@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-13 )
AISCGQVNSAVGPCLSYARGTGASPSAACCNGVKSLAAAAKSSADKKAACACLKSAAGRMSGLNAGNAAAIPSKCGVSIPYTISPSVDCSRVN
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..--10--.........----20--.------------.---.-------------------.-----.-----.---------------------...---30........40-----------........50.....--.-----..60------.-------.---------.---------.----------.....70--........80........90..---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AISCGQV--NS--A---VGPCLSYAR----G---T------------G---A-------------------S-----P-----S---------------------AAC---CNGVKSLAAAAK-----------SSADKKAACACLKSA--A-----GRM-------S-------G---------L---------N----------AGNAAAI--PSKCGVSIPYTISPSVDCSRVN---------
11
SP3
93.03
73%
-121
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
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A
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A
R
----
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---
Q
------------
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---
S
-------------------
G
-----
P
-----
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
--
A
-----
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
21
HHSearch
91.15
73%
-117
- C1 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
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C
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----
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---
Q
------------
G
---
S
-------------------
G
-----
P
-----
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
--
A
-----
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
26
HHSearch
88.63
54%
-128
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
---
V
R
P
C
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Y
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----
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---
G
----------------
P
-------------------
G
-----
P
-----
S
---------------------
G
Q
C
---
C
D
G
V
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N
L
H
N
Q
A
R
-----------
S
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--
A
-----
R
G
I
-------
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-------
N
---------
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---------
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----------
E
D
N
A
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--
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N
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P
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N
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S
R
V
----------
22
HHSearch
84.31
59%
-112
- C1 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
--
N
---
L
A
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L
A
Y
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----
N
---
T
------------
G
-----------------------------
P
-----
L
---------------------
G
R
C
---
C
G
G
V
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A
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V
N
S
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-----------
T
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E
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C
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A
--
A
-----
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A
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-------
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-------
G
---------
I
---------
N
----------
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A
A
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--
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N
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S
T
D
C
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K
V
Q
---------
24
HHSearch
82.48
48%
-130
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
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P
Y
V
R
----
G
---
G
----------------
G
-------------------
A
-----
V
-----
P
---------------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
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D
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A
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C
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K
Q
L
--
S
-----
A
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-------
P
-------
G
---------
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---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
25
HHSearch
78.25
42%
-119
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
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G
F
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Q
----
K
---
G
----------------
G
-------------------
V
-----
V
-----
P
---------------------
P
S
C
---
C
T
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N
I
L
N
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R
-----------
T
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A
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C
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K
A
A
--
A
-----
G
A
V
-------
R
-------
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---------
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---------
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----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
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S
T
N
C
N
S
I
N
---------
33
HHSearch
58.21
20%
-141
- C1 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
------------
G
---
P
-------------------
R
-----
L
P
W
P
E
L
K
---------------------
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
--
M
-----
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
----------------------
16
SP3
55.51
20%
-119
- C1 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
G
------------
S
---
Q
-------------------
V
-----
P
-----
E
A
V
L
------------------
R
D
C
---
C
Q
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L
A
H
I
-------------------
S
E
W
C
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C
G
A
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Y
S
M
--
L
-----
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
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L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
37
HHSearch
54.86
29%
-94
- C1 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
----------
R
---
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
---------------------
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
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C
E
A
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Y
I
--
A
-----
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-------
I
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G
QLH-
G
---------
E
E
S
E
R
-----
V
----------
A
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R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
------------------
35
HHSearch
54.17
25%
-103
- C1 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
------------
L
AG
S
P
F
S
E
NQWGPQQGP-------
S
-----
L
-----
R
---------------------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
--
A
-----
K
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------
8
Fugue
51.10
29%
-35
- C1 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
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E
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VQ
R
K
--
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---
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C
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Y
L
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----
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---
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------------
S
---
S
-------------------
R
-----
R
-----
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
K
Y
I
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G
QL
H
-----
G
E
E
-------
S
-------
E
---------
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----------
A
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A
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I
--
V
S
S
C
G
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R
C
M
R
Q
-------
T
R
T
N
---------
9
Fugue
50.16
23%
-75
- C1 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
---
N
LGERSQVSPR
M
R
E
---
E
-------------------
D
-----
H
-----
K
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Q
L
C
---
C
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Q
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EPMW
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-------
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P
C
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M
-----------
36
HHSearch
48.06
20%
-90
- C1 -
3OB4
-
?
