@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 714_tV_SELMO: (2014-05-13 )
ACDATNNMGKLLPCRQAAVKNGKDPKQLAGCCDAVKPFSGSKDAADCLCQSLLAAQKVDKTVDLHSAIAIPAKCGIPVQANLKCNGMAVPQH
Atome Classification :
(20 SA)
--------------------------.........------10-..--.......20----..-.---------------.----------.-------------------....30......--.---------.40--.-.--.----.----....---.50----.....-----..-------------.----------.60..----------......-----70.....----.----------.------.----80......--..-.90.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------ACDATNNMG------K--L
L
--
P
C
R
Q
A
A
VK-----NG-K---------------
D
----------
P
-------------------
K
Q
L
A
G
C
C
D
AVKP--F---------SG---S-
K
--
D
----
A
----
A
D
C
L
---
C
Q
-----
S
L
L
A
A
-----
Q
K
-------------
V
----------
D
K
T
VD----------LHSAIA-----IPAKCGI----
P
----------
V
------
Q
----
A
-
N
L
K
CNG--MA-VPQH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
77.28
20%
-140
- C6 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------
M
C
Y
P
G
Q
A
F
Q
------
V
PA
L
P
--
A
C
R
P
L
L
R
L
Q
C
N
GS
Q
V
-
P
--------------------------
E
-------------------
A
V
L
R
D
C
C
Q
Q
L
A
H
--
I
---------
S
-------------------
E
W
C
R
---
C
G
-----
A
L
Y
S
M
-----
L
D
S
M
Y
K
E
HGAFPRCR
R
----------
E
V
V
K
L
----------
T
A
A
S
I
T
-----
A
--
V
C
R
L
----
P
----------
I
V
VDASG
D
----
G
-
A
Y
V
C
K
D
--
V
A
A
Y
P
D
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
76.09
29%
-94
- C6 -
1T12
-
NLTP1_TOBAC
A:
[8-89]
---------------------------------
T
S
------
N
--
L
A
--
P
C
L
A
Y
L
R
N
-----
T
G
----------------------------
P
---------------------
L
G
R
C
C
G
G
V
K
A
--
L
---------
V
N
---
S
A
R
--
T
----
T
E
D
R
Q
I
A
C
T
---
C
------
L
K
S
A
A
-----
G
A
-------------
I
-----------
S
G
I
N
----------
L
G
K
A
A
G
-----
L
P
S
T
C
G
V
----
N
----------
I
------
P
YKIS
P
-
S
T
D
C
S
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
74.18
31%
-95
- C6 -
1AFH
-
NLTP_MAIZE
A:
[8-91]
---------------------------------
A
S
------
A
--
I
A
--
P
C
I
S
Y
A
R
G
-----
Q
G
-
S
---------------
G
----------
P
---------------------
S
A
G
C
C
S
G
V
R
S
--
L
---------
N
N
A
--
A
-
R
--
T
T
A
D
R
R
----
A
A
C
N
---
C
------
L
K
N
A
A
-----
A
G
-------------
V
-----------
S
G
L
N
----------
A
G
N
A
A
S
-----
I
P
S
K
C
G
V
----
S
----------
I
------
P
Y
T
I
S
T
-
S
T
D
C
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
70.95
27%
-78
- C6 -
1BWO
2
NLTP1_WHEAT
A:
[7-88]
---------------------------------
D
S
------
L
--
V
R
--
P
C
L
S
Y
V
Q
G
------
G
-
P
---------------
G
----------
P
---------------------
S
G
Q
C
C
D
G
V
K
N
--
L
---------
H
N
Q
--
A
-
R
--
S
Q
S
D
R
Q
----
S
A
C
N
---
C
L
-----
K
G
I
A
R
------
G
-------------
I
-----------
H
N
L
N
----------
E
D
N
A
R
S
-----
I
P
P
K
C
G
V
----
N
----------
L
------
P
Y
T
I
S
L
-
N
I
D
C
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
69.10
17%
-92
- C6 -
1HYP
-
?
