@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-13 )
SSDVCTVVSPVLESCYIALQSGESFMKSESVCCKSLEILENRIRDSDHQFTRYAVCECFKASDNDKQVLVNENLLEVQVLCGPHVPYPITSYSDCLQYADEEIARTAL
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----..-----...-....20..--------...---...30.....--...40.------..-.---....50......---..60....-...-.---70-....----.-...80..----..--....-----------------90----------------.........100.......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSDVCTVVSP------VL-----ESC-YIALQSGE--------SFM---KSESVCCKSL--EILENR------IR-D---SDHQFTRYAVCE---CFKASDND-KQV-L---VN-ENLL----E-VQVLCGP----HV--PYPI-----------------T-----------------SYSDCLQYAD-EEIARTAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
95.13
29%
-112
- C3 -
1AFH
-
NLTP_MAIZE
A:
[4-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
A
S
------
A
I
-----
A
P
C
-
I
S
Y
A
R
G
Q
G
--------
S
-----
G
P
S
A
G
C
C
S
G
V
--
R
S
L
N
N
A
------
A
R
-
T
---
T
---
A
D
R
R
A
A
C
N
---
C
L
K
N
A
A
A
---
G
V
S
G
---
L
N
A
G
N
A
A
----
S
-
I
P
S
K
C
G
V
----
S
I
--
P
Y
T
I
-----------------
S
-----------------
T
S
T
D
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
93.13
30%
-109
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[4-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
S
S
------
S
L
-----
A
P
C
-
I
P
Y
V
R
G
G
G
--------------
A
V
P
P
A
C
C
N
G
I
--
R
N
V
N
N
L
------
A
R
-
T
---
T
---
P
D
R
Q
A
A
C
N
---
C
L
K
Q
L
S
---
A
S
V
P
G
---
V
N
P
N
N
A
A
----
A
-
L
P
G
K
C
G
V
----
S
I
--
P
Y
K
I
-----------------
S
-----------------
A
S
T
N
C
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
92.21
27%
-118
- C3 -
1T12
-
NLTP1_TOBAC
A:
[4-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
T
S
------
N
L
-----
A
P
C
-
L
A
Y
L
R
N
T
G
---------------
P
L
G
R
C
C
G
G
V
--
K
A
L
V
N
S
------
A
R
-
T
------
T
E
D
R
Q
I
A
C
T
---
C
L
K
S
A
A
---
G
A
I
S
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---
I
N
L
G
K
A
A
----
G
-
L
P
S
T
C
G
V
----
N
I
--
P
Y
K
I
-----------------
S
-----------------
P
S
T
D
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
91.12
31%
-98
* C3 *
1SIY
-
NLTP1_VIGRR
A:
[3-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
Q
G
------
N
L
-----
A
Q
C
-
I
G
F
L
Q
K
G
G
--------------
V
V
P
P
S
C
C
T
G
V
--
K
N
I
L
N
S
------
S
R
-
T
---
T
---
A
D
R
R
A
V
C
S
---
C
L
K
A
A
A
G
A
-
V
R
--
G
---
I
N
P
N
N
A
E
----
A
-
L
P
G
K
C
G
V
----
N
I
--
P
Y
K
I
-----------------
S
-----------------
T
S
T
N
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
90.94
22%
-94
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
S
---
C
G
Q
V
A
S
------
A
I
-----
A
P
C
-
I
S
Y
A
R
G
Q
G
--------
S
-----
G
P
S
A
G
C
C
S
G
V
--
R
S
L
N
N
A
------
A
R
-
T
---
T
---
A
D
R
R
A
A
C
N
---
C
L
K
N
A
A
A
G
-
V
S
G
-
L
---
N
A
-
G
N
A
A
----
S
-
I
P
S
K
C
G
