@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 679_tII_BRADI: (2014-05-13 )
MMVAAQCDAGQLVVCAPAILGGAMPTASCCSKLREQEQQGCFCEYLRNPAYAGYINSQTARGAIAACNVTLPQCS
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........--.--10-.-........--20------------..--.----.-.----------.----------...30...---.-----------..---------.---------.40----------.------------..------....-.-.----50...--...------..60......-.---..70-------.-------...----------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
M
V
A
A
QCD--A--
G
--
Q
-
L
V
V
C
A
P
A
I
--L-------------GG--A----M-P----------
T
----------
A
S
C
C
S
K
L
R
---
E
-----------
Q
E
---------Q---------Q
G
-----------
C
------------
F
C
------
E
Y
LR-N-P----AYA
G
Y
--INS------QTA-RG
A
I
A
A
-
C
---
N
VTL-------P-------QCS----------------------------------------------------------------------------------------------
10
HHSearch
83.33
57%
-122
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
--
G
--
Q
-
L
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
----
R
-
P
----------
T
----------
A
A
C
C
S
S
L
R
---
A
-----------
Q
--------------------
Q
G
-----------
C
------------
F
C
------
Q
F
A
K
-
D
-
P
----
R
Y
G
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
-
C
---
G
I
A
L
-------
P
-------
T
C
H
----------------------------------------------------------------------------------------------
9
HHSearch
82.93
51%
-118
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
Q
--
A
--
S
--
Q
-
L
A
V
C
A
S
A
I
--
L
-------------
S
G
--
A
----
K
-
P
----------
S
----------
G
E
C
C
G
N
L
R
---
A
-----------
Q
--------------------
Q
G
-----------
C
------------
F
C
------
Q
Y
A
K
-
D
-
P
----
T
Y
G
Q
Y
--
I
R
S
------
P
H
A
-
R
D
T
L
T
S
-
C
---
G
L
A
V
-------
P
-------
H
C
-----------------------------------------------------------------------------------------------
22
SP3
81.03
52%
-121
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
--
G
--
Q
-
L
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
----
R
-
P
----------
T
----------
A
A
C
C
S
S
L
R
---
A
----------------------
Q
---------
Q
G
-----------
C
------------
F
C
------
Q
F
A
K
-
D
-
P
----
R
Y
G
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
-
C
---
G
I
A
L
-------
P
-------
T
C
H
----------------------------------------------------------------------------------------------
1
Fugue
79.94
53%
-120
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
--
G
--
Q
-
L
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
----
R
-
P
----------
T
----------
A
A
C
C
S
S
L
R
---
A
-----------
Q
Q
---------
G
----------------------
C
------------
F
C
------
Q
F
A
K
-
D
-
P
----
R
Y
G
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
-
C
---
G
I
A
L
-------
P
-------
T
C
H
----------------------------------------------------------------------------------------------
23
SP3
68.69
25%
-99
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
--
A
-
I
A
P
C
I
S
Y
A
--
R
-------------
G
Q
--
G
----
S
G
P
----------
S
----------
A
G
C
C
S
G
V
R
---
S
-----------
L
N
---------
N
---------
A
A
RT
T
A
D
R
R
A
A
C
N
C
------------
L
K
------
N
A
A
A
-
G
V
S
----
G
------
L
N
A
------
G
N
A
-
A
S
I
P
S
K
-
C
---
G
V
S
I
-------
P
YTISTST
D
C
S
RVN-------------------------------------------------------------------------------------------
17
HHSearch
65.94
27%
-101
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
--
Q
V
T
S
--
N
-
L
A
P
C
L
A
Y
L
--
R
-------------
N
T
--
G
------
P
----------
L
----------
G
R
C
C
G
G
V
K
---
A
-----------
L
V
---------
N
S
A
RT
T
E
D
R
Q
I
A
-----------
C
------------
T
C
--------
L
K
-
S
-
A
----
A
-
G
A
I
SG
I
N
L
------
G
K
A
-
A
G
L
P
S
T
-
C
---
G
V
N
I
-------
P
--------------------------------------------------------------------------------------------------------
16
HHSearch
65.83
32%
-90
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
--
Q
V
A
S
--
A
-
I
A
P
C
I
S
Y
A
--
R
-------------
G
Q
--
G
----
S
G
P
----------
S
----------
A
G
C
C
S
G
V
R
---
S
-----------
L
N
N
A
A
RT
T
A
D
R
R
---------
A
A
-----------
C
------------
N
C
--------
L
K
-
N
-
A
----
A
-
A
G
V
SG
L
N
A