?:
[6-80]
-------------------------------
P
S
C
P
------
D
--
L
S
--
I
C
L
N
--
I
L
-----
G
G
-
S
---------------
L
----------
G
--------------------
T
V
D
D
C
C
A
L
I
G
G
--
L
---------
G
D
---
I
----
E
----
A
----
I
V
C
L
---
C
I
-----
Q
L
R
A
L
-----
G
I
-------------
L
----------
N
L
N
R
N
----------
L
Q
L
I
L
--------
N
S
C
G
R
----
S
----------
Y
------
P
----
S
-
N
A
T
C
P
R
--
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
68.49
27%
-73
- C6 -
2ALG
2
NLTP1_PRUPE
A:
[8-90]
---------------------------------
S
S
------
S
--
L
A
--
P
C
I
P
Y
V
R
G
------
G
-
G
---------------
A
----------
V
-------------------
P
--
P
A
C
C
N
G
I
R
N
--
V
---------
N
N
L
A
R
T
-
T
P
D
R
----
Q
----
A
A
C
N
---
C
L
-----
K
Q
L
-
S
-----
A
S
-------------
V
-----------
P
G
V
N
----------
P
N
N
A
A
A
-----
L
P
G
K
C
G
V
----
S
----------
I
------
P
YKIS
A
-
S
T
N
C
A
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
68.36
22%
-67
- C6 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------
A
I
S
C
G
Q
V
A
S
------
A
--
I
A
--
P
C
I
S
Y
A
R
G
-----
Q
G
-
S
---------------
G
----------
P
---------------------
S
A
G
C
C
S
G
V
R
S
--
L
---------
N
N
A
AR
T
-
T
--
A
----
D
----
R
R
A
A
---
C
N
-----
C
L
K
N
A
-----
A
A
-------------
G
----------
V
S
G
L
N
----------
A
G
N
A
A
S
-----
I
P
S
K
C
G
V
SIPY
T
----------
I
------
S
----
T
-
S
T
D
C
S
R
--
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
65.38
29%
-73
- C6 -
1SIY
-
NLTP1_VIGRR
A:
[6-89]
--------------------------------
V
Q
G
------
N
--
L
A
--
Q
C
I
G
F
L
Q
------
K
G
-
G
---------------
V
----------
V
---------------------
P
P
S
C
C
T
G
V
K
N
--
I
---------
L
N
---
S
S
R
--
T
TADR
R
----
A
V
C
S
---
C
L
-----
K
A
A
A
G
------
A
-------------
V
-----------
R
G
I
N
----------
P
N
N
A
E
A
-----
L
P
G
K
C
G
V
----
N
----------
I
------
P
YKIS
T
-
S
T
N
C
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
64.09
29%
-77
- C6 -
2RKN
2
DIRL1_ARATH
A:
[8-74]
--------------------------------
S
Q
D
------
E
--
L
N
--
E
C
K
P
A
V
S
K
-----
E
N
P
T
---------------
S
----------
P
---------------------
S
Q
P
C
C
T
A
L
Q
H
--
A
-------------------
D
---------
F
A
C
L
---
C
G
-----
Y
K
N
S
P
-----
W
L
-------------
G
----------
S
F
G
V
D
----------
P
E
L
A
S
A
-----
L
P
K
Q
C
G
L
----
A
----------
N
------
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
62.68
26%
-150
- C6 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
-----------------------------------------------------------------------------------------------------------------
V
D
D
C
C
A
L
I
G
G
--
L
---------
G
D
-----
I
--
E
----
A
----
I
V
C
L
---
C
I
-----
Q
L
R
A
---------------------
L
----------
G
I
-
L
N
----------
L
N
R
N
L
Q
L
----
I
L
N
S
C
G
R
----
S
----------
Y
------
P
----
S
-
N
A
T
C
P
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
61.42
18%
-36
- C3 -
1QUS
2
MLTB_ECOLI
A:
[1-322]
---------------MVEPQHNVM
Q
M
G
G
D
F
A
N
N
P
N
------
A
--
Q
Q
--
F
I
D
K
M
V
N
K
-----
H
G
-
F
---------------
D
----------
R
-------------------
Q
Q
L
Q
E
I
L
S
Q
A
K
R
--
L
D
S
V
L
R
L
M
D
N
Q
G
---
P
-
N
--
G
----
A
----
W
L
R
Y
---
R
K
-----
K
F
I
T
P
-----
D
N
-------------
V
----------
Q
N
G
V
V
----------
F
W
N
Q
Y
E
D
A
L
N
R
A
W
Q
V
Y
G
V
----
P
P
E
I
I
V
G
I
I
G
-
V
------
E
----
T
-
R
W
---
G
--
R
V
-
M
G
K
T
R
I
L
D
A
L
