@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-13 )
AISCSDVIKDLRPCVNYLTSGTGKPPSACCAGASALQSAASSTADKKAACECIKSASKSLNPNPQLAQALPANCGISLPYTISPSVDCSKIS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------.........10--........---------------------.------------20---.----.--.------------.---------------.------------....30........40...---.....50...-..------...-60---.---------.--------.----------.-----------.---....70-.........--80........90.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------AISCSDVIKD---LRPCVNYL---------------------T------------S----G----T--G------------K---------------P------------PSACCAGASALQSAASSTA---DKKAACECIK-SA------SKS-L----N---------P--------N----------P-----------Q---LAQAL--PANCGISLP--YTISPSVDCSKIS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
95.54
46%
-114
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
N
---
L
A
P
C
L
A
Y
L
---------------------
R
------------
N
----
T
-------
G
----------------------------
P
------------
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
R
T
T
E
---
D
R
Q
I
A
C
T
C
L
K
-
S
A
------
A
G
A
-
I
S---
G
---------
I
--------
N
----------
L
-----------
G
---
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--
Y
K
I
S
P
S
T
D
C
S
K
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
92.50
39%
-106
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
L
---
V
R
P
C
L
S
Y
V
---------------------
Q
------------
G
----
G
-------
P
------------
G
---------------
P
------------
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
---
D
R
Q
S
A
C
N
C
L
K
-
G
I
------
A
R
G
-
I
H---
N
---------
L
--------
N
----------
E
-----------
D
---
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--
Y
T
I
S
L
N
I
D
C
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
87.75
42%
-102
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
---------------------
R
------------
G
----
Q
----
G
--
S
------------
G
---------------
P
------------
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
---
D
R
R
A
A
C
N
C
L
K
-
N
A
------
A
A
G
-
V
S---
G
---------
L
--------
N
----------
A
-----------
G
---
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
87.71
43%
-109
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
S
---
L
A
P
C
I
P
Y
V
---------------------
R
------------
G
----
G
-------
G
------------
A
---------------
V
------------
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
R
T
T
P
---
D
R
Q
A
A
C
N
C
L
K
-
Q
L
------
S
A
S
-
V
P---
G
---------
V
--------
N
----------
P
-----------
N
---
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--
Y
K
I
S
A
S
T
N
C
A
T
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
85.76
38%
-105
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
N
---
L
A
Q
C
I
G
F
L
---------------------
Q
------------
K
----
G
-------
G
------------
V
---------------
V
------------
P
P
S
C
C
T
G
V
K
N
I
L
N
S
S
R
T
T
A
---
D
R
R
A
V
C
S
C
L
K
-
A
A
------
A
G
A
-
V
R---
G
---------
I
--------
N
----------
P
-----------
N
---
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--
Y
K
I
S
T
S
T
N
C
N
S
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
83.97
42%
-92
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
---------------------
R
------------
G
----
Q
----
G
--
S
------------
G
---------------
P
------------
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
---
D
R
R
A
A
C
N
C
L
K
-
N
A
------
A
A
G
-
V
S---
G
---------
L
--------
N
----------
A
-----------
G
---
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
61.49
24%
-97
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
Y
L
---------------------
M
KNLGERSQVSPR
M
----
R
----
E
--
E
------------
D
---------------
H
------------
K
Q
L
C
C
M
Q
L
K
N
L
-----------
D
E
K
C
M
C
P
A
I
M
-
M
M
L
N
EPMW
I
R
M
-
R
----
D
---------
Q
--------
V
----------
M
-----------
S
---
M
A
H
N
L
--
P
I
E
C
N
L
M
---------
S
Q
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
59.90
25%
-90
- C2 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
---------------------
R
------------
Q
----
Q
LAG-
S
--
P
F
S
E
NQWGPQQGP
S
---------------
L
------------
R
E
Q
C
C
N
E
L
Y
Q
E
-----------
D
Q
V
C
V
C
P
T
L
K
-
Q
A
------
A
K
S
-
V
RVQ-
G
---------
Q
HGPFQST
R
I
----------
Y
-----------
Q
---
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
58.46
16%
-91
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-121]
--------------------------------------------------------------------------------------------------------------------------------------------
V
N
---
L
K
P
C
E
Q
H
I
---------------------
M
------------
Q
----
R
I
MG-
E
QE
Q
------------
Y
---------------
D
SYDIRSTR
S
S
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
----
N
-----
T
Q
G
C
M
C
E
A
L
Q
-
Q
I
------
M
E
N
-
Q
C---
D
RLQ------
D
R-------
Q
MV
Q
Q
F
-----
K
-----------
R
---
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
QR
C
D
L
D
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
56.74
20%
-115
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-105]
--------------------------------------------------------------------------------------------------------------------------------------------
P
A
---
L
P
A
C
R
P
L
L
---------------------
R
------------
L
Q
C
N
-
G
----
S
--
Q
------------
V
---------------
P
E
A
V
---------
L
R
D
C
C
Q
Q
L
A
H
I
-----------
S
E
W
C
R
C
G
A
L
Y
-
S
M
------
L
D
S
-
M
Y
K
E
H-----------G-------
A
FPRCR
R
E
V
V
-
K
-----------
L
---
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
55.90
25%
-74
- C2 -
2LVF
-
?