V
----
S
I
--
P
Y
T
I
-----------------
S
-----------------
T
S
T
D
C
S
R
V
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
89.59
27%
-98
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
------
L
V
-----
R
P
C
-
L
S
Y
V
Q
G
G
P
--------------
G
P
S
G
Q
C
C
D
G
V
--
K
N
L
H
N
Q
------
A
R
-
S
------
Q
S
D
R
Q
S
A
C
N
---
C
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K
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I
A
R
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I
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N
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-
N
----
E
-
D
N
A
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----
S
-
I
P
P
K
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------
V
NL
P
Y
T
I
-----------------
S
-----------------
L
N
I
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C
S
R
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
83.21
27%
-91
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[3-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
H
V
D
S
------
L
V
-----
R
P
C
-
L
S
Y
V
Q
G
G
---------
P
-----
G
P
S
G
Q
C
C
D
G
V
--
K
N
L
H
N
Q
------
A
R
-
S
---
Q
---
S
D
R
Q
S
A
C
N
---
C
L
K
G
I
A
R
G
-
I
H
--
N
---
L
N
E
D
N
A
R
----
S
-
I
P
P
K
C
G
V
----
N
L
--
P
Y
T
I
-----------------
S
-----------------
L
N
I
D
C
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
62.68
22%
-38
- C2 -
3V97
6
RLMKL_ECOLI
A:
[1-703]
A
M
N
S
L
F
A
S
T
A
RGL
E
E
L
L
K
T
E
L
E
N
L
GAVE
C
Q
V
V
QG
G
V
H
F
K
G
D
T
R
L
V
Y
Q
S
L
M
W
SRLAS
R
I
M
L
P
L
G
E
C
K
V
YS
D
L
D
L
Y
L
G
V
Q
AINWTEMFNPG
A
T
F
A
V
H
F
S
G
L
N
DTIRN
S
Q
Y
G
A
M
K
V
K
D
A
I
V
D
A
F
T
R
K
NLP
R
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N
V
D
RDAPD
I
R
V
N
V
W
L
H
KE
T
A
S
I
A
L
D
LSGDGLHLRGYRDRAGIAPIK
E
T
L
A
A
A
I
V
M
R
SGWQPG
T
P
L
L
D
PMCGSG
T
L
L
I
E
A
A
M
L
A
T
DRAPGLHRGRWGFSGWAQHD
E
A
I
W
Q
E
V
K
A
E
A
Q
T
R
A
R
K
G
L
A
E
YS
S
H
F
Y
G
S
D
SD
A
R
V
I
Q
R
A
R
T
N
A
R
L
A
GIGEL
I
T
F
E
VKDVAQLTNPLPKGP
Y
G
T
V
L
S
N
P
P
Y
GESE
P
A
L
I
A
L
H
S
L
L
G
R
I
M
K
N
QFGG
W
N
L
S
L
F
S
A
S
P
D
L
L
S
C
L
Q
L
------
R
A
-----
D
K
Q
-
Y
K
A
K
N
G
P
L
--------
D
C
V
---
Q
K
N
Y
H
V
A
E
S
M
VA
E
D
Y
T
N
R
------
L
R
-
K
---
N
L
K
K
F
E
K
W
A
R
Q
E
GIE
C
Y
R
L
Y
D
A
D
-
L
--------------------------
P
----
E
Y
--
N
V
A
V
-----------------
D
-----------------
R
Y
A
D
W
V
V
V
Q
E
Y
A
H
K
A
R
Q
R
L
F
D
I
I
A
A
T
I
S
V
L
GIAPNK
L
V
L
K
T
REE
K
G
E
F
L
E
V
T
E
YN
A
H
L
W
V
N
LTDYLDTGLFLDH
R
I
A
R
R
M
L
G
Q
M
SKGKD
F
L
N
L
FSYTG
S
A
T
V
H
A
G
L
G
GAR
S
T
T
T
V
D
MS
R
T
Y
L
E
W
A
E
R
N
L
R
L
N
GLTGRA
H
R
L
I
Q
A
D
C
L
A
W
L
R
E
ANEQFD
L
I
F
I
D
P
P
TFSAFDVQRD
H
L
A
L
M
K
D
L
K
R
L
LRAG
G
T
I
M
F
S
N
NKRGFRMD
L
D
G
L
A
K
L
G
L
K
A
Q
E
ITQKTLSQDFARNRQIH
N
C
W
L
I
T
AA
34
SP3
60.02
19%
-74
- C4 -
2HFT
-
?
