------------------------------------------------------------T
D
I
H
A
V
L
A
S
N
G
--
R
--
I
I
--
Y
I
---
S
-
A
N
-----
S
K
L
H
--
L
-------------
G
Y
--
L
--
Q
-----------------
G
E
MIGSFLK
T
F
L
H
E
E
D
----
Q
F
-----------
L
----
V
E
S
------------
Y
-
F
Y
N
E
H
H
L
------
M
P
C
T
F
R
--
F
I
K
K
D
H
-
T
I
V
W
V
E
-
A
A
V
E
I
V
-------
E
---
R
E
I
I
L
K
M
K
V
L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ATCSPTQLSPCA
P
A
IIGNAA
P
T
A
A
C
CGRVKAH
P
A
S
C
L
C
KYKKDP
N
L
K
R
Y
VNSPNG
K
K
L
F
A
A
C
K
VRLPSC
39
98.37
100%
-134
- C- -
M039
-
A:
[1-94]
A
T
C
S
P
T
Q
L
S
P
C
A
P
A
I
I
G
N
A
A
P
T
A
A
C
C
G
R
V
K
A
H
P
A
S
C
L
C
K
Y
K
K
D
P
N
L
K
R
Y
V
N
S
P
N
G
K
K
L
F
A
A
C
K
V
R
L
P
S
C
40
98.09
100%
-120
- C- -
M040
-
A:
[1-86]
A
T
C
S
P
T
Q
L
S
P
C
A
P
A
I
I
G
N
A
A
P
T
A
A
C
C
G
R
V
K
A
H
P
A
S
C
L
C
K
Y
K
K
D
P
N
L
K
R
Y
V
N
S
P
N
G
K
K
L
F
A
A
C
K
V
R
L
P
S
C
42
96.73
100%
-123
- C- -
M042
-
A:
[1-166]
A
T
C
S
P
T
Q
L
S
P
C
A
P
A
I
I
G
N
A
A
P
T
A
A
C
C
G
R
V
K
A
H
P
A
S
C
L
C
K
Y
K
K
D
P
N
L
K
R
Y
V
N
S
P
N
G
K
K
L
F
A
A
C
K
V
R
L
P
S
C