@TOME V2.3
(Nov 2016)
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-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 738_tVI_VITVI: (2014-05-14 )
ADCKEERRVAINACKPILYGKDPTPACCERIRVTHIECVCPVITPKLAALVDVNRMVRLIEGCGRNVPRHYKCGSITTP
Atome Classification :
(20 SA)
---------------------------------------------------........--.10-.......---..--------------20----.-----.---------.----------..-------------------...-.30.-..-.----------.----------...40....-..-.-..--50-.-------------.---------.-------...-...60.......----.70...-------.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------AD
C
K
E
E
R
R
--
V
A
--
I
NACKPI---LY--------------G-----K-----D---------P----------
T
P
-------------------
A
C
C
-
E
R
I
R-
V
T
-
H
----------
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----------
E
C
VC-PVI
T
-
P
K
-
L
-
A
A
--
L
--
V
-------------
D
---------
V
-------
N
R
M
-
V
R
L
I
E
G
CGRNVP----
R
H
YKCG-------SITTP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
81.57
22%
-127
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------AI
D
L
C
G
M
S
-
Q
--
D
E
--
L
N
E
C
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P
A
---
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--------------
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ENP--
T
-----
S
---------
P
----------
S
Q
-------------------
P
C
C
-
T
A
L
Q
-
H
A
-
D
----------
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----------
A
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L
C
-
G
Y
K
N
-
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--
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V
-------------
D
---------
P
-------
E
L
A
-
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A
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P
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Q
C
G
L
A
N
A
------
P
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
79.44
28%
-100
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
----------------------------------------------------
T
C
G
Q
V
S
S
--
S
L
---
A
P
C
I
P
Y
---
V
R
--------------
G
G----
G
-----
A
---------
V
----------
P
P
-------------------
A
C
C
-
N
G
I
R
-
N
V
-
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
C
N
C
---
L
K
-
Q
L
-
S
-
A
S
VP
G
--
V
-------------
N
---------
P
-------
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
YKIS
A
S
T
N
C
A
-------
T
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
77.63
21%
-97
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
----------------------------------------------------
T
C
G
Q
V
T
S
--
N
L
---
A
P
C
L
A
Y
---
L
R
--------------
N
-----
T
-----
G
---------
P
----------
L
G
-------------------
R
C
C
-
G
G
V
K
-
A
L
-
V
----------
N
S
A
RT
T
E
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R
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I
A
C
T
C
---
L
K
-
S
A
-
A
-
G
A
IS
G
--
I
-------------
N
---------
L
-------
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
YKIS
P
S
T
D
C
S
-------
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
77.48
19%
-93
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
----------------------------------------------------
S
C
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Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
---
A
R
--------------
G
Q----
G
-----
S
G--------
P
----------
S
A
-------------------
G
C
C
-
S
G
V
R
-
S
L
-
N
----------
N
A
A
RT
T
A
D
R
R
A
A
C
N
C
---
L
K
-
N
A
-
A
-
A
G
VS
G
--
L
-------------
N
---------
A
-------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
-------
R
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
76.72
21%
-77
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
----------------------------------------------------
D
C
G
H
V
D
S
--
L
V
---
R
P
C
L
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Y
---
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--------------
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G----
P
-----
G
---------
P
----------
S
G
-------------------
Q
C
C
-
D
G
V
K
-
N
L
-
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
C
N
C
-
L
K
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I
-
A
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-
G
-
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--
N
--
L
-------------
N
---------
E
-------
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N
A
-
R
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P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
-------
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
76.05
