@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 774_tI_MEDTR: (2014-05-15 )
AITCGTVTGSLAPCIGYLKGGSGPSAACCGGVKRLNSAATTTPDRQAACNCLKSAAGAISGLNPNIAAGLPGKCGVNIPYKISTSTNCATIRA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..--10--.........----------------------20---.-----.-------------.-------------------..----...---.30........40----------.........50.--...-.-----...-------60------.---------.----------.----------.----------.....70-.........80..--......90..-------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
GTV--TG--
S
---
L
A
P
C
I
G
YLK----------------------G----G-----S-------------G-------------------P
S
----
A
A
C
---
C
G
G
V
K
R
L
NSAAT-----------TTP
D
R
Q
A
A
C
N
C
L
--
K
S
A
-
A
-----
G
AI-------S-------G---------L----------N----------P----------NIAAGL--PGKCGVN
I
P
Y
K
IS--TST
N
C
A
TIRA-------
2
HHSearch
94.05
65%
-131
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----------------------
N
----
T
-----
G
---------------------------------
P
L
----
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
--
K
S
A
-
A
-----
G
A
I
-------
S
-------
G
---------
I
----------
N
----------
L
----------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
--
P
S
T
D
C
S
K
V
Q
--------
1
HHSearch
89.93
63%
-122
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
----------------------
G
----
G
-----
G
-------------
A
-------------------
V
P
----
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
--
K
Q
L
-
S
-----
A
S
V
-------
P
-------
G
---------
V
----------
N
----------
P
----------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
--
A
S
T
N
C
A
T
V
K
--------
5
HHSearch
88.16
60%
-130
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----------------------
K
----
G
-----
G
-------------
V
-------------------
V
P
----
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
--
K
A
A
-
A
-----
G
A
V
-------
R
-------
G
---------
I
----------
N
----------
P
----------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
--
T
S
T
N
C
N
S
I
N
--------
30
SP3
87.14
59%
-118
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----------------------
G
----
Q
-----
G
-------------
S
G------------------
P
S
----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
-----
A
G
V
-------
S
-------
G
---------
L
----------
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
--------
6
HHSearch
86.02
49%
-122
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----------------------
G
----
G
-----
P
-------------
G
-------------------
P
S
----
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
--
K
G
I
-
A
-----
R
G
I
-------
H
-------
N
---------
L
----------
N
----------
E
----------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
--
L
N
I
D
C
S
R
V
---------
4
HHSearch
84.00
60%
-110
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----------------------
G
----
Q
-----
G
-------------
S
G------------------
P
S
----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
-----
A
G
V
-------
S
-------
G
---------
L
----------
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
--
T
S
T
D
C
S
R
V
N
--------
17
HHSearch
59.70
30%
-132
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
----------------------
Q
QLA-
G
-----
S
P
F
S
E
NQWGPQQGP
S
-------------------
L
R
----
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
--
K
Q
A
-
A
-----
K
S
V
-------
R
VQ-----
G
Q--------
H
----------
G
----------
P
FQST
R
I
Y
---
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------
19
HHSearch
56.46
23%
-159
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
----------------------
L
Q
C
N
-
G
-----
S
-------------
Q
VP
E
A
---------------
V
L
----
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
--
Y
S
M
-
L
-----
D
S
M
-------
Y
K
E
H---------------GAFPRCR
R
E
V
V
----------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
---------------------
12
HHSearch
55.89
19%
-140
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
----------------------
S
R
TCG
I
-----
G
-------------
P
RLP
W
P
E
-------------
L
K
----
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
--
S
I
L
-
M
-----
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
----------
E
D
LPGCP
R
E
V
Q
R
----------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------
15
HHSearch
53.70
27%
-84
- C2 -
1PSY
-
2SS_RICCO
A:
[25-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----------------------
Q
----
S
S
S
R
--
R
-------------
S
T
GEEVLRMPGDENQQQESQ
Q
L
----
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
--
K
Y
I
-
A
-----
E
D
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
---
V
----------
A
----------
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
--
T
----------------
36
SP3
51.99
19%
-152
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
--
A
---
L
P
A
C
R
P
L
L
R
----------------------
L
Q
C
N
-
G
-----
S
-------------
Q
-------------------
V
P
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
--
Y
S
M
-
L
-----
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
