@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 672_tII_BRADI: (2014-05-13 )
ATTCNALQLSPCAGAIIGNAAPTAACCSRMKAQQPCLCQYAKDPNLQRYVSSPNGKKVMAACKVPVPSC
Atome Classification :
(20 SA)
---------------------------------------------------------------.....--..--..---10--.....--.-------------..--20-.-.-----.......30-.-----------.-----.-.....40..------..------------..-----..--50....---....60....-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------ATTC
N
--
A
L
--QL---SP--CA
G
A
I--I-------------GN--A--A-
P
-----
T
A
A
C
C
S
RMK-A-----------Q-----Q-P
C
L
C
QYAKD------P
N
------------
L
Q
-----
R
Y
--VSSPNG---
K
K
V
M
A
A
CKVP-VP-------SC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
90.78
55%
-108
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
--
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
--
V
N
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
90.78
55%
-108
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
--
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
--
V
N
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
90.55
56%
-108
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
N
--
A
G
--
Q
L
---
T
V
--
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
--
V
N
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
87.94
45%
-111
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
Q
--
A
S
--
Q
L
---
A
V
--
C
A
S
A
I
--
L
-------------
S
G
--
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
------
P
T
------------
Y
G
-----
Q
Y
--
I
R
S
P
H
A
---
R
D
T
L
T
S
C
G
L
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
74.92
24%
-95
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------A
I
D
L
C
G
MS
Q
D
--
E
L
---
N
E
--
C
K
P
A
V
--
S
-------------
K
E
NP
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
H
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
------
P
W
------------
L
G
-----
S
F
G-
V
D
P
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
68.26
29%
-84
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-78]
---------------------------------------------------------------
A
I
T
C
G
--
Q
V
T
S
N
L
---
A
P
--
C
L
A
Y
L
--
R
-------------
N
T
--
G
----
P
-----
L
G
R
C
C
G
G
V
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
------
A
A
-------------
G
-----
A
I
SG
I
N
L
G
K
A
---
A
G
L
P
S
T
C
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
66.09
27%
-90
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
---------------------------------------------------------------
A
I
S
C
G
--
Q
V
A
S
A
I
---
A
P
--
C
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
------
A
A
-------------
A
-----
G
V
SG
L
N
A
G
N
A
---
A
S
I
P
S
K
C
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
65.56
23%
-96
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
----------------------------------------------------------------------
Q
D
--
E
L
---
N
E
--
C
K
P
A
V
--
S
-------------
K
E
--
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
------
P
W
------------
L
G
-----
S
F
G-
V
D
P
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
64.49
21%
-107
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
--------------------------------------------------------------------------
D
L
---
S
I
--
C
L
N
I
L
GG
S
-------------
L
G
--
T
----------
V
D
D
C
C
A
L
I
G
-
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
--------------------
L
G
-----
I
---
L
N
L
N
R
N
L
--
Q
L
I
L
N
S
C
G
R
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
64.37
30%
-86
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
---------------------------------------------------------------
M
I
T
C
G
--
Q
V
S
S
S
L
---
A
P
--
C
I
P
Y
V
--
R
-------------
G
G
--
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
------
L
S
-------------
A
-----
S
V
PG
V
N
P
N
N
A
---
A
A
L
P
G
K
C
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
63.26
24%
-76
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
I
---
A
P
--
C
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-
S
-----------
L
-----
N
-
N
A
----
A
R
T
------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG
L
N
A
G
N
A
---
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
60.36
23%
-63
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
----------------------------------------------------------------------
D
S
--
L
V
---
R
P
--
C
L
S
Y
V
--
Q
-------------
G
G
--
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
------
R
G
------------
I
H
------
N
--
L
N
E
D
N
A
---
R
S
I
P
P
K
C
G
V
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
58.50
9%
-108
- C3 -
3ZR8
1
?