A:
[16-101]
--------------------------------------------------------------------------------------------------------------------------------------------
Q
M
---
L
S
H
C
R
M
Y
M
---------------------
R
------------
Q
Q
M
E
-
E
----
S
--
T
------------
Y
---------------
Q
TMPRRGMEP
H
--
M
S
E
C
C
E
Q
L
E
G
M
-----------
D
E
S
C
R
C
E
G
L
R
-
M
M
------
M
R
M
M
Q
Q
K
E-
M
Q
--------
P
R
G
E
Q
M
R
R
-
M
----------
M
-----------
R
---
L
A
E
N
I
--
P
S
R
C
N
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
54.98
17%
-103
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
--------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
---------------------
T
S
R
TC--------
G
----
I
----
G
--
P
------------
R
---------------
L
P
W
P
E
L
-------
K
R
R
C
C
R
E
L
A
D
I
-----------
P
A
Y
C
R
C
T
A
L
S
-
I
L
------
M
D
G
-
A
I
P
P
G
P
---------
D
AQL
E
G
R
L
-
E
D
LPGCP
R
E
V
Q
R
-----------
G
---
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
54.42
19%
-75
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
Q
R
KD-
L
S
S
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
GEEVLRMPGDEN
Q
------------
Q
----
Q
----
E
--
S
------------
Q
---------------
Q
------------
L
Q
Q
C
C
N
Q
V
K
Q
V
-----------
R
D
E
C
Q
C
E
A
I
K
-
Y
I
------
A
E
D
-
Q
----
I
---------
Q
--------
Q
----------
G
QLHGEE
S
E
R
V
A
Q
---
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--
R
Q
T
R
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
52.53
25%
-83
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
--------------------------------------------------------------------------------------------------------------------------------------------
E
M
---
L
N
H
C
G
M
Y
L
---------------------
M
------------
K
----
N
LGER
S
--
Q
VSPR
M
R
E
E
----
D
---------------
H
------------
K
Q
L
C
C
M
Q
L
K
N
L
-----------
D
E
K
C
M
C
P
A
I
M
-
M
M
------
L
N
E
-
P
----
M
WI-------
R
MR
D
Q
----
V
----------
M
-----------
S
---
M
A
H
N
L
--
P
I
E
C
N
L
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
51.13
25%
-61
- C2 -
1PSY
-
2SS_RICCO
A:
[25-120]
--------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
---------------------
R
------------
Q
----
S
S
S
R
-
R
--
S
T
GE---------
E
VLRMPGDENQQQESQ
Q
------------
L
Q
Q
C
C
N
Q
V
K
Q
V
-----------
R
D
E
C
Q
C
E
A
I
K
-
Y
I
------
A
E
D
-
Q
I
Q
Q
-
G
Q--------
L
HGEE
S
E
R
-
V
----------
A
-----------
Q
---
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--
C
M
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
49.83
17%
-78
- C2 -
3V5R
-
GAL3_YEAST
A:
[4-505]
F
E
Q
K
H
L
A
V
V
D
A
F
F
Q
T
YHVKPD
F
I
A
R
S
P
G
R
V
N
LIGEHIDYCD
F
S
V
L
P
L
A
I
D
V
D
M
L
C
A
V
K
I
L
D
E
K
N
P
S
I
T
L
T
N
ADPKF
A
Q
R
K
F
D
L
PLDGSYMAIDPSVSEWS
N
Y
F
K
C
G
L
H
V
A
H
S
Y
L
K
K
I
APERFNNTP
L
V
G
A
Q
I
F
C
Q
S
D
---------------
I
---------------------
P
------------
T
----
G
----
G
--
G
------------
L
---------------
S
------------
S
A
F
T
C
A
A
A
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A
T
I
R
A
N
M