------
G
N
A
-
A
S
I
P
S
K
-
C
---
G
V
S
I
-------
P
--------------------------------------------------------------------------------------------------------
3
Fugue
65.67
16%
-125
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
--
E
--
A
--
E
M
L
N
H
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
--
E
----
D
-
H
----------
K
----------
Q
L
C
C
M
Q
L
K
---
N
-----------
L
D
-------------------
E
K
-----------
C
------------
M
C
------
P
A
I
M
-
M
-
M
----
L
N
E
P
M
--
W
I
R
MR
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
-
C
---
N
L
M
S
-------
Q
-------
P
C
Q
M---------------------------------------------------------------------------------------------
2
Fugue
63.88
20%
-102
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
--
Q
--
D
--
E
-
L
N
E
C
K
P
A
V
--
S
-------------
K
E
NP
T
----
S
-
P
----------
S
----------
Q
P
C
C
T
A
L
Q
---
H
-----------
A
D
-------------------
F
A
-----------
C
------------
L
C
------
G
Y
K
N
-
S
-
P
----
W
L
G
S
F
G-
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
-
C
---
G
L
A
N
-------
A
P------
T
C
-----------------------------------------------------------------------------------------------
11
HHSearch
62.60
23%
-100
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
MS
Q
--
D
--
E
-
L
N
E
C
K
P
A
V
--
S
-------------
K
E
--
N
PT--
S
-
P
----------
S
----------
Q
P
C
C
T
A
L
Q
---
H
-----------
A
D
-------------------
F
A
-----------
C
------------
L
C
------
G
Y
K
N
-
S
-
P
----
W
L
G
S
F
G-
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
-
C
---
G
L
A
N
-------
A
P------
T
C
-----------------------------------------------------------------------------------------------
24
SP3
60.37
22%
-112
- C4 -
1HYP
-
?
?:
[6-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
P
--------
D
-
L
S
I
C
L
N
I
L
--
G
-------------
G
S
--
L
----
G
-
T
----------
V
----------
D
D
C
C
A
L
I
G
G
LG
D
-----------
I
E
---------
A
---------
I
V
-----------
C
------------
L
C
------
I
Q
L
R
-
A
--------
L
G
I
--
L
N
L
------
N
R
N
-
L
Q
L
I
L
N
S
C
---
G
R
S
Y
-------
P
SNA----
T
C
P
RT--------------------------------------------------------------------------------------------
14
HHSearch
60.03
26%
-104
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
G
--
N
-
L
A
Q
C
I
G
F
L
--
Q
-------------
K
G
--
G
----
V
-
V
----------
P
----------
P
S
C
C
T
G
V
K
---
N
I
L
NSSRTTADR
R
--------------------
A
V
-----------
C
------------
S
C
------
L
K
A
A
-
A
-
G
----
A
V
R
-
G
--
I
N
P
------
N
N
A
-
E
A
L
P
G
K
-
C
---
G
V
N
I
-------
P
--------------------------------------------------------------------------------------------------------
13
HHSearch
58.73
29%
-91
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
--
Q
--
V
S
S
S
-
L
A
P
C
I
P
Y
V
--
R
-------------
G
G
--
G
----
A
-
V
----------
P
----------
P
A
C
C
N
G
I
R
---
N
-----------
V
N
N
L
A
RT
T
P
D
R
Q
---------
A
A
-----------
C
------------
N
C
--------
L
K
-
Q
-
L
----
S
-
A
S
V
PG
V
N
P
------
N
N
A
-
A
A
L
P
G
K
-
C
---
G
V
S
I
-------
P
--------------------------------------------------------------------------------------------------------
12
HHSearch
57.20
25%
-76
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
S
--
L
-
V
R
P
C
L
S
Y
V
--
Q
-------------
G
G
--
P
----
G
-
P
----------
S
----------
G
Q
C
C
D
G
V
K
---
N
-----------
L
H
N
Q
ARS
Q
S
D
R
Q
---------
S
A
-----------
C
------------
N
C
------
L
K
G
I
-
A
-
R
----
G
I
H
-
N
--
L
N
E
------
D
N
A
-
R
S
I
P
P
K
-
C
---
G
V
N
L
-------
P
--------------------------------------------------------------------------------------------------------
19
HHSearch
54.43
21%
-100
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
P
--------
D
-
L
S
I
C
L
N
I
L
GG
S
-------------
L
G
--
T
-----------------
V
----------
D
D
C
C
A
L
I
G
---
G
-----------
L
G
D
I
E
------
A
---------
I
V
-----------
C
------------
L
C
------
I
Q
L
R
-
A
-------
L
G
I
---
L
N
L
------
N
R
N
L
Q
L
I
L
N
S
-
C
---
G
R
S
Y
-------
P
-------
S
------------------------------------------------------------------------------------------------
26
SP3
49.99
17%
-125
* C4 *
1XPJ
1
?