X:
[1-65]
----------------------------------------------------------------
G
P
T
E
--
K
A
--
A
V
---
K
K
--
M
A
K
A
I
--
M
-------------
A
D
--
P
--
S
-
K
-----
A
D
D
V
Y
Q
K
W
A
-
D
-----------
K
-----
G
-------
Y
T
L
------
T
Q
------------
L
S
-----
D
F
--
L
K
S
K
T
R
GKY
D
R
V
Y
N
G
Y
M
T
Y
-
R
D
-------
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
57.21
21%
-73
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
----------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
--
C
I
G
F
L
--
Q
-------------
K
G
--
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
------
G
A
------------
V
R
------
G
--
I
N
P
N
N
A
---
E
A
L
P
G
K
C
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
55.44
15%
-79
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
--
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
--
E
--
D
-
H
-----
K
Q
L
C
C
M
Q
L
K
-
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
EPM
W
I
------------
R
M
-----
R
D
--
Q
V
M
S
M
A
---
H
N
L
P
I
E
C
N
L
M
-
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
52.12
11%
-83
- C3 -
2KBR
1
USH1C_HUMAN
A:
[1-80]
---------------------------------------------------------------
M
D
R
K
V
--
A
R
--
E
F
---
R
H
--
K
V
D
F
L
--
I
-------------
E
N
--
D
--
A
-
E
-----
K
D
Y
L
Y
D
V
L
R
-
M
-----------
Y
-----
H
-
Q
T
M
D
V
A
V
L
V
------
G
D
------------
L
K
-----
L
V
--
I
N
E
P
S
R
---
L
P
L
F
D
A
I
R
P
L
-
I
P
-------
L
K
H
Q
V
E
Y
D
Q
L
T
PR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
51.32
14%
-92
- C3 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
-------------------------------------------------------------ME
A
I
V
G
K
--
V
T
--
E
V
---
N
K
DT
F
W
P
I
V
--
K
A
------------
A
G
--
D
--
K
-
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-
A
-----------
M
-----
A
-
P
K
Y
E
K
L
A
E
E
Y
-----
L
D
V
I
----------
F
L
-----
K
L
--
D
C
N
Q
E
N
---
K
T
L
A
K
E
L
G
I
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
50.45
15%
-71
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LE
G
L
Q
A
D
--
N
V
--
Q
V
---
P
G
--
L
D
P
A
A
--
F
-------------
K
G
-----
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
------
K
R
------------
F
Q
L
V
G
I
N
Y
K
--
D
A
A
D
N
A
---
R
R
F
L
G
R
Y
G
N
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
49.60
13%
-84
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
--
A
G
--
T
L
T
L
L
P
V
--
A
L
R
A
P
--
V
-------------
T
A
--
G
--
Q
-
L
-----
A
V
E
N
G
H
Y
V
V
-
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
N
------
G
E
------------
F
A
-----
A
L
--
I
T
G
P
V
H
---
K
G
V
I
N
D
A
G
I
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
28
SP3
49.21
11%
-81
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PR
G
S
A
L
S
--
D
T
--
E
R
---
A
Q
---
L
D
V
M
--
K
-------------
L
L
--
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
------
P
V
SYGTSKRAP---
R
R
-----
K
A
--
L
S
V
R
D
E
---
R
N
V
I
R
A
A
S
N
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ATTC
N
A
L
QLSPCA
G
A
IIGNAA
P
T
A
A
C
C
S
RMKAQQP
C
L
C
QYAKDP
N
L
Q
R
Y
VSSPNG
K
K
V
M
A
A
CKVPVPSC
40
100.00
100%
-121
- C- -
M040
-
A:
[1-83]
A
T
T
C
N
A
L
Q
L
S
P
C
A
G
A
I
I
G
N
A
A
P
T
A
A
C
C
S
R
M
K
A
Q
Q
P
C
L
C
Q
Y
A
K
D
P
N
L
Q
R
Y
V
S
S
P
N
G
K
K
V
M
A
A
C
K
V
P
V
P
S
C
42
97.43
100%
-115
- C- -
M042
-
A:
[1-100]
A
T
T
C
N
A
L
Q
L
S
P
C
A
G
A
I
I
G
N
A
A
P
T
A
A
C
C
S
R
M
K
A
Q
Q
P
C
L
C
Q
Y
A
K
D
P
N
L
Q
R
Y
V
S
S
P
N
G
K
K
V
M
A
A
C
K
V
P
V
P
S
C
43
97.18
100%
-121
- C- -
M043
-
A:
[1-100]
A
T
T
C
N
A
L
Q
L
S
P
C
A
G
A
I
I
G
N
A
A
P
T
A
A
C
C
S
R
M
K
A
Q
Q
P
C
L
C
Q
Y
A
K
D
P
N
L
Q
R
Y
V
S
S
P
N
G
K
K
V
M
A
A
C
K
V
P
V
P
S
C