@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-15 )
ALSCGQIQLTVAPCIGYLRTPGPSVPAPCCNGIRSVYYQAKTTADRQGVCRCLKSTTLSLPGLNLPALAGAPAKCGVNVPYKVAPSIDCNTVRH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........--10........----20----.--.------------------.------------.-----.----...---30........40-----------........50.....-...60------.-------.---------.----.----------.-----....70--........80........90...----------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALSCGQIQL--TVAPCIGYLR----TP----G--P------------------S------------V-----P----APC---CNGIRSVYYQAK-----------TTADRQGVCRCLKST-TLSL-------P-------G---------L----N----------L-----PALAGA--PAKCGVNVPYKVAPSIDCNTVRH----------------------------------------------------------------------------
24
HHSearch
95.80
50%
-130
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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--
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----
G
---------------------
A
------------
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-----
P
----
P
A
C
---
C
N
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N
N
L
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-----------
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P
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N
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-
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-------
P
-------
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---------
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----
N
----------
P
-----
N
N
A
A
A
L
--
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I
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Y
K
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T
N
C
A
T
V
K
-----------------------------------------------------------------------------
26
HHSearch
94.45
43%
-142
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
--
N
L
A
Q
C
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F
L
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----
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----
G
---------------------
V
------------
V
-----
P
----
P
S
C
---
C
T
G
V
K
N
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N
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R
-----------
T
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C
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A
-
A
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-------
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-------
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---------
I
----
N
----------
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-----
N
N
A
E
A
L
--
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K
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G
V
N
I
P
Y
K
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T
N
C
N
S
I
N
-----------------------------------------------------------------------------
11
SP3
92.23
45%
-128
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
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V
A
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--
A
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----
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--
S
------------------
G
------------
P
-----
S
----
A
G
C
---
C
S
G
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S
L
N
N
A
A
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-----------
T
T
A
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A
-
A
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-------
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-------
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---------
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----
N
----------
A
-----
G
N
A
A
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T
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R
V
N
-----------------------------------------------------------------------------
23
HHSearch
92.08
47%
-124
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
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Q
V
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--
N
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----
G
----------------------------------
P
-----
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----
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---
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---------
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----
N
----------
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-----
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--
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Q
-----------------------------------------------------------------------------
22
HHSearch
89.17
46%
-132
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
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----
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--
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------------------
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------------
P
-----
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----
A
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---
C
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S
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A
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-----------
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A
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-------
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-------
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---------
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----
N
----------
A
-----
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N
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S
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Y
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T
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C
S
R
V
N
-----------------------------------------------------------------------------
25
HHSearch
84.99
37%
-141
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
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S
--
L
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-------
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------------------
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------------
P
-----
S
----
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---
C
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-----------
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---------
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----
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----------
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-----
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V
------------------------------------------------------------------------------
36
HHSearch
62.07
25%
-134
- C2 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
----
Q
Q
LAG-
S
--
P
F
S
E
NQWGPQQGP------
S
------------
L
-----
R
----
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
V
-------
R
VQ-----
G
Q--------
H
----
G
PFQST
R
I
---
Y
-----
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
------------------------------------------------------------------------------------------
40
HHSearch
61.16
21%
-127
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
L
P
A
C
R
P
L
L
R
----
L
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C
N
--
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--
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------------------
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VP
E
A
--------
V
-----
L
----
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
-------
Y
K
E
HGAFP
R
CR
R
E
-----
V
----
V
----------
K
-----
L
T
A
A
S
I
--
T
A
V
C
R
L
P
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V
V
D
----------------------------------------------------------------------------------------
2
Fugue
59.82
25%
-114
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
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--
E
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------------------
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------------
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-----
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S---
Q
P
C
---
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L
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H
-------------------
A
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F
A
C
L
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K
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S
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-
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-------
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----
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----------
P
-----
E
L
A
S
A
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--
P
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Q
C
G
L
A
N
A
------
P
T
C
---------------------------------------------------------------------------------
30
HHSearch
57.82
19%
-133
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
--
P
------------------
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------------
L
P
W
P
E
L
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----
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
----
E
D
LPGCP
R
E
V
Q
R
-----
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
------------------------------------------------------------------------------------------
17
SP3
56.39
17%
-115
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
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D
V
A
L
L
T
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N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
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R
G
L
L
T
A
E
R
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M
L
N
L
V
G
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L
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G
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A
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A
T
A
A
W
V
D
A
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RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
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G
G
V
N
H
R
LGLGD
A
A
L
I
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N
H
V
A
A
A
G
S
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V
D
A
L
R
A
V
R
----
N
A
----
A
--
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------------------
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------------
L
-----
P
----
C
E
V
E
--
V
D
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E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
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--
G
-------
G
---------
L
----
S
----------
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-----
Q
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A
A
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Y
---
A
E
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---
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A
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L
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M---------------------------------------------------------------------
27
HHSearch
55.99
24%
-100
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
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D
L
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T-----------------
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------------
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-----
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----
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---
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A
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A
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G
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K
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----
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E
L
A
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A
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--
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C
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-----------------------------------------------------------------------------------------
9
Fugue
54.81
16%
-85
- C1 -
1WMX
-
?