24%
-105
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
---------------------------------------------------
D
L
C
G
M
S
Q
D
--
E
L
---
N
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---
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-----
E
NPT--
S
---------
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----------
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-------------------
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C
C
-
T
A
L
Q
-
H
A
-
D
----------
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----------
A
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L
C
-
G
Y
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W
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--
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--
V
-------------
D
---------
P
-------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
----
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
73.84
19%
-80
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------P
Y
G
R
G
R
T
E
S
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C
Y
Q
Q
M
E
--
E
A
EM
L
N
H
C
G
M
Y
---
L
M
KNLGERSQVSPR
M
R
E
-----
E
-----
D
---------
H
----------
K
Q
-------------------
L
C
C
-
M
Q
L
K
-
N
L
-
D
----------
E
----------
K
C
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C
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A
I
M
-
M
M
-
L
-
N
E
--
P
--
M
-------------
W
---------
I
-------
R
M
R
-
D
Q
V
M
S
M
A
H
N
L
P
I
----
E
---
C
N
-------
L
M
S
Q
P
CQM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
73.74
23%
-79
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
----------------------------------------------------
T
C
G
Q
V
Q
G
--
N
L
---
A
Q
C
I
G
F
---
L
Q
--------------
K
G----
G
-----
V
---------
V
----------
P
P
-------------------
S
C
C
-
T
G
V
K
-
N
I
-
L
----------
N
SSRTTADR
R
A
V
C
S
C
-
L
K
A
A
-
A
G
-
A
-
V
R
--
G
--
I
-------------
N
---------
P
-------
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
YKIS
T
S
T
N
C
N
-------
S
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
73.16
14%
-127
- C3 -
2LVF
-
?
A:
[8-101]
-----------------------------------------------------
C
R
E
Q
M
Q
R
Q
Q
M
--
L
S
H
C
R
M
Y
---
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--------------
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M
E
E
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T
-----
Y
---------
Q
TMPRRGMEP
H
M
S
-------------------
E
C
C
-
E
Q
L
E
-
G
M
-
D
----------
E
----------
S
C
R
C
-
E
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L
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-
M
M
-
M
-
R
M
--
M
--
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
---------
M
-------
R
L
A
-
E
N
I
P
S
R
C
N
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
66.72
20%
-104
- C3 -
1S6D
-
2SS8_HELAN
A:
[11-97]
-----------------------------------------------------
C
Y
Q
Q
M
E
E
A
E
M
--
L
N
H
C
G
M
Y
---
L
M
--------------
K
-----
N
LGERS
Q
VSPR
M
R
E
E
D
H
----------
K
Q
-------------------
L
C
C
-
M
Q
L
K
-
N
L
-
D
----------
E
----------
K
C
M
C
-
P
A
I
M
-
M
M
-
L
-
N
E
--
P
--
M
WIRMR
D
Q
------
V
---------
M
-------
S
M
A
-
H
N
L
P
I
E
C
N
L
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
65.69
21%
-153
- C3 -
1N89
1
NLT2G_WHEAT
A:
[7-65]
-----------------------------------------------------------------
L
A
V
C
A
S
A
---
I
L
--------------
S
G----
A
-----
K
---------
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----------
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G
-------------------
E
C
C
-
G
N
L
R
-
A
Q
-
Q
---------------------
G
C
F
C
-
Q
Y
A
K
D
P
T
-
Y
-
G
Q
--
Y
--
I
-------------
R
---------
S
-------
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
64.43
15%
-66
- C3 -
1IGN
-
RAP1_YEAST
A:
[94-242]
------------------------------------------------
K
R
K
F
S
A
D
E
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Y
T
--
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K
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GRSLIRTQSRRGPIARE
F
F
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H
F
-
A
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A
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H
----------
T
----------
E
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R
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R
K
-
F
-
L
L
--
A
--
Y
-------------
G
---------
I
-------
D
D
Y
-
I
S
Y
Y
E
A
E
E
P
M
K
N
----
L
T
P
T
P
G
-------
N
Y
N
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
62.19
22%
-126
- C3 -
2DS2
-
?