?:
[107-218]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
G
Q
P
------
T
I
-----
Q
S
F
-
E
---
Q
V
G
T
--------
K
V
-------
N
V
T
V
E
D
E
--
R
T
L
V
R
R
NN
T
F
L
S
L
R
-
D
VFG
K
D
L
I
Y
T
L
Y
--------
Y
W
K
S
S
G
K
-
K
T
A
-
K
---
T
N
-
T
N
E
F
----
L
-
I
D
V
D
K
G
E
N
Y
C
F
S
V
--
Q
A
V
I
-----------------
P
-----------------
S
R
T
V
-
N
R
K
S
T
-
D
S
P
V
E
C
M
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
59.99
19%
-96
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
Q
D
------
E
L
-----
N
E
C
-
K
P
A
V
-
S
K
E
--------
N
P
T
---
S
P
S
Q
P
C
C
T
A
L
--
Q
---------------------
H
A
D
F
A
C
L
C
G
---
Y
K
N
S
P
W
L
G
-
S
F
G
-
V
---
D
P
-
E
L
A
S
----
A
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L
P
K
Q
C
G
L
----
A
N
--
A
----------------------------------------
P
T
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
57.45
18%
-54
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
--
A
G
------
Q
L
-----
T
V
C
-
T
G
A
I
A
G
G
A
--------------
R
P
T
A
A
C
C
S
S
L
--
R
A
Q
Q
G
C
------
F
C
-
Q
---
F
A
K
----------------
D
P
R
Y
-
G
R
Y
-
V
---
N
S
-
P
N
A
R
----
K
-
A
V
S
S
C
G
I
----
A
L
--
P
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
53.78
12%
-60
- C2 -
3D6W
2
?
A:
[1-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
V
V
T
L
K
T
T
D
G
W
I
P
V
P
F
-----
S
K
V
M
Y
L
E
A
K
D
K
K
--------
T
Y
V
N
A
E
E
L
T
G
T
H
K
Y
S
L
--
Q
E
F
E
Y
L
------
L
P
-
K
---
D
S
F
I
R
C
H
R
S
F
I
V
---
N
V
N
H
I
K
A
I
-
Y
P
D
-
T
---
H
S
-
T
F
L
L
----
S
M
D
N
---
G
E
----
R
V
--
P
V
S
Q
-----------------
S
-----------------
Y
A
S
Y
F
R
K
L
L
G
-
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
48.68
12%
-87
- C6 -
1JMX
-
?
A:
[282-363]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
R
L
L
A
V
Q
P
------
A
F
IKAG
G
E
S
E
-
I
T
L
V
G
S
G
-----------
L
---
A
G
K
P
D
L
G
A
G
V
--
E
V
T
E
-
V
------
L
E
-
Q
---
T
P
---
T
L
V
R
L
K
A
---
R
A
A
A
D
A
K
P
-
G
Q
R
-
E
---
V
A
V
G
T
L
K
----
G
-
V
N
L
A
V
Y
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
46.99
9%
-73
* C6 *
1JJU
-
?
A:
[274-351]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
P
Q
V
L
A
V
A
P
------
A
------------
R
L
K
I
G
E
E
T
Q
L
R
V
A
G
T
G
L
---
G
S
D
L
T
L
P
E
G
V
--
A
G
---
S
------
V
E
-
S
---
A
G
N
G
V
T
V
L
K
L
-------
T
A
T
G
T
P
-
G
P
V
-
S
---
L
E
-
L
G
G
Q
----
K
-
V
D
L
V
A
Y
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
46.61
10%
-93
* C2 *
1HCR
-
A:
[1-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRPRAI
N
K
H
E
Q
E
Q
I
S
R
------
L
L
-----
E
--------
K
G
H
--------
P
------
R
Q
Q
L
-
A
I
I
F
--
G
I
-----------------
G
V
S
T
L
Y
R
Y
--------
F
P
A
S
S
I
K
-
K
R
M
-
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
45.93
11%
-33
- C1 -
1EHX
-
?