----------
R
R
E
V
V
------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
A
S
GD
G
A
Y
V
C
K
D
V
A
A
YPDA---
7
HHSearch
48.52
27%
-95
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----------------------
K
----
E
-----
N
PT-----------
S
-------------------
P
S
----
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
--
N
S
P
W
L
-----
G
S
--------
F
-------
G
---------
V
----------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------
29
Fugue
47.85
22%
-96
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
KNLGERSQVSPR
M
---------
R
----
E
-----
E
-------------
D
-------------------
H
K
----
Q
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
--
M
M
M
-
L
N
EPMW
I
R
M
-------
R
-------
D
---------
Q
----------
V
----------
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
---------
M
S
Q
P
C
Q
M
----------
21
Fugue
45.94
25%
-77
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----------------------
K
----
E
NP---
T
-------------
S
-------------------
P
S
----
Q
P
C
---
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
G
Y
K
--
N
S
P
-
W
-----
L
G
S
-------
F
-------
G
---------
V
----------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------
P
T
C
------------
26
Fugue
45.77
23%
-76
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
--
D
---
L
S
S
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
GEEVLRMPGDENQQ
Q
----
E
-----
S
-------------
Q
-------------------
Q
L
----
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
--
K
Y
I
-
A
-----
E
D
Q
-------
I
-------
Q
---------
Q
----------
G
----------
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
--
G
V
R
C
M
R
Q
--
T
R
T
N
-------------
16
HHSearch
44.52
21%
-100
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
----------------------
K
----
N
LGERS
Q
VSPR
M
R
E
E
-----
D
-------------------
H
K
----
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
--
M
M
M
-
L
-----
N
E
P
-------
M
-------
W
IRMR
D
----
Q
----------
V
----------
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------
38
SP3
42.81
18%
-122
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----------------------
N
----
A
-------------------
A
-------------------
P
D
----
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
R
-
A
-----
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
----------
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
--
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M
11
HHSearch
41.59
16%
-124
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
----------------------
T
R
T
CG
V
-----
G
-------------
P
RLA
T
Q
E
-------------
M
K
----
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
--
R
I
L
-
M
-----
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
----------
P
GCP
R
Q
V
Q
R
A
-
F
----------
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------
35
SP3
41.47
18%
-111
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-----------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
--
S
---
V
V
D
A
L
R
A
V
R
----------------------
N
----
A
-------------------
A
-------------------
P
D
----
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
R
-
A
-----
P
T
V
-------
M
L
E
S
S
G
--
G
---------
L
----------
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
--
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M
8
HHSearch
38.31
36%
-87
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
Q
---
L
T
V
C
T
G
A
I
A
----------------------
G
----
G
-----
A
-------------
R
-------------------
P
T
----
A
A
C
---
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
R
Y
-----
G
R
----------------
Y
---------
V
----------
N
----------
S
----------
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-----------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
A
I
T
C
GTVTG
S
L
A
P
C
I
G
YLKGGSGP
S
A
A
C
C
G
G
V
K
R
L
NSAATTTP
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
AISGLNPNIAAGLPGKCGVN
I
P
Y
K
ISTST
N
C
A
TIRA
45
91.87
100%
-122
- C- -
M045
-
A:
[1-94]
A
I
T
C
G
T
V
T
G
S
L
A
P
C
I
G
Y
L
K
G
G
S
G
P
S
A
A
C
C
G
G
V
K
R
L
N
S
A
A
T
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
A
I
S
G
L
N
P
N
I
A
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
A
41
91.04
100%
-126
- C- -
M041
-
A:
[1-94]
A
I
T
C
G
T
V
T
G
S
L
A
P
C
I
G
Y
L
K
G
G
S
G
P
S
A
A
C
C
G
G
V
K
R
L
N
S
A
A
T
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
A
I
S
G
L
N
P
N
I
A
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
A
40
90.46
100%
-120
- C- -
M040
-
A:
[1-94]
A
I
T
C
G
T
V
T
G
S
L
A
P
C
I
G
Y
L
K
G
G
S
G
P
S
A
A
C
C
G
G
V
K
R
L
N
S
A
A
T
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
A
I
S
G
L
N
P
N
I
A
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
A
44
89.35
100%
-127
- C- -
M044
-
A:
[1-94]
A
I
T
C
G
T
V
T
G
S
L
A
P
C
I
G
Y
L
K
G
G
S
G
P
S
A
A
C
C
G
G
V
K
R
L
N
S
A
A
T
T
T
P
D
R
Q
A
A
C
N
C
L
K
S
A
A
G
A
I
S
G
L
N
P
N
I
A
A
G
L
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
T
I
R
A