@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 688_tV_BRADI: (2014-05-13 )
AGECGATPADQMALKLAPCLTAAKDPEASPSKSCCAAVVDIWGHSTECLCAVLLSNTLKRFGVKVEVAITIPKRCNIANRPIGYKCGDYTLPSLQD
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------...----......---10..---..----....---------20.....----.------.---------------.-----------------30------------........40..-------.-------.-------.-------.----..50.----...------...------.-60----------.-.---------.---.-.-.--------...70-----------.-....--...80......-..90----.....-----------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------AGE----CGAT
P
A
---
D
Q
M
A
---
L
K
----
L
A
P
C
---------LTAAKDP----E------A---------------S-----------------P
S
------------
K
S
C
C
A
A
V
V
D
IWG-------H-------
S
-------
T
-------
E
----
C
L
C
A
V
----
L
L
S
------
N
T
L
------
K
-R-----------F-G---------
V
---
K
-
V
-
E
--------
V
A
I
TI-----------P-KRCN--IANRPIGYKCG-DYTL----PSLQD-----------------------------------------------------------------------------------------------
1
Fugue
78.30
37%
-107
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------A
I
D
L
----
C
G
M
S
--------
Q
---
D
E
----
L
N
E
C
---------
K
P
A
V
S
K
E
N---
P
------
T
---------------
S
-----------------
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
-----------------
D
-------
F
-------
A
----
C
L
C
G
Y
----
K
N
S
------
P
W
L
------
G
-
S
-----------
F
-
G
---------
V
---
D
-
P
-
E
--------
L
A
S
A
L
-----------
P
-
K
Q
C
G
--
L
A
N
A
P
---
T
C
--------------------------------------------------------------------------------------------------------------
17
HHSearch
70.13
26%
-124
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
---------------------------------------------------------------------------------------------------------------------
I
T
C
---
G
Q
V
T
---
S
N
----
L
A
P
C
---------
L
A
Y
L
R
N
T
----
G
----------------------------------------
P
L
------------
G
R
C
C
G
G
V
K
A
L
V
N
-------
S
-------
A
-------
R
T
T
E
D
R
Q
I
A
----
C
T
C
------
L
K
S
-------
A
A
------
G
-
A
-----------
I
S
G
---------
I
---
N
-
L
-
G
--------
K
A
A
G
L
-----------
P
-
S
T
C
G
--
V
N
I
P
--------------------------------------------------------------------------------------------------------------------
32
SP3
67.04
23%
-107
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------
A
I
S
C
---
G
Q
V
A
---
S
A
----
I
A
P
C
---------
I
S
Y
A
R
G
Q
----
G
------
S
---------------
G
-----------------
P
S
------------
A
G
C
C
S
G
V
R
S
L
N
N
-------
A
ART
T
A
--
D
-------
R
-------
R
----
A
A
C
N
C
----
L
K
N
------
A
A
A
------
G
-
V
-----------
S
-
G
---------
L
---
N
-
A
-
G
--------
N
A
A
S
I
-----------
P
-
S
K
C
G
--
V
S
---
I
P
Y
T
I
S
-
T
S
T
---------
D
CSRVN------------------------------------------------------------------------------------------
11
HHSearch
65.58
34%
-101
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
--------------------------------------------------------------------------------------------------------------------
I
D
L
C
---
G
M
S
Q
---
D
E
----
L
N
E
C
---------
K
P
A
V
S
K
E
----
N
P-----
T
---------------
S
-----------------
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
-----------------
D
-------
F
-------
A
----
C
L
C
G
Y
----
K
N
S
------
P
W
L
------
G
-
S
-----------
F
-
G
---------
V
---
D
-
P
-
E
--------
L
A
S
A
L
-----------
P
-
K
Q
C
G
--
L
A
N
A
P
-------------------------------------------------------------------------------------------------------------------
12
HHSearch
65.20
27%
-118
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
---------------------------------------------------------------------------------------------------------------------
I
S
C
---
G
Q
V
A
---
S
A
----
I
A
P
C
---------
I
S
Y
A
R
G
Q
----
G
------
S
---------------
G
-----------------
P
S
------------
A
G
C
C
S
G
V
R
S
L
N
N
-------
A
-------
A
RT
T
A
D
R
R
A
-------
A
----
C
N
C
------
L
K
N
-------
A
A
------
A
-
G
-----------
V
S
G
---------
L
---
N
-
A
-
G
--------
N
A
A
S
I
-----------
P
-
S
K
C
G
--
V
S
I
P
--------------------------------------------------------------------------------------------------------------------
28
HHSearch
64.09
24%
-147
- C4 -
1SM7
-
?