B:
[8-69]
-----------------------------------------------------------------------------------------------------------------------------
R
-------------------
Q
C
C
-
N
Q
L
R
-
Q
V
-
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----------
R
----------
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C
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R
-
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A
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A
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--
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--
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IIQG
P
Q
Q
L
R
R
L
---------
F
-------
D
A
A
-
R
N
L
P
N
I
C
N
I
P
N
I
----
G
A
--
C
P
-------
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
61.33
26%
-137
- C3 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
----------------------------------------------------------------------------------------------------------------------------
V
D
-------------------
D
C
C
-
A
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I
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R
-
A
----
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G
--
I
--
L
-------------
N
---------
L
-------
N
R
N
L
Q
L
I
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N
S
C
G
R
S
Y
P
----
S
N
A
T
C
P
-------
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
60.59
26%
-70
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------
A
G
C
N
A
G
Q
-------
L
T
V
C
T
G
A
---
I
A
G-------------
G
-----
A
-----
R
---------
P
----------
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A
-------------------
A
C
C
-
S
S
L
R
--
A
-
Q
----------
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----------
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-
Y
-
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R
--
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--
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-------------
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N
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K
A
V
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A
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-------
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H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
60.36
18%
-130
- C3 -
2RAQ
-
?
A:
[3-95]
-----------------------------------------------------
A
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--
I
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--
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A
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G
----------
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----------
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DLD
F
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-
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A
I
E
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Y
G
G
S
I
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----
S
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D
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V
A
G
RTMV
E
E
V
T
T
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
59.57
27%
-101
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[8-69]
-----------------------------------------------------------------
L
T
V
C
T
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A
---
I
A
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G----
A
-----
R
---------
P
----------
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-------------------
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C
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-
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R
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A
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------------
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----------
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-
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R
--
Y
--
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A
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-------
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C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
59.28
20%
-51
- C3 -
1DQA
6
HMDH_HUMAN
A:
[41-449]
LS
D
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A
