@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 762_tV_VITVI: (2014-05-14 )
AGECGNASPDTEAWKLAPCEAAAQNEKAAPSKSCCLQVKKIGQNPDCLCAVMLSNTAKSSGIKPEVAVTIPKRCNLADRPVGYKCGAYTLP
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------....-----.....10...--.----....20.-----..-..-------.-----------------.---------------------.-----------------30------------........40.---.--------.--------.---....50...-----...----------.------.------------60-------.---------.---.-......70-...-...--------.-.-----------.-80--.-----....---.----..90----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------AGEC-----GNASPDTE
A
W
--
K
----LAPCEAA-----AQ-NE-------K-----------------A---------------------A-----------------P
S
------------
K
S
C
C
L
Q
V
K
K
IG---Q--------N--------
P
---
D
C
L
C
A
V
M
L
S-----NTA----------K------S------------S--------G---------I---K-P
E
V
A
V
T
I
--
P
KR-CNL--------A-D-----------R-PV--G-----YKCG---A----YTLP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
79.77
21%
-83
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
------
Y
P
G
Q
A
F
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V
P
--
A
----
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P
A
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-----
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R
-
L
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N
GSQVP------------------
E
---------------------
A
-----------------
V
L
------------
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D
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Q
Q
L
A
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I
-------------
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--------
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---
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Y
S
-----
M
L
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----------
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-------
M
Y
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E
HGAFPRCR
R
--------
E
---------
V
---
V
-
K
L
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A
A
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I
--
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A
-V
C
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VDASG
D
-
G
-----------
A
-
Y
V
--
C
-----
K
D
V
A
---
A
----
Y
P
D
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
79.57
21%
-67
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
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C
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--
A
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-------
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-----------------
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---------------------
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-----------------
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S
------------
A
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C
C
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N
N
A
A
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--------
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--------
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A
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N
C
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K
N
-----
A
A
A
----------
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------
V
------------
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--------
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---------
L
---
N
-
A
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N
A
A
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--
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S
K
-
C
G
V
--------
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I
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-----------
Y
-
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I
--
S
TS---
T
D
C
S
---
R
----
V
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
76.41
33%
-59
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
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-
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--------
A
-
N
-----------
A
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----------
T
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
74.70
23%
-78
- C3 -
1HSS
-
IAA1_WHEAT
A:
[16-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
L
P
A
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P
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-----
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-------
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GSQ-------------
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P
E
-------------------
A
-----------------
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------------
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---------GAFPRCR
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---
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--
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A
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--------
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-
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-----------
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
68.62
28%
-52
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
T
S
--
N
----
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-----
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-------
G
---------------------------------------------------------
P
L
------------
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K
A
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---
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--------
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A
RT
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---
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--
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-----
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-
A
----------
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------
A
------------
I
S-------
G
---------
I
---
N
-
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A
A
G
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--
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--------
N
-
I
-----------
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I
SP
S
-----
T
D
C
S
---
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
68.62
32%
-60
- C3 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
L
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M
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--
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----
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P----------------
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---------------------
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-------------
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--------
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---------
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---
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--
P
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Q
-
C
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--------
A
-
N
-----------
A
-
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
68.19
19%
-96
- C3 -
1SM7
-
?
A:
[14-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
----
L
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A
C
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W
-----
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R
-
Q
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-------
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NQWGPQQGP------
S
-----------------
L
R
------------
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N
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Y
Q
E
-------------
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--------
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---
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P
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-----
A
A
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----------
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RVQG-
Q
------------
H
--------
G
PFQST----
R
---
I
-
Y
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I
A
K
N
L
--
P
N
V
-
C
N
M
--------
K
-
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
65.00
14%
-58
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGR
Q
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-----
S
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--
N
----
L
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H
-----
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Q
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-------
I
MGEQEQYDSYDIRSTR
S
S
---------------------
D
-----------------
Q
Q
------------
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R
C
C
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E
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N
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M
E
---
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--------
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---
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CDRLQDR-
Q
------
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---------
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---
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---
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----
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GRCS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
64.46
21%
-73
* C3 *
1BEA
-
ITRF_MAIZE
A:
[16-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
P
S
C
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Y
-----
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T
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S
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-------
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CGIG-------------
P
R--------------------
L
P
W
P
E
-------------
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K
------------
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A
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--------
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---
Y
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-----
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A
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-------
P
------
P
G
PDAQL
E
G
R
---
L
E
D
LPGCP
R
E
---------
V
---
Q
-
R
G
F
A
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L
VT
E
A
E
-
C
N
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--------
A
-
T
-----------
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
63.44
23%
-44
- C3 -
1S1M
-
PYRG_ECOLI
A:
[1-544]
MT
T
N
Y
I
F
V
T
G
G
VVSSLG
K
G
I
A
A
A
S
L
A
A
I
L
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A
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GLN
V
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PYINVDPGTMSPIQH
G
E
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EDG
A
E
T
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L
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IR
T
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RRNNFT
T
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GDYLGATVQVIP
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EGHD
V
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TVGDIES
L
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---------------------------
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VDS
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YIELPDAY
K
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N
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RGVEILKGLD
A
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YRG
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HVANMENANSTEFVPDCKYPVVALITEWRDENGNVETMRL
G
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DDS
L
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NAP
T
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EVNNML
L
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GLRVAGRSGDDQLVE
I
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PNHP
W
F
V
A
C
QFHPEFTSTPRDGH
P
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9
Fugue
62.15
20%
-66
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
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30
HHSearch
61.72
20%
-87
- C3 -
1B1U
-
IAAT_ELECO
A:
[16-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
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CGVGPR-----------
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RLLQDL
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--------
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CP
R
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-----
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E
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E
-
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-
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G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
61.71
19%
-100
- C3 -
3OB4
-
?