A:
[1-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKK
L
I
V
-------------
D
-
L
D
G
T
L
T
Q
A
--
N
-------------
T
S
--
D
YRNV
L
-
P
----------
R
----------
L
D
V
I
E
Q
L
R
---
E
-----------
Y
H
---------
Q
---------
L
G
F
E
I
--------
V
------------
I
S
T
ARNMR
T
Y
E
G
-
N
-
V
G
---
K
I
N
I
H
--
T
-
L
------
P
I
I
-
T
E
W
L
D
K
-
H
---
Q
V
P
Y
D
E
I
L
V
GK
P
-------
W
C
G
HD
G
F
Y
I
D
DRAVR
P
S
E
F
A
S
MN
L
E
E
I
H
Q
L
F
E
K
E
K
S-------------------------------------------------------------
30
SP3
44.54
18%
-95
- C5 -
1ATG
2
?
?:
[1-231]
----------------------------------------------------------------------------------------------------------------------E
L
K
V
V
T
ATNF
L
G
T
L
E
Q
L
A
G
Q
F
A
K
Q
TG
H
A
V
V
I
S
S
G
S
S
G
P
V
Y
A
Q
I
V
N
GAPYN
V
F
F
S
AD
E
K
S
P
E
K
L
D
N
Q
GFALPGSRFTY
A
I
G
K
L
V
LWSAKPGLVDNQGKVLAGNGW
R
H
I
A
I
S
NPQIA
P
Y
G
L
A
G
T
Q
V
L
T
H
L
GL
L
D
K
L
T
A
Q
E
R
I
V
E
A
N
-
S
--
V
--
G
--
Q
-
A
---
H
S
Q
T
--
A
-------------
S
G
--
A
----
A
-
D
L
G
F
V
A
LAQII
Q
----------
A
A
--
A
K
I
P
---
G
S
H
W
F
P
P
-----
A
N
---------
Y
---------
Y
E
PI
V
Q
Q
A
-----
V
------------
I
T
------
K
S
T
A
-
E
-
K
A
N
A
E
Q
F
M
S
W
--
M
K
G
------
P
K
A
-
V
A
I
I
K
A
-
A
---
G
Y
V
L
-------
P
-------
Q
------------------------------------------------------------------------------------------------
29
SP3
41.82
16%
-130
* C5 *
1VLW
-
?