A:
[14-104]
-----------------------------------------------------------------------------------------------------------------------------------
H
----
L
R
A
C
---------
Q
Q
W
I
R
Q
Q
----
L
------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
------------
E
Q
C
C
N
E
L
Y
Q
E
-----------------
D
-------
Q
-------
V
----
C
V
C
P
T
----
L
K
Q
------
A
A
K
S
V
RV--
Q
G
Q
-----------
H
-
G
PFQ------
S
T
R
-
I
-
Y
-
Q
--------
I
A
K
N
L
-----------
P
-
N
V
C
N
--
M
K
Q
--
I
G
T
C
---------------------------------------------------------------------------------------------------------------
29
HHSearch
60.85
24%
-140
- C4 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
-----------------------------------------------------------------------------------------------------------------------------------
P
----
L
P
S
C
---------
R
W
Y
V
T
S
R
TCGI
G
------
P
---------------
R
LP
W
P
E
------------
L
K
------------
R
R
C
C
R
E
L
A
D
I
-----------------
P
-------
A
-------
Y
----
C
R
C
T
A
----
L
S
I
L
M
D
---
G
A
I
------
P
-
P
G
PDAQL
E
G
R
--
L
-
E
D
LPGCP
R
E
-
V
---
Q
-
R
-
G
--------
F
A
A
T
L
VT---------
E
-
A
E
C
N
--
L
A
T
I
--------------------------------------------------------------------------------------------------------------------
41
SP3
58.60
20%
-100
* C4 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------MCY
P
G
Q
----
A
F
Q
V
P
A
L
P
A
C
R
P
L
---
L
R
----
L
Q
C
N
---------
G
S
Q
V
P
E
A
---------------------------------------------
V
L
------------
R
D
C
C
Q
Q
L
A
H
I
-----------------
S
-------
E
-------
W
----
C
R
C
G
A
L
Y
S
-
M
L
D
------
S
M
Y
------
K
-
E
-----------
H
-
G
---------
A
---
F
-
P
-
R
CR
R
E
V
V
K
L
T
A
A
S
I
-----------
T
-
A
V
C
R
L
P
I
V
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
----
A
A
Y
P
D
A----------------------------------------------------------------------------------------------
15
HHSearch
57.77
21%
-118
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
---------------------------------------------------------------------------------------------------------------------
I
T
C
---
G
Q
V
S
---
S
S
----
L
A
P
C
---------
I
P
Y
V
R
G
G
-----------
G
---------------
A
-----------------
V
P
------------
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
-------
Q
-------
A
-------
A
----
C
N
C
------
L
K
Q
-------
L
S
------
A
-
S
-----------
V
P
G
---------
V
---
N
-
P
-
N
--------
N
A
A
A
L
-----------
P
-
G
K
C
G
--
V
S
I
P
--------------------------------------------------------------------------------------------------------------------
22
HHSearch
54.72
28%
-170
- C4 -
2DS2
-
?
B:
[7-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------------
R
Q
C
C
N
Q
L
R
Q
V
-----------------
D
-------
R
-------
P
----
C
V
C
P
V
----
L
R
Q
------
A
A
Q
Q
V
L
Q
R
Q
I
-
I
-----------
Q
-
G
P
Q
Q
L
R
----
R
---
L
-
F
-
D
--------
A
A
R
N
L
-----------
P
-
N
I
C
N
--
I
P
N
I
--------------------------------------------------------------------------------------------------------------------
20
HHSearch
53.45
19%
-153
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-78]
-----------------------------------------------------------------------------------------------------------------------------------
D
----
L
S
I
C
---------
L
N
I
L
G
G
S
----
L
------
G
---------------
T
------------------
V
------------
D
D
C
C
A
L
I
G
G
L
G
D
-------
I
E
------
A
-------
I
-------
V
----
C
L
C
I
Q
----
L
R
A
---------------
L
-
G
-----------
I
-----------
L
---
N
-
L
-
N
--------
R
N
L
Q
L
-----------
I
L
N
S
C
G
--
R
S
-
Y
P
S
N
A
T
C
P
-------------------------------------------------------------------------------------------------------------
13
HHSearch
53.06
20%
-110
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