A
T
L
S
F
NYPRR
A
E
Y
F
S
G
E
L
E
T
F
L
L
M
A
R
D
E
QDDPLN
L
K
G
S
FAGAMGYGQFM
P
S
S
Y
K
Q
YAVDFSGDGHINLWD
P
V
D
A
I
G
S
V
A
N
Y
F
K
A
H
G
W
V
K
GDQV
A
V
M
A
N
G
QAPG
L
P
N
G
FK
T
K
Y
S
I
S
Q
L
A
A
A
G
L
T
P
QQPLGNHQ
Q
A
S
L
L
R
L
D
VGT
G
Y
Q
Y
W
YGL
P
N
F
Y
T
I
T
R
Y
NHS
T
H
Y
A
M
A
V
W
Q
L
G
Q
A
V
A
L
A
R
V
Q
18
Fugue
60.75
17%
-63
- C6 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
------------GPMRRERGRQGDSS
S
C
E
R
Q
V
D
R
V
------
N
--
L
K
--
P
C
E
Q
H
I
M
Q
-----
R
I
-
M
GEQEQYDSYDIRSTR
S
----------
S
-------------------
D
Q
Q
Q
R
C
C
D
E
L
N
E
--
M
---------
E
N
---
T
--------------
Q
G
C
M
---
C
E
-----
A
L
Q
Q
I
-----
M
E
N
Q
CDRLQDR----
Q
----------
M
V
Q
Q
F
----------
K
R
E
L
M
S
-----
L
P
Q
Q
C
N
F
----
R
----------
A
------
P
----
Q
---
R
C
D
L
--
D
V
-
S
G
G
R
CS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
60.69
20%
-47
- C6 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------A
E
F
M
E
S
K
G
E
R
E
G
S
S
SQ
Q
C
R
Q
E
V
Q
R
K
------
D
--
L
S
--
S
C
E
R
Y
L
R
Q
-----
S
S
-
S
---------------
R
----------
R
S
T
GEEVLRMPGDENQQQES
Q
Q
L
Q
Q
C
C
N
Q
V
K
Q
--
V
---------
R
D
---
E
----------------
C
Q
---
C
E
-----
A
I
K
Y
I
-----
A
E
-------------
D
----------
Q
I
Q
Q
G
QLHGEE
S
E
R
V
A
Q
R
A
G
E
-----
I
V
S
S
C
G
V
----
R
----------
C
------
M
----
R
-
Q
T
R
T
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
60.46
23%
-43
* C6 *
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------A
I
D
L
C
G
M
S
Q
D
------
E
--
L
N
--
E
C
K
P
A
V
S
K
-----
E
N
-
P
---------------
T
----------
S
-------------------
P
S
-
Q
P
C
C
T
A
L
Q
H
--
A
---------
D
-------------------
F
A
C
L
---
C
G
-----
Y
K
N
S
P
-----
W
L
-------------
G
----------
S
F
G
V
D
----------
P
E
L
A
S
A
-----
L
P
K
Q
C
G
L
----
A
----------
N
------
A
----
P
-
T
--
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
59.16
17%
-94
- C6 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
------
E
--
M
L
N
-
H
C
G
M
Y
L
M
K
-----
N
L
-
G
---------------
E
RSQVSPR
M
R
E
E
-------------------
D
H
K
Q
L
C
C
M
Q
L
K
N
--
L
---------
D
-------------------
E
K
C
M
---
C
P
-----
A
I
M
M
M
L
N
EPM
W
I
-------------
R
----------
M
R
D
Q
V
----------
M
S
M
A
H
N
-----
L
P
I
E
C
N
L
---------------------------
M
-
S
Q
P
C
Q
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
57.65
23%
-48
- C5 -
1GD0
2
MIF_HUMAN
A:
[1-118]
-----------------P
M
F
I
V
N
T
NV
P
R
A
S
V
P
D
--------
G
--
F
L
S
E
L
T
Q
Q
L
A
Q
A
-----
T
G
-
K
---------------
P
----------
P
-------------------
Q
Y
I
A
V
H
V
V
P
D
Q
L
MA
F
---------
G
G
---
S
-
S
--
E
----
P
----
C
-
A
L
---
C
S
L
H
S
IG
K
I
G
G
A
-----
Q
N
-------------
R
----------
S
Y
S
K
L
----------
L
C
G
L
L
A
-------
E
R
L
R
I
----
S
PDR
V
Y
I
N
Y
Y
D
M
------
N
----
A
A
N
V
G
W
N
N
ST
F
A
-
L
E
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
56.34
26%
-50
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------
A
G
C
N
A
G
------
Q
--
L
T
--
V
C
T
G
A
I
A
G
-----
G
A
-
R
---------------
P
----------
T
----------------------
A
A
C
C
S
S
L
R
-----------------------
A
----
Q
----
Q
G
C
F
---
C
Q
------
F
A
K
D
-----
P
R
-------------
Y
----------
G
R
Y
V
N
----------
S
P
N
A
R
K
-----
A
V
S
S
C
G
I
----
A
------------------------
L
P
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
55.70
27%
-133
- C6 -
2DS2
-
?