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HIPAYK
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LSEPSSLQYL
P
Y
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Y
S
--
L
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--
M
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A
C
C
E
N
---
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-----
M
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----------
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-------------------
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G
V
A
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-
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-
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--
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-------------
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---------
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-------
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-
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A
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S
----
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-------
M
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P
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PR
A
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A
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E
G
F
A
V
I
K
E
A
F
D
STSRFARLQ
K
L
H
T
S
I
AGR
N
L
Y
I
R
F
Q
S
R
S
GDAMG
M
N
M
I
S
K
G
T
E
K
A
L
S
K
L
H
E
Y
F
PEMQILAVSGNYCTDKKPA
A
I
N
W
I
EGRG
K
S
V
V
C
E
A
V
I
P
A
K
V
V
R
EVLKTT
T
E
A
M
I
E
V
N
I
N
K
NL
V
G
S
A
M
A
GSIGGYNAH
A
A
N
I
V
T
A
I
Y
I
A
C
GQDAAQNVGSS
N
C
I
T
L
M
E
A
S
G
PTNE
D
L
Y
I
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C
T
M
PSIEIGTVGGGTNL
L
P
Q
Q
A
C
L
Q
M
L
GVQGACKDNPG
E
N
A
R
Q
L
A
R
I
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C
G
T
V
M
A
G
E
L
S
L
M
A
A
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A
A
GH
L
V
K
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H
M
I
HN
6
Fugue
59.28
20%
-51
- C3 -
1DQA
6
HMDH_HUMAN
A:
[41-449]
LS
D
A
E
I
I
Q
L
V
N
A
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HIPAYK
L
E
T
L
I
ET
H
E
R
G
V
S
I
R
R
Q
L
L
S
K
K
LSEPSSLQYL
P
Y
R
D
Y
N
Y
S
--
L
V
--
M
G
A
C
C
E
N
---
V
I
--------------
G
-----
Y
-----
M
---------
P
----------
I
P
-------------------
V
G
V
A
G
P
L
C
-
L
D
-
E
----------
K
----------
E
F
Q
V
-
P
M
A
T
-
T
E
-
G
-
C
L
--
V
--
A
-------------
S
---------
T
-------
N
R
G
-
C
R
A
I
G
L
G
G
G
A
S
S
----
R
V
L
A
D
G
-------
M
T
R
G
P
V
V
R
L
PR
A
C
D
S
A
E
V
K
A
W
L
E
T
S
E
G
F
A
V
I
K
E
A
F
D
STSRFARLQ
K
L
H
T
S
I
AGR
N
L
Y
I
R
F
Q
S
R
S
GDAMG
M
N
M
I
S
K
G
T
E
K
A
L
S
K
L
H
E
Y
F
PEMQILAVSGNYCTDKKPA
A
I
N
W
I
EGRG
K
S
V
V
C
E
A
V
I
P
A
K
V
V
R
EVLKTT
T
E
A
M
I
E
V
N
I
N
K
NL
V
G
S
A
M
A
GSIGGYNAH
A
A
N
I
V
T
A
I
Y
I
A
C
GQDAAQNVGSS
N
C
I
T
L
M
E
A
S
G
PTNE
D
L
Y
I
S
C
T
M
PSIEIGTVGGGTNL
L
P
Q
Q
A
C
L
Q
M
L
GVQGACKDNPG
E
N
A
R
Q
L
A
R
I
V
C
G
T
V
M
A
G
E
L
S
L
M
A
A
L
A
A
GH
L
V
K
S
H
M
I
HN
29
HHSearch
56.29
13%
-146
* C3 *
1HSS
-
IAA1_WHEAT
A:
[38-106]
----------------------------------------------------------------------------------------------------------------------------
L
R
-------------------
D
C
C
-
Q
Q
L
A
-
H
I
-
S
----------
E
----------
W
C
R
C
-
G
A
L
Y
-
S
M
-
L
-
D
S
--
M
--
Y
K
E
HG---------
A
FPRCR
R
E
V
V
K
-------
L
T
A
-
A
S
I
T
A
V
C
R
L
P
I
V
----
V
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AD
C
K
E
E
R
R
V
A
I
NACKPILYGKDP
T
P
A
C
C
E
R
I
R
V
T
H
I
E
C
VCPVI
T
P
K
L
A
A
L
V
D
V
N
R
M
V
R
L
I
E
G
CGRNVP
R
H
YKCGSITTP
46
96.82
100%
-130
- C- -
M046
-
A:
[1-113]
A
D
C
K
E
E
R
R
V
A
I
N
A
C
K
P
I
L
Y
G
K
D
P
T
P
A
C
C
E
R
I
R
V
T
H
I
E
C
V
C
P
V
I
T
P
K
L
A
A
L
V
D
V
N
R
M
V
R
L
I
E
G
C
G
R
N
V
P
R
H
Y
K
C
G
S
I
T
T
P
47
92.99
100%
-118
- C- -
M047
-
A:
[1-113]
A
D
C
K
E
E
R
R
V
A
I
N
A
C
K
P
I
L
Y
G
K
D
P
T
P
A
C
C
E
R
I
R
V
T
H
I
E
C
V
C
P
V
I
T
P
K
L
A
A
L
V
D
V
N
R
M
V
R
L
I
E
G
C
G
R
N
V
P
R
H
Y
K
C
G
S
I
T
T
P
44
91.86
100%
-121
- C- -
M044
-
A:
[1-114]
A
D
C
K
E
E
R
R
V
A
I
N
A
C
K
P
I
L
Y
G
K
D
P
T
P
A
C
C
E
R
I
R
V
T
H
I
E
C
V
C
P
V
I
T
P
K
L
A
A
L
V
D
V
N
R
M
V
R
L
I
E
G
C
G
R
N
V
P
R
H
Y
K
C
G
S
I
T
T
P
43
42.86
100%
13
- C- -
M043
-
A:
[3-124]
A
D
C
K
E
E
R
R
V
A
I
N
A
C
K
P
I
L
Y
G
K
D
P
T
P
A
C
C
E
R
I
R
V
T
H
I
E
C
V
C
P
V
I
T
P
K
L
A
A
L
V
D
V
N
R
M
V
R
L
I
E
G
C
G
R
N
V
P
R
H
Y
K
C
G
S
I
T
T
P