@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-13 )
LTCGQVNSAVGPCIAYVRGTGAGPSGACCSGVRSLNSQARSTADKRTACNCLKTAARGVKGLDVGKASSIPSKCGVNIPYTISPNIDCSRV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------..---....--..--.---10.......----.20-----------.---.-------------------.-----.-----..---------------------..---.30........40----------.........50....-..-----------..-----60------.---------.---------.----------......70-.........--------------80........90---------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------LT---CGQV--NS--A---VGPCIAYVR----GT------------G---A-------------------G-----P-----SG---------------------AC---CSGVRSLNSQAR-----------STADKRTACNCLKTA-AR-----------GV-----K-------G---------L---------D----------VGKASSI--PSKCGVNIP--------------YTISPNIDCSRV---------------------------------------------------------------------------------------------------------------------------------------
11
SP3
90.98
70%
-113
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
---
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
------------
G
---
S
-------------------
G
-----
P
-----
S
A
---------------------
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
-----
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
87.68
70%
-113
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
---
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
------------
G
---
S
-------------------
G
-----
P
-----
S
A
---------------------
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
V
-----
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
86.95
61%
-114
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
---
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
G
----------------
P
-------------------
G
-----
P
-----
S
G
---------------------
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
-----------
G
I
-----
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--------------
Y
T
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
80.74
50%
-118
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
---
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
----
G
G
------------
G
-----------------------
A
-----
V
-----
P
P
---------------------
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
-----------
S
V
-----
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--------------
Y
K
I
S
A
S
T
N
C
A
T
V
---------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
79.35
57%
-104
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
---
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
T
------------
G
-----------------------------
P
-----
L
G
---------------------
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
-----------
A
I
-----
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--------------
Y
K
I
S
P
S
T
D
C
S
K
V
---------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
78.61
42%
-112
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
---
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
G
------------
G
-----------------------
V
-----
V
-----
P
P
---------------------
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
-----------
A
V
-----
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--------------
Y
K
I
S
T
S
T
N
C
N
S
I
---------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
58.12
22%
-138
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
------------
G
---
P
-------------------
R
-----
L
P
W
P
E
L
K
R
---------------------
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
-----------
G
A
-----
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
54.04
24%
-110
- C2 -
1SM7
-
?
A:
[14-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
Q
------------
L
AG
S
P
F
S
E
NQWGPQQGP-------
S
-----
L
-----
R
E
---------------------
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
-----------
S
V
-----
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
46.49
24%
-95
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
----------
R
---
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
Q
---------------------
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
-----------
D
Q
-----
I
Q
Q
G
----
Q
---------
L
HGEE
S
E
R
--
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--------------
C
M
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
45.83
27%
-77
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
---
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
E
------------
N
---
P
T------------------
S
-----
P
-----
S
Q
---------------------
P
C
---
C
T
A
L
Q
H
-------------------
A
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
-----------
G
S
-----
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
19
SP3
44.16
19%
-92
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
---
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----
N
-----------------
A
-------------------
A
-----
P
-----
D
L
---------------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
RVL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
14
SP3
44.16
19%
-92
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
---
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----
N
-----------------
A
-------------------
A
-----
P
-----
D
L
---------------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
RVL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
43.92
18%
-102
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV--------
G
---
P
-------------------
R
LA
T
Q
E
M
-----
K
A
---------------------
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
-----------
G
V
-----
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--------------
H
--------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
43.90
24%
-73
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
---
C
R
Q
E
VQ
R
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
------------
S
---
S
-------------------
R
-----
R
-----
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
-----------
D
Q
-----
I
-------
Q
---------
Q
---------
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--------------
R
Q
T
R
T
N
---------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
43.70
24%
-89
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
---
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
E
------------
N
---
P
T------------------
S
-----
P
-----
S
Q
---------------------
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
-----------
S
F
-------------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------
P
--------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
43.10
26%
-93
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
---
C
--
N
--
A
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
---
A
-------------------
R
-----
P
-----
T
A
---------------------
A
C
---
C
S
S
L
R
A
Q
Q
G
C
F
C
-----------
Q
F
A
K
D
P
R
Y
G
R
Y
V
N
S
P
--------------------------------------------------------------
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
--------------
T
-------
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
13
SP3
40.11
19%
-61
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
---
C
--
N
--
A
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
G
------------
A
---
R
-------------------------
P
-----
T
A
---------------------
A
C
---
C
S
S
L
R
A
--------------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
-
R
Y
-----------
G
------
R
-------
Y
---------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
39.03
16%
-72
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
---
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
N
LGERSQVSPR
M
R
E
---
E
-------------------
D
-----
H
-----
K
Q
---------------------
L
C
---
C
M
Q
L
K
N
L
D
E
K
C
M
-------------------
C
P
A
I
M
M
M
-
L
N
-----------
E
P
-----
M
-------
W
---------
I
---------
R
MR
D
Q
V
-----
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------
S
Q
P
C
Q
M
----------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
38.76
15%
-93
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
----
K
N
LGER--------
S
---
Q
VSPR
M
R
E
E
-----------
D
-----
H
-----
K
Q
---------------------
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
-----------
E
P
-----
M
-------
W
IRMR
D
----
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
SP3
37.81
12%
-65
- C2 -
1A0P
-
?