A:
[428-485]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---------------------
E
R
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
L
Q
Q
I
--
M
-----
E
N
Q
S
DRL---
Q
-------
G
---------
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---------
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Q
E
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Q
F
-----
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R
E
L
R
N
L
--
P
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C
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A
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----------------------
3
Fugue
47.84
30%
-97
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
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Q
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A
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Q
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A
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--
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-----
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R
Y
-------
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
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G
I
A
L
P
T
-------
C
H
------------
17
SP3
46.83
21%
-106
- C1 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
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E
D
L
RYGPD
V
T
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VPAS
A
T
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T
A
S
LVTR
E
A
G
V
V
A
G
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LGTNGYRVL
D
R
V
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DGARVPPGEAL
M
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L
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A
E
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M
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A
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W
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A
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RKTLPGL
R
A
L
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K
Y
A
V
R
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G
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LGLGD
A
A
L
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V
--
A
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N
---
A
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EKPE
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LDNF
A
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T
A
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Q
R
R
D
S
R
--
A
-----
P
T
V
M
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E
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VL
D
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M-
32
HHSearch
46.39
15%
-114
- C1 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
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----
T
---
R
T
CGV--------
G
---
P
-------------------
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LA
T
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E
M
-----
K
---------------------
A
R
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---
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R
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A
Y
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I
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--
M
-----
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G
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-------
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PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
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--
E
V
E
C
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L
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2
Fugue
44.71
25%
-79
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
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E
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T------------------
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---------
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--
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C
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A
N
A
------
P
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-------------
34
HHSearch
44.63
18%
-102
- C1 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
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M
Y
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M
----
K
---
N
LGER--------
S
---
Q
VSPR
M
R
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E
-----------
D
-----
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-----
K
---------------------
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---
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M
Q
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A
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M
--
L
-----
N
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-------
M
W------
I
---------
R
MR
D
Q
-----
V
----------
M
S
M
A
H
N
L
--
P
I
E
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N
L
M
------------------------
27
HHSearch
44.04
25%
-85
- C1 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
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E
---
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A
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----
K
---
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------------
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---
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T------------------
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P
-----
S
---------------------
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P
C
---
C
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A
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Q
H
A
-------------------
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F
A
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Y
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N
S
P
W
-
L
-----
G
S
F
---------------
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---------
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---------
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----------
P
E
L
A
S
A
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--
P
K
Q
C
G
L
A
N
A
P
---------------------
13
SP3
43.44
20%
-103
- C1 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-----------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
--
S
---
V
V
D
A
L
R
A
V
R
---------------------
N
---
A
-------------------
A
-----
P
-----
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
--
A
-----
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AISCGQVNSAVGPCLSYARGTGASPSAACCNGVKSLAAAAKSSADKKAACACLKSAAGRMSGLNAGNAAAIPSKCGVSIPYTISPSVDCSRVN
39
97.86
100%
-130
- C- -
M039
-
A:
[1-93]
A
I
S
C
G
Q
V
N
S
A
V
G
P
C
L
S
Y
A
R
G
T
G
A
S
P
S
A
A
C
C
N
G
V
K
S
L
A
A
A
A
K
S
S
A
D
K
K
A
A
C
A
C
L
K
S
A
A
G
R
M
S
G
L
N
A
G
N
A
A
A
I
P
S
K
C
G
V
S
I
P
Y
T
I
S
P
S
V
D
C
S
R
V
N
44
96.35
100%
-132
- C- -
M044
-
A:
[1-93]
A
I
S
C
G
Q
V
N
S
A
V
G
P
C
L
S
Y
A
R
G
T
G
A
S
P
S
A
A
C
C
N
G
V
K
S
L
A
A
A
A
K
S
S
A
D
K
K
A
A
C
A
C
L
K
S
A
A
G
R
M
S
G
L
N
A
G
N
A
A
A
I
P
S
K
C
G
V
S
I
P
Y
T
I
S
P
S
V
D
C
S
R
V
N
45
94.93
100%
-129
- C- -
M045
-
A:
[1-124]
A
I
S
C
G
Q
V
N
S
A
V
G
P
C
L
S
Y
A
R
G
T
G
A
S
P
S
A
A
C
C
N
G
V
K
S
L
A
A
A
A
K
S
S
A
D
K
K
A
A
C
A
C
L
K
S
A
A
G
R
M
S
G
L
N
A
G
N
A
A
A
I
P
S
K
C
G
V
S
I
P
Y
T
I
S
P
S
V
D
C
S
R
V
N
46
94.72
100%
-134
- C- -
M046
-
A:
[1-124]
A
I
S
C
G
Q
V
N
S
A
V
G
P
C
L
S
Y
A
R
G
T
G
A
S
P
S
A
A
C
C
N
G
V
K
S
L
A
A
A
A
K
S
S
A
D
K
K
A
A
C
A
C
L
K
S
A
A
G
R
M
S
G
L
N
A
G
N
A
A
A
I
P
S
K
C
G
V
S
I
P
Y
T
I
S
P
S
V
D
C
S
R
V
N