B:
[5-64]
---------------------------------------------------------------------------------------------------------------
P
A
L
R
Q
C
C
N
Q
L
R
Q
--
V
---------
D
R
---
P
----------------
C
V
---
C
P
-----
V
L
R
Q
A
-----
A
Q
Q
------------
V
L
Q
R
Q
IIQG
P
Q
Q
L
R
R
L
----------
F
D
A
A
R
N
-----
L
P
N
I
C
N
I
----
P
----------
N
------
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
54.21
19%
-65
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------
A
G
C
N
A
G
------
Q
--
L
T
--
V
C
T
G
A
I
A
G
-----
G
A
-
R
---------------
P
----------
T
----------------------
A
A
C
C
S
S
L
---------------------
R
--
A
----
Q
----
Q
G
C
F
---
C
Q
------
F
A
K
D
-----
P
R
-------------
Y
----------
G
R
Y
V
N
----------
S
P
N
A
R
K
-----
A
V
S
S
C
G
I
----
A
----------
L
--------------
P
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
49.54
14%
-28
- C4 -
1RKU
5
?
A:
[1-206]
D
M
E
I
A
C
L
D
L
E
GVLVPEI
W
I
A
F
A
E
K
T
G
I
D
A
L
K
A
T
T
R
DIPD
Y
D
V
--
L
M
--
K
Q
R
L
R
I
L
D
E
----
H
G
-
L
---------------
K
----------
L
-------------------
G
D
I
Q
E
V
I
A
T
L
K
P
--
L
---------
E
G
---
A
-
V
--
E
----
F
----
V
D
W
L
R
E
R
F
Q
-----
V
V
I
L
S
-----
D
T
-------------
F
----------
Y
E
F
S
-----------
Q
P
L
M
---------
R
Q
L
G
F
----
P
------------------------
T
L
L
C
H
K
--
L
E
-
I
D
D
S
DRVV
G
Y
Q
L
RQKD
P
K
R
Q
S
V
I
A
F
K
S
L
Y
Y
R
V
I
A
A
G
D
S
YND
T
T
M
L
S
E
AH
A
G
I
L
F
HAP
E
N
V
I
R
E
F
PQ
F
P
A
V
H
T
Y
E
D
L
K
R
E
F
L
K
A
SSRSLSL-------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ACDATNNMGKL
L
P
C
R
Q
A
A
VKNGK
D
P
K
Q
L
A
G
C
C
D
AVKPFSGS
K
D
A
A
D
C
L
C
Q
S
L
L
A
A
Q
K
V
D
K
T
VDLHSAIAIPAKCGI
P
V
Q
A
N
L
K
CNGMAVPQH
36
48.27
100%
-
- C- -
M036
-
A:
[1-138]
A
C
D
A
T
N
N
M
G
K
L
L
P
C
R
Q
A
A
V
K
N
G
K
D
P
K
Q
L
A
G
C
C
D
A
V
K
P
F
S
G
S
K
D
A
A
D
C
L
C
Q
S
L
L
A
A
Q
K
V
D
K
T
V
D
L
H
S
A
I
A
I
P
A
K
C
G
I
P
V
Q
A
N
L
K
C
N
G
M
A
V
P
Q
H
39
38.43
100%
25
- C- -
M039
-
A:
[2-111]
A
C
D
A
T
N
N
M
G
K
L
L
P
C
R
Q
A
A
V
K
N
G
K
D
P
K
Q
L
A
G
C
C
D
A
V
K
P
F
S
G
S
K
D
A
A
D
C
L
C
Q
S
L
L
A
A
Q
K
V
D
K
T
V
D
L
H
S
A
I
A
I
P
A
K
C
G
I
P
V
Q
A
N
L
K
C
N
G
M
A
V
P
Q
H