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K
N
F
D
I
S
K
K
D
L
T
R
I
T
A
-
V
A
------
E
H
Y
-
V
----
G
---------
V
--------
N
----------
N
-----------
G
G
M
D
Q
A
T
S
V
--
Y
G
E
E
D
H
A
L
Y
--
V
E
F
R
P
K
L
K
A
T
P
F
K
F
P
QLKN
H
E
I
S
F
V
I
A
N
TLVKSNKAPTN
Y
N
L
R
V
I
E
V
T
V
A
A
N
A
L
A
T
R
Y
S
V
A
L
P
S
HKDNSNSERGN
L
R
D
F
M
D
A
Y
Y
A
R
YENQAQPWNGD
I
G
T
G
I
E
R
L
L
K
M
L
Q
L
V
E
E
S
FSRKKS
G
F
T
V
H
E
A
S
T
A
L
NCS
R
E
E
F
T
R
D
YLTT
F
P
V
R
F
QVLK
L
Y
Q
R
A
K
H
V
Y
S
E
S
L
R
V
L
K
A
L
K
M
M
TSATFHT
D
E
D
F
F
T
D
F
G
R
L
M
N
E
S
Q
A
S
C
D
KLYECSC
I
E
T
N
Q
I
C
S
I
A
L
A
N
GSF
G
S
R
L
T
G
AGWG
G
C
T
I
H
L
V
P
S
G
ANGN
V
E
Q
V
R
K
A
L
I
E
KFYNVRYPDLT
D
E
E
L
K
D
A
I
I
V
S
K
PAL
G
T
C
L
Y
E
Q
28
HHSearch
46.90
14%
-84
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
---------------------
S
------------
T
R
T
CG
V
----
G
--
P
------------
R
---------------
L
A
T
Q
E
M
-------
K
A
R
C
C
R
Q
L
E
A
I
-----------
P
A
Y
C
R
C
E
A
V
R
-
I
L
------
M
D
G
-
V
V
T
PS
G
Q
H
E
G
RLLQD
L
P-------
G
CP
R
Q
V
Q
R
A
--
F
-----------
A
---
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
46.45
25%
-72
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
E
---
L
N
E
C
K
P
A
V
---------------------
S
K-----------
E
----
N
----
P
--
T
------------
S
---------------
P
------------
S
Q
P
C
C
T
A
L
Q
--------
H
A
---
D
F
A
C
L
C
G
Y
K
N
S
P
W
------
L
G
S
-
F
----
G
---------
V
--------
D
----------
P
-----------
E
---
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------
P
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
45.24
27%
-52
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
A
--
G
Q
---
L
T
V
C
T
G
A
I
---------------------
A
------------
G
----
G
----
A
---------------
R
---------------
P
------------
T
A
A
C
C
S
S
L
R
A
------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
------
R
Y
G
-
R
----
Y
---------
V
--------
N
----------
S
-----------
P
---
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
--
T
-------
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
43.17
20%
-53
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
Q
---
L
T
V
C
T
G
A
I
---------------------
A
------------
G
----
G
----
A
--
R
----------------------------
P
------------
T
A
A
C
C
S
S
L
R
A
------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
------
R
Y
G
-
R
----
Y
---------
V
--------
N
----------
S
-----------
P
---
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AISCSDVIKDLRPCVNYLTSGTGKPPSACCAGASALQSAASSTADKKAACECIKSASKSLNPNPQLAQALPANCGISLPYTISPSVDCSKIS
41
99.67
100%
-126
- C- -
M041
-
A:
[1-93]
A
I
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
T
S
G
T
G
K
P
P
S
A
C
C
A
G
A
S
A
L
Q
S
A
A
S
S
T
A
D
K
K
A
A
C
E
C
I
K
S
A
S
K
S
L
N
P
N
P
Q
L
A
Q
A
L
P
A
N
C
G
I
S
L
P
Y
T
I
S
P
S
V
D
C
S
K
I
S
47
95.02
100%
-122
- C- -
M047
-
A:
[1-121]
A
I
S
C
S
D
V
I
K
D
L
R
P
C
V
N
Y
L
T
S
G
T
G
K
P
P
S
A
C
C
A
G
A
S
A
L
Q
S
A
A
S
S
T
A
D
K
K
A
A
C
E
C
I
K
S
A
S
K
S
L
N
P
N
P
Q
L
A
Q
A
L
P
A
N
C
G
I
S
L
P
Y
T
I
S
P
S
V
D
C
S
K
I
S