@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-13 )
AVTCGQVGSSIAPCVAYVTGKAAAVSPGCCSGIRGLNNMARTTADRQAACRCLKSMAGSIKALNMGKVAGVPGKCGVNVGFPISMSTDCNKVT
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------.......--..10........----20----.----.---------------------.-------------------.-----.----...-30........40-----------........50.--..--..-..-----------.60------.-------.---------.---------.----------.....70--........80-------------.........90..--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------AVTCGQV--GSSIAPCVAYVT----GK----A----A---------------------A-------------------V-----S----PGC-CSGIRGLNNMAR-----------TTADRQAACRC--LK--SM-AG-----------SI-------K-------A---------L---------N----------MGKVAGV--PGKCGVNVG--------------FPISMSTDCNKVT--------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
92.07
56%
-134
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------
A
I
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Q
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--
T
S
N
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Y
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N
T
---------
G
-----------------------------------------
P
-----
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----
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-
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G
V
K
A
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-----------
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--
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-
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A
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-------
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-------
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---------
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---------
N
----------
L
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K
A
A
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L
--
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N
I
P
--------------
Y
K
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P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
88.76
55%
-138
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
---------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
L
A
P
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I
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Y
V
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----
G
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---------
G
---------------------
A
-------------------
V
-----
P
----
P
A
C
-
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
--
L
K
--
Q
L
-
S
A
-----------
S
V
-------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--------------
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
30
SP3
88.71
55%
-127
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
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V
--
A
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A
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A
R
----
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----
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----
S
---------------------
G
-------------------
P
-----
S
----
A
G
C
-
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
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N
C
--
L
K
--
N
A
-
A
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-----------
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V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
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--
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C
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V
S
I
P
--------------
Y
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T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
86.85
44%
-127
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
----------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
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V
--
Q
G
N
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----
K
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---------
G
---------------------
V
-------------------
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-----
P
----
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-
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-----------
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--
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--
A
A
-
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-------
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---------
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---------
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----------
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--
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N
I
P
--------------
Y
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T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
86.33
56%
-131
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------
A
I
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--
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A
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----
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----
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---------------------
G
-------------------
P
-----
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----
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-
C
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L
N
N
A
A
R
-----------
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--
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--
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A
-
A
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-----------
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-------
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---------
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---------
N
----------
A
G
N
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--
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V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
85.88
44%
-136
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
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R
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C
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---------
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---------------------
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-------------------
P
-----
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----
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-
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A
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-----------
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-----------
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-------
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-------
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---------
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----------
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--
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N
L
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--------------
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V
---------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
57.48
19%
-136
- C2 -
1SM7
-
?
A:
[13-101]
-------------------------------------------------------------------------------------------------------------------------------------------
Q
H
L
R
A
C
Q
Q
W
I
R
----
Q
Q
----
L
AG
S
-
P
F
S
E
NQWGPQQGP---------
S
-------------------
L
-----
R
----
E
Q
C
-
C
N
E
L
Y
Q
E
-------------------
D
Q
V
--
C
V
C
PT
L
K
--
Q
A
-
A
K
-----------
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
53.18
20%
-170
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
----
P
---------------------
R
-------------------
L
P
W
P
E
L
K
----
R
R
C
-
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
--
L
S
--
I
L
-
M
D
-----------
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
51.69
16%
-130
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
---------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
--
G
----
S
---------------------
Q
-------------------
V
-----
P
E
A
V
L
R
D
C
-
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
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C
G
A
--
L
Y
--
S
M
-
L
D
-----------
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
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C
R
L
P
I
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----------------
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D
A
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V
C
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A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------
9
Fugue
51.38
33%
-77
- C2 -
4B8V
3
?