----------------------------------------------------------------------------------------------------------------------
D
C
---
G
H
V
D
---
S
L
----
V
R
P
C
---------
L
S
Y
V
Q
G
G
-----------
P
---------------
G
-----------------
P
S
------------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
AR----
S
Q
S
D
R
---
Q
-------
S
-------
A
----
C
N
C
L
K
----
G
I
A
---------------
R
-
G
-----------
I
H
N
---------
L
---
N
-
E
-
D
--------
N
A
R
S
I
-----------
P
-
P
K
C
G
--
V
N
L
P
--------------------------------------------------------------------------------------------------------------------
26
HHSearch
52.73
25%
-113
- C4 -
1HSS
-
IAA1_WHEAT
A:
[16-105]
-----------------------------------------------------------------------------------------------------------------------------------
A
----
L
P
A
C
---------
R
P
L
L
R
L
Q
----
C
N
GSQ--
V
P
E
-------------
A
-----------------
V
L
------------
R
D
C
C
Q
Q
L
A
H
I
-----------------
S
-------
E
-------
W
----
C
R
C
G
A
----
L
Y
S
------
M
L
D
S
M
Y
---
K
-
E
-----------
H
--GAFPRCR
R
E
V
---
V
-
K
-
L
--------
T
A
A
S
I
-----------
T
-
A
V
C
R
--
L
P
I
V
V
-------------------------------------------------------------------------------------------------------------------
36
SP3
51.87
14%
-91
* C5 *
1GUY
1
MDH_CHLAA
A:
[1-306]
------------------------------M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
T
S
G
A
----
L
I
K
V
N
A
---
D
I
T
R
---
A
C
----
I
S
Q
A
---------
A
P
L
S
P
N
A
----
V
I
I
M
V--
N
---------------
N
-----------------
P
L
------------
D
A
M
T
Y
L
A
A
E
V
S
G
-------
F
-------
P
-------
K
-------
E
R
V
I
G
Q
A
G
V
L
D
A
A
R
Y
R
T
------
F
I
A
------
M
-
E
-----------
A
-
G
---------
V
---
S
-
V
E
D
--------
V
Q
A
M
L
M
G
G
H
GDE
M
V
P
L
P
-
R
F
S
T
--
I
S
G
I
P
V
S
E
F
I
A
-
P
D
R
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
9
Fugue
51.64
16%
-105
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------P
Y
G
R
----
G
R
T
E
S
G
---
C
Y
Q
Q
---
M
E
E
A
EM
L
N
H
C
---------
G
M
Y
L
M
K
N
----
L
------
G
---------------
E
-----------------
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
-----------------
D
-------
E
-------
K
----
C
M
C
P
A
----
I
M
M
M
L
N
EP-
M
W
I
------
R
-
M
-----------
R
-
D
---------
Q
---
V
-
M
-
S
--------
M
A
H
N
L
-----------
P
-
I
E
C
N
--
L
M
S
Q
----
P
C
Q
-
M
-----------------------------------------------------------------------------------------------------------
16
HHSearch
51.62
22%
-111
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
----------------------------------------------------------------------------------------------------------------------
T
C
---
G
Q
V
Q
---
G
N
----
L
A
Q
C
---------
I
G
F
L
Q
K
G
-----------
G
---------------
V
-----------------
V
P
------------
P
S
C
C
T
G
V
K
N
I
L
N
-------
S
SRTTADR
R
-------
A
-------
V
----
C
S
C
L
------
K
A
-------
A
A
------
G
-
A
-----------
V
R
G
---------
I
---
N
-
P
-
N
--------
N
A
E
A
L
-----------
P
-
G
K
C
G
--
V
N
I
P
--------------------------------------------------------------------------------------------------------------------
27
HHSearch
51.43
17%
-127
- C4 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
----------------------------------------------------------------------------------------------------------------------
S
C
---
E
R
Q
V
D
R
-
V
N
----
L
K
P
C
---------
E
Q
H
I
M
Q
R
----
I
------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
------------
Q
R
C
C
D
E
L
N
E
M
E
--------
N
-------
T
-------
Q
-------
G
----
C
M
C
E
A
----
L
Q
Q
------
I
M
E
N
Q
C---
D
-
R
-----------
L
Q
D
RQ-------
M
V
Q
Q
F
-
K
-
R
--------
E
L
M
S
L
-----------
P
-
Q
Q
C
N
--
F
R
----------------------------------------------------------------------------------------------------------------------
38
SP3
50.52
12%
-90
- C5 -
1ZRN
1
?