A:
[428-483]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
------------
E
R
C
C
N
E
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---
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D------
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------
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RQ
Q
E
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----
Q
---
F
-
K
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E
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R
N
L
--
P
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Q
-
C
G
L
--------
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
61.32
28%
-24
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
Q
V
A
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--
A
----
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-----------------
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------------
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---
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----------
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S-------
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---------
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---
N
-
A
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A
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I
--
P
S
K
-
C
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--------
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-----------
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-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
61.21
22%
-52
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
S
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--
S
----
L
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-
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G
-------------------------
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---------------------
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A
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--------
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-----------
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27
HHSearch
59.98
22%
-47
- C3 -
1PSY
-
2SS_RICCO
A:
[17-116]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
C
R
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E
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RK
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L
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-----------------
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GEEVLRMPGDENQQQES
Q
-----------------
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QLHG
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------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
59.58
28%
-71
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
Q
----
L
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A
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---
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A
-
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
58.62
19%
-35
- C3 -
1EFP
-
ETFA_PARDE
A:
[1-183]
-------------------------------------------------------------------------------------------------------------------------------------A
V
L
L
L
G
EVTNGALN
R
D
A
T
A
K
A
V
A
A
V
KA
L
G
D
V
T
V
L
C
A
G
-
A
S
A
K
A
A
A
E
--
E
----
A
A
K
I
A
G
V
A
K
V
L
V
A
E
-
D
A
LY-----
G
-----------------
H
---------------------
R
-----------------
L
A
------------
E
P
T
A
A
L
I
V
G
L
A
---
G
--------
D
--------
Y
---
S
---
H
I
A
A
P
-----
A
T
T
----------
D
------
A
------------
K
--------
N
---------
V
---
M
-
P
R
V
A
A
L
L
---
D
V
-
M
V
L
--------
S
-
D
VSAILDAD
T
F
E
R
-
P
I
YA
G
N
A
I
Q
V
V
K
S
K
---
D
A
K
K
V
F
T
I
R
TASFDAAGEGGTA
P
V
T
E
T
A
A
A
A
D
PGL
S
S
W
V
A
D
E
V
A
E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
58.41
17%
-73
- C3 -
1W2Q
-
CONG_ARAHY
A:
[23-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
N
----
L
K
P
C
E
Q
H
-----
I
M
-
Q
R
-------
I
-----------------
M
---------------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
------------
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
--------
Q
---
G
C
M
C
E
A
L
Q
Q
-----
I
M
E
----------
N
Q
CD---
R
L-----------
Q
--------
D
RQ-------
M
V
Q
Q
F
-
K
R
E
L
M
S
L
--
P
Q
Q
-
C
N
F
--------
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
58.35
24%
-132
- C3 -
2DS2
-
?
B:
[7-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------------
R
Q
C
C
N
Q
L
R
Q
V
-------------
D
--------
R
---
P
C
V
C
P
V
L
R
Q
-----
A
A
Q
----------
Q
V
L
Q
R
Q
I
I
------------
Q
--------
G
P
Q
Q
L
R
----
R
---
L
-
F
D
A
A
R
N
L
--
P
N
I
-
C
N
I
--------
P
-
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGNASPDTE
A
W
K
LAPCEAAAQNEKAAP
S
K
S
C
C
L
Q
V
K
K
IGQN
P
D
C
L
C
A
V
M
L
SNTAKSSGIKP
E
V
A
V
T
I
P
KRCNLADRPVGYKCGAYTLP
41
94.15
100%
-88
- C- -
M041
-
A:
[1-148]
A
G
E
C
G
N
A
S
P
D
T
E
A
W
K
L
A
P
C
E
A
A
A
Q
N
E
K
A
A
P
S
K
S
C
C
L
Q
V
K
K
I
G
Q
N
P
D
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
I
K
P
E
V
A
V
T
I
P
K
R
C
N
L
A
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P
45
93.12
100%
-85
- C- -
M045
-
A:
[1-163]
A
G
E
C
G
N
A
S
P
D
T
E
A
W
K
L
A
P
C
E
A
A
A
Q
N
E
K
A
A
P
S
K
S
C
C
L
Q
V
K
K
I
G
Q
N
P
D
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
I
K
P
E
V
A
V
T
I
P
K
R
C
N
L
A
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P