A:
[36-224]
CGSTSNIK
Y
T
V
V
KGDT
L
T
S
I
A
K
K
F
KSG
I
C
N
I
V
S
V
N
KLANPNLIELG
A
T
L
I
I
PENCSNPDNKSCVSTPAEPTETCVPGLPG
S
Y
T
I
V
SGDT
L
T
N
I
S
Q
D
F
NIT
L
D
S
L
I
A
A
N
TQIENPDAIDVG
Q
I
I
T
V
PVCP
S
S
Q
C
E
A
V
--
G
T
Y
N
-----------------------------------------------------------------
I
-----
V
----
A
G
---
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A
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Y
H
-----------
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----------
N
N
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N
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S
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-------
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V
G
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Q
I
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L
P
Q
D
C
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N
V
T
--------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
49.54
15%
-107
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
-------------------------------------------------------------------------------------------------------------------------------------------
K
D
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
--
R
----
R
---------------------
S
T
GEEVLRMPGDENQQQESQ
Q
-----
L
----
Q
Q
C
-
C
N
Q
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K
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V
-------------------
R
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E
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--
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--
Y
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-
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QLH-
G
---------
E
E
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E
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-----
V
----------
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E
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--
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S
C
G
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--
R
--------------
C
M
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Q
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7
Fugue
49.05
15%
-54
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
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GEEVLRMPGDENQQQES
Q
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I
--
V
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M
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R
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N
----------------------------------------------------------------------------------------------------------------------------------------
36
SP3
48.67
15%
-108
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
--------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
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RGTK
A
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I
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D
T
RKTLPGL
R
A
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Y
A
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H
R
LGLGD
A
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--------
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EKPE
L
I
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LDNF
A
V
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R
--
R
D
--
S
R
-
A
P
-----------
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--
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----------
L
Q
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A
A
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Y
---
A
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Y
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L
A
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A
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VL
D
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L
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M------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
48.33
21%
-109
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
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E
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----
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----
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T--------------------
S
-------------------
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-----
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----
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C
-
C
T
A
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Q
H
A
-------------------
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---------
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---------
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----------
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E
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A
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--
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C
G
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A
N
A
--------------
P
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2
Fugue
47.59
20%
-80
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------A
I
D
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--
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N---
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C
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C
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C
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Y
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-------
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-------
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---------
V
---------
D
----------
P
E
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A
S
A
L
--
P
K
Q
C
G
L
A
N
--------------------
A
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
43.04
16%
-128
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------------------------------------------------------------------------------------
E
M
L
N
H
C
G
M
Y
L
M
----
K
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----
L
GERS
Q
VSPR
M
R
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E
-------------
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-------------------
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-----
K
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-
C
M
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--
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--
M
M
-
L
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-----------
E
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-------
M
W------
I
RMR
D
-----
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
42.10
16%
-97
- C2 -
3OB4
-
?
A:
[428-485]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
----
E
R
C
-
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
--
L
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--
Q
I
-
M
E
-----------
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Q
S
DRL---
Q
-------
G
---------
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---------
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Q
E
Q
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F
-----
K
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E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
41.94
12%
-87
- C2 -
1A0P
-
?
?:
[3-292]
-------------------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
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A
L
W
L
E
KNLA
E
N
T
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--
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V
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H
----
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-
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D
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Y
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KFREDDPSA
H
L
-------
K
-------
D
---------
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----------
E
A
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--
L
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A
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E
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L
Y
A
T
G
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
22
HHSearch
40.44
12%
-132
* C2 *
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV
G
----
P
---------------------
R
LA
T
Q
E
--------------
M
-----
K
----
A
R
C
-
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
--
V
R
--
I
L
-
M
D
-----------
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--------------
H
--------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
38.66
22%
-86
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
----
G
G
----
A
----
R
---------------------
P
-------------------------
T
----
A
A
C
-
C
S
S
L
R
----------------------
A
Q
Q
G
C
F
C
--
Q
F
--
A
K
-
D
P
-----------
R
Y
-------
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
---------------------
L
P
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVTCGQVGSSIAPCVAYVTGKAAAVSPGCCSGIRGLNNMARTTADRQAACRCLKSMAGSIKALNMGKVAGVPGKCGVNVGFPISMSTDCNKVT
40
88.80
100%
-138
- C- -
M040
-
A:
[1-124]
A
V
T
C
G
Q
V
G
S
S
I
A
P
C
V
A
Y
V
T
G
K
A
A
A
V
S
P
G
C
C
S
G
I
R
G
L
N
N
M
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
S
M
A
G
S
I
K
A
L
N
M
G
K
V
A
G
V
P
G
K
C
G
V
N
V
G
F
P
I
S
M
S
T
D
C
N
K
V
T
47
34.63
100%
9
- C- -
M047
-
A:
[2-93]
A
V
T
C
G
Q
V
G
S
S
I
A
P
C
V
A
Y
V
T
G
K
A
A
A
V
S
P
G
C
C
S
G
I
R
G
L
N
N
M
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
S
M
A
G
S
I
K
A
L
N
M
G
K
V
A
G
V
P
G
K
C
G
V
N
V
G
F
P
I
S
M
S
T
D
C
N
K
V
T
46
34.40
100%
6
- C- -
M046
-
A:
[2-93]
A
V
T
C
G
Q
V
G
S
S
I
A
P
C
V
A
Y
V
T
G
K
A
A
A
V
S
P
G
C
C
S
G
I
R
G
L
N
N
M
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
S
M
A
G
S
I
K
A
L
N
M
G
K
V
A
G
V
P
G
K
C
G
V
N
V
G
F
P
I
S
M
S
T
D
C
N
K
V
T