?:
[3-292]
-------------------------------------------------------------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
KN
L
A
E
N
T
L
N
A
Y
--
R
R
--
D
---
L
S
M
M
V
E
W
L
H
----
H
R
------------
G
---
L
-------------------
T
-----
L
-----
A
T
---------------------
A
Q
---
S
D
D
L
Q
A
L
L
A
E
R
L
-----------
S
S
A
R
L
L
S
A
V
R
R
L
F
Q
Y
-
L
Y
R
E
KFREDDPSA
H
L
-----
K
-------
D
---------
L
---------
S
----------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
T
G
L
R
V
S
-
E
L
V
G
L
TMSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
LTCGQVNSAVGPCIAYVRGTGAGPSGACCSGVRSLNSQARSTADKRTACNCLKTAARGVKGLDVGKASSIPSKCGVNIPYTISPNIDCSRV
45
94.45
100%
-123
- C- -
M045
-
A:
[1-92]
L
T
C
G
Q
V
N
S
A
V
G
P
C
I
A
Y
V
R
G
T
G
A
G
P
S
G
A
C
C
S
G
V
R
S
L
N
S
Q
A
R
S
T
A
D
K
R
T
A
C
N
C
L
K
T
A
A
R
G
V
K
G
L
D
V
G
K
A
S
S
I
P
S
K
C
G
V
N
I
P
Y
T
I
S
P
N
I
D
C
S
R
V
39
93.76
100%
-126
- C- -
M039
-
A:
[1-92]
L
T
C
G
Q
V
N
S
A
V
G
P
C
I
A
Y
V
R
G
T
G
A
G
P
S
G
A
C
C
S
G
V
R
S
L
N
S
Q
A
R
S
T
A
D
K
R
T
A
C
N
C
L
K
T
A
A
R
G
V
K
G
L
D
V
G
K
A
S
S
I
P
S
K
C
G
V
N
I
P
Y
T
I
S
P
N
I
D
C
S
R
V
43
93.24
100%
-116
- C- -
M043
-
A:
[1-92]
L
T
C
G
Q
V
N
S
A
V
G
P
C
I
A
Y
V
R
G
T
G
A
G
P
S
G
A
C
C
S
G
V
R
S
L
N
S
Q
A
R
S
T
A
D
K
R
T
A
C
N
C
L
K
T
A
A
R
G
V
K
G
L
D
V
G
K
A
S
S
I
P
S
K
C
G
V
N
I
P
Y
T
I
S
P
N
I
D
C
S
R
V
44
92.52
100%
-127
- C- -
M044
-
A:
[1-92]
L
T
C
G
Q
V
N
S
A
V
G
P
C
I
A
Y
V
R
G
T
G
A
G
P
S
G
A
C
C
S
G
V
R
S
L
N
S
Q
A
R
S
T
A
D
K
R
T
A
C
N
C
L
K
T
A
A
R
G
V
K
G
L
D
V
G
K
A
S
S
I
P
S
K
C
G
V
N
I
P
Y
T
I
S
P
N
I
D
C
S
R
V