A:
[-1-203]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
K
M
E
E
L
F
K
K
H
KI
V
A
V
L
R
A
N
S
--
V
--
E
--
E
-
A
K
E
K
A
L
A
V
--
F
-------------
E
G
--
G
----
V
-
H
----------
L
I
E
I
T
FTVPD
A
D
T
V
I
K
E
L
S
---
F
-----------
L
K
---------
E
---------
K
G
-----------
A
I
I
G
A
G
TVTS
V
E
Q
C
R
------
K
A
V
E
-
S
-
G
----
A
--
E
F
--
I
V
S
------
P
H
L
D
E
E
I
S
Q
F
-
C
K
E
K
G
V
F
Y
M
------
P
-------
G
V
M
T
P
T
E
L
V
K
A
M
K
L
GHT
I
L
K
L
F
PGEVVG
P
Q
F
V
K
A
M
KGPFPN
V
K
F
V
P
T
G
GVNLDN
V
C
E
W
F
K
A
GVL
A
V
G
V
G
SALVKGT
P
D
E
V
R
E
K
A
K
A
F
V
E
K
I
R
G
C---
31
SP3
40.10
17%
-112
- C4 -
3FRU
2
FCGRN_RAT
A:
[1-178]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEP
R
L
P
L
M
Y
H
L
A
A
V
SDLSTGLPS
F
W
A
T
G
W
LGAQ
Q
Y
L
T
Y
N
N
L
--
R
--
Q
--
E
-
A
D
P
C
G
A
W
I
--
W
-------------
E
N
--
Q
----
V
-
S
----------
W
Y
W
--------
E
K
E
T
T
D
L
K
---
S
-----------
K
E
---------
Q
---------
L
-------------------------
F
L
------
E
A
I
R
--------
T
L
E
N
Q
--
I
N
G
------
T
F
T
-
L
Q
G
L
L
G
-
C
---
E
L
A
--------
P
-------
D
N
S
S
L
P
T
A
V
F
A
L
NGEEFMRFNPRTG
N
W
S
G
E
W
P
E
T
D
I
V
G
N
L
W
M
KQ
P
E
A
A
R
K
E
S
E
F
L
LT
S
C
P
E
R
L
L
G
H
L
E
RG
R
Q
N
L
E
W
---------------------
7
Fugue
39.09
22%
-75
- C2 -
3ACP
-
RPN14_YEAST
A:
[1-417]
MT
K
T
I
T
V
A
H
I
QYD
F
K
A
V
L
E
ENDE
N
D
D
E
F
Y
I
N
V
D
KNLN
E
I
K
E
H
K
I
V
VLGNSRGVDAGKG
N
T
F
E
K
VGSH
L
Y
K
A
R
L
DG
H
D
F
L
F
N
T
I
IRDGSKMLK
R
A
D
Y
T
A
V
D
T
A
K
LQ
M
R
R
F
I
L
G
T
TEG
D
I
K
V
L
D
SNFNLQREIDQAHVSEIT
K
L
K
F
F
PSGE
A
L
I
S
S
SQDM
Q
L
K
I
W
S
VKDGSNP
R
T
L
I
GHRATVT
D
I
A
I
I
DRGR
N
V
L
S
A
S
LDGTI
R
L
W
E
CGTGTTI
H
T
F
N
RKENPHDGVN
S
I
A
L
F
V
GTDRQLHEIST
S
K
K
N
N
LEFGTYG
K
Y
V
I
A
G
H
V
--
S
--
G
--
V
-
I
T
V
H
N
-----------------------------------------
V
----------
F
S
K
E
Q
T
I
Q
---
L
-----------
P
S
---------
K
---------
F
T
-----------
C
------------
S
C
------
N
S
L
T
V
D
-
G
----
N
N
A
N
Y
--
I
Y
A
------
G
Y
E
-
N
G
M
L
A
Q
-
W
---
D
L
R
S
-------
P
-------
E
C
P
V
G
E
F
L
I
NEGTPIN
N
V
Y
F
A
AG
A
L
F
V
S
S
G
F
D
T
S
I
K
L
D
I
I
S
D
PESERPAIEFE
T
P
T
F
LVSNDDEVS
Q
F
C
Y
V
SDDES
N
G
E
V
L
E
V
G
K
NN
F
C
A
L
Y
N
LSNP
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
M
V
A
A
QCDA
G
Q
L
V
V
C
A
P
A
I
LGGAMP
T
A
S
C
C
S
K
L
R
E
Q
E
QQ
G
C
F
C
E
Y
LRNPAYA
G
Y
INSQTARG
A
I
A
A
C
N
VTLPQCS
37
91.63
100%
-126
- C- -
M037
-
A:
[1-128]
M
M
V
A
A
Q
C
D
A
G
Q
L
V
V
C
A
P
A
I
L
G
G
A
M
P
T
A
S
C
C
S
K
L
R
E
Q
E
Q
Q
G
C
F
C
E
Y
L
R
N
P
A
Y
A
G
Y
I
N
S
Q
T
A
R
G
A
I
A
A
C
N
V
T
L
P
Q
C
S
39
90.46
100%
-141
- C- -
M039
-
A:
[1-128]
M
M
V
A
A
Q
C
D
A
G
Q
L
V
V
C
A
P
A
I
L
G
G
A
M
P
T
A
S
C
C
S
K
L
R
E
Q
E
Q
Q
G
C
F
C
E
Y
L
R
N
P
A
Y
A
G
Y
I
N
S
Q
T
A
R
G
A
I
A
A
C
N
V
T
L
P
Q
C
S