?:
[3-222]
YIK
G
I
A
F
D
L
YGTLFDV
H
S
V
V
G
R
C
D
E
A
F
PGR
G
R
E
I
S
A
L
W
R
Q
K
Q
L
E
Y
T
W
L
R
S
L
M
NRYVN
F
Q
Q
A
T
E
D
A
L
R
F
T
C
R
H
L
G
L
D
L
D
A
R
T
R
S
T
L
C
D
AYLRLAPFSE
V
P
D
S
L
R
E
L
K
R
R
G
L
K
L
A
I
L
S
N
G
S
P
---
Q
S
I
D
---
A
V
----
V
S
H
A
GLRDGFD
H
L
L
S
V
D
P
V
Q
----
V
------
Y
---------------
K
-----------------
P
D
------------
N
R
V
Y
E
L
A
E
Q
A
L
G
-------
L
-------
D
-------
R
-------
S
----
A
--
I
L
----
F
V
A
SN
A
W
D
A
T
G
A
------
R
-
Y
-----------
F
-
G
---------
F
---
P
-
T
----------
C
W
I
---------------
N
R
T
G
--
N
V
F
E
E
M
G
Q
T
P
--
D
W
E
V
----
T
S
L
R
A
V
V
E
L
F------------------------------------------------------------------------------------------
30
HHSearch
46.49
18%
-124
- C4 -
1B1U
-
IAAT_ELECO
A:
[16-110]
-----------------------------------------------------------------------------------------------------------------------------------
P
----
L
D
S
C
---------
R
W
Y
V
S
T
R
----
T
CGVGPR
L
A
T
Q
------------
E
-----------------
M
K
------------
A
R
C
C
R
Q
L
E
A
I
-----------------
P
-------
A
-------
Y
----
C
R
C
E
A
----
V
R
I
L
M
D
---
G
V
V
------
T
-
P
SG
Q
H
E
G
RLLQD
L
P
G
CP
R
Q
-----
V
Q
--
R
A
F
-
A
--------
P
K
L
V
T
-----------
E
-
V
E
C
N
--
L
A
T
I
H
G
------------------------------------------------------------------------------------------------------------------
21
HHSearch
46.15
16%
-107
- C4 -
1S6D
-
2SS8_HELAN
A:
[9-97]
---------------------------------------------------------------------------------------------------------------------
S
G
C
---
Y
Q
Q
M
E
E
A
E
M
----
L
N
H
C
---------
G
M
Y
L
M
K
N
----
L
------
G
ERSQVSPR
M
R
E
E
---
D
-----------------
H
K
------------
Q
L
C
C
M
Q
L
K
N
L
-----------------
D
-------
E
-------
K
----
C
M
C
P
A
----
I
M
M
------
M
L
N
------
E
-
P
-----------
M
W
I
RMR
D
-----
Q
---
V
-
M
-
S
--------
M
A
H
N
L
-----------
P
-
I
E
C
N
--
L
M
----------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGAT
P
A
D
Q
M
A
L
K
L
A
P
C
LTAAKDPEASP
S
K
S
C
C
A
A
V
V
D
IWGH
S
T
E
C
L
C
A
V
L
L
S
N
T
L
K
RFG
V
K
V
E
V
A
I
TIPKRCNIANRPIGYKCGDYTLPSLQD
43
85.57
100%
-145
- C- -
M043
-
A:
[1-122]
A
G
E
C
G
A
T
P
A
D
Q
M
A
L
K
L
A
P
C
L
T
A
A
K
D
P
E
A
S
P
S
K
S
C
C
A
A
V
V
D
I
W
G
H
S
T
E
C
L
C
A
V
L
L
S
N
T
L
K
R
F
G
V
K
V
E
V
A
I
T
I
P
K
R
C
N
I
A
N
R
P
I
G
Y
K
C
----------
42
84.24
100%
-141
- C- -
M042
-
A:
[1-122]
A
G
E
C
G
A
T
P
A
D
Q
M
A
L
K
L
A
P
C
L
T
A
A
K
D
P
E
A
S
P
S
K
S
C
C
A
A
V
V
D
I
W
G
H
S
T
E
C
L
C
A
V
L
L
S
N
T
L
K
R
F
G
V
K
V
E
V
A
I
T
I
P
K
R
C
N
I
A
N
R
P
I
G
Y
K
C
----------
46
75.85
100%
-103
- C- -
M046
-
A:
[1-136]
A
G
E
C
G
A
T
P
A
D
Q
M
A
L
K
L
A
P
C
L
T
A
A
K
D
P
E
A
S
P
S
K
S
C
C
A
A
V
V
D
I
W
G
H
S
T
E
C
L
C
A
V
L
L
S
N
T
L
K
R
F
G
V
K
V
E
V
A
I
T
I
P
K
R
C
N
I
A
N
R
P
I
G
Y
K
C
G
D
Y
T
L
P
S
L
Q
D