A:
[1-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDPTINPT
S
I
S
A
K
AGS
F
A
D
T
K
I
T
L
T
P
NG
N
---
T
F
-----
N
G
---
I
S
E
L
Q
S
S
--------
Q
Y
T
---
K
G
T
N
E
V
T
L
L
A
--
S
Y
L
N
T
L
------
P
E
-
N
---
T
T
K
T
L
T
----------
F
D
F
G
V
G
T
-
K
----------
N
P
K
L
----
T
-
I
T
V
---------
L
--
P
K
D
I
-----------------
P
-----------------
G
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.17
20%
-58
- C3 -
2W5Q
1
LTAS_STAAW
A:
[191-237]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
H
L
I
T
L
T
N
----
H
Y
--
P
F
T
L
-----------------
D
EKDAT
I
E
K
S
NTGD
A
T
V
D
G
Y
I
Q
T
A
R
Y
L
D
-
E
A
L
E
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.40
19%
-9
- C3 -
3LXQ
-
?
A:
[246-284]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
S
S
N
----
H
S
--
P
Y
E
Y
P
E
GKIEQYDSEH-----
M
-----------------
T
R
N
N
A
V
K
Y
S
D
-
Y
A
L
G
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
38.53
21%
-32
- C3 -
2W8D
-
LTAS2_BACSU
A:
[192-237]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
I
T
L
S
N
----
H
F
--
P
F
G
M
DEGDTD
F
P
A
G
D
FGD
S
V
V
D
-----------------
N
Y
F
Q
S
A
H
Y
L
D
-
Q
S
I
E
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
37.69
14%
-35
* C4 *
1IM3
-
US02_HCMVA
D:
[1-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
F
--
Q
I
E
D
N
R
------
C
Y
I
D
---
N
G
K
L
F
A
R
G
S
I
V
G
---
N
M
S
R
F
V
F
D
-
P
K
A
-
D
YGG
V
G
-
E
N
L
Y
V
H
AD
D
-
V
E
F
V
P
G
E
----
S
L
--
K
W
N
V
-----------------------------------
R
N
L
D
V
M
P
I
F
E
-
T
L
A
L
R
L
V
L
QG
D
V
I
W
L
R
C
V
P
E
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90........100......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
SSDVCTVVSPVLESCYIALQSGESFMKSESVCCKSLEILENRIRDSDHQFTRYAVCECFKASDNDKQVLVNENLLEVQVLCGPHVPYPITSYSDCLQYADEEIARTAL
35
81.16
100%
-75
- C- -
M035
-
A:
[5-98]
S
S
D
V
C
T
V
V
S
P
V
L
E
S
C
Y
I
A
L
Q
S
G
E
S
F
M
K
S
E
S
V
C
C
K
S
L
E
I
L
E
N
R
I
R
D
S
D
H
Q
F
T
R
Y
A
V
C
E
C
F
K
A
S
D
N
D
K
Q
V
L
V
N
E
N
L
L
E
V
Q
V
L
C
G
P
H
V
P
Y
P
I
T
S
Y
S
D
C
L
------------
39
73.61
100%
-53
- C- -
M039
-
A:
[4-103]
S
S
D
V
C
T
V
V
S
P
V
L
E
S
C
Y
I
A
L
Q
S
G
E
S
F
M
K
S
E
S
V
C
C
K
S
L
E
I
L
E
N
R
I
R
D
S
D
H
Q
F
T
R
Y
A
V
C
E
C
F
K
A
S
D
N
D
K
Q
V
L
V
N
E
N
L
L
E
V
Q
V
L
C
G
P
H
V
P
Y
P
I
T
S
Y
S
D
C
L
Q
Y
A
---------