A:
[8-180]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------L
L
D
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Y
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W
W
I
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-
L
L
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----
N
----------
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V
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YERVYGL
E
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T
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ISNY
V
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K
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LRDLMKINNGFDPSSVT
C
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RYA
D
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39
HHSearch
53.85
15%
-101
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
R
I
MG-
E
QE
Q
------------------
Y
DSYDIRSTR
S
S
D
Q
-----
Q
----
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
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C
M
C
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A
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DRLQ---
D
---------
R
----
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----------
M
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K
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E
L
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L
--
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Q
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C
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A
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------------------------------------------------------------------------------------------
19
SP3
53.11
22%
-121
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
----
V
P
--
A
L
P
A
C
R
P
L
L
R
L
Q
--
C
N
----
G
--
S
------------------
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------------
V
-----
P
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
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M
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K
E
HGAF
P
-------
R
---------
C
----
R
R
E
V
V
------
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A
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--
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Y
V
C
K
D
V
A
A
YPDA--------------------------------------------------------------------
34
HHSearch
50.83
18%
-117
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV
G
--
P
------------------
R
LA
T
Q
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-------
M
-----
K
----
A
R
C
---
C
R
Q
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-
M
D
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-------
V
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PS----
G
Q
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E
G
RLLQD
L
----
P
GCP
R
Q
V
Q
R
A
-
F
-----
A
P
K
L
V
T
--
E
V
E
C
N
L
A
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I
H
-----------------------------------------------------------------------------------------
35
HHSearch
50.49
22%
-91
- C2 -
3OB4
-
?
A:
[427-485]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-----
Q
----
E
R
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
N
Q
S
DRL---
Q
-------
G
---------
R
----
Q
Q
E
Q
Q
F
-----
K
-----
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
------------------------------------------------------------------------------------------
7
Fugue
48.66
26%
-106
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
A
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Q
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L
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A
------------------
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-----
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---
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A
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Q
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C
F
C
-----------
Q
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P
R
Y
G
R
Y
V
N
S
-----------------------------------------------------
P
N
A
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K
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--
V
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A
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P
T
-------
C
H
--------------------------------------------------------------------------------
37
HHSearch
47.91
21%
-78
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
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GEEVLRMPGDENQQQES
Q
------------
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-----
L
----
Q
Q
C
---
C
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V
-------------------
R
D
E
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-
A
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-------
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QLH-
G
---------
E
E
S
E
R
V
----------
A
-----
Q
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A
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--
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--
R
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Q
--------------------------------------------------------------------------------------
13
SP3
47.87
18%
-111
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-----------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
------
G
--
S
V
V
D
A
L
R
A
V
R
----
N
A
----
A
--
P
------------------
D
------------
L
-----
P
----
C
E
V
E
--
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
----
S
----------
L
-----
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
V
L
D
I
G
L
D
M---------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ALSCGQIQLTVAPCIGYLRTPGPSVPAPCCNGIRSVYYQAKTTADRQGVCRCLKSTTLSLPGLNLPALAGAPAKCGVNVPYKVAPSIDCNTVRH
45
97.79
100%
-150
- C- -
M045
-
A:
[1-96]
A
L
S
C
G
Q
I
Q
L
T
V
A
P
C
I
G
Y
L
R
T
P
G
P
S
V
P
A
P
C
C
N
G
I
R
S
V
Y
Y
Q
A
K
T
T
A
D
R
Q
G
V
C
R
C
L
K
S
T
T
L
S
L
P
G
L
N
L
P
A
L
A
G
A
P
A
K
C
G
V
N
V
P
Y
K
V
A
P
S
I
D
C
N
T
V
R
H
41
96.45
100%
-145
- C- -
M041
-
A:
[1-111]
A
L
S
C
G
Q
I
Q
L
T
V
A
P
C
I
G
Y
L
R
T
P
G
P
S
V
P
A
P
C
C
N
G
I
R
S
V
Y
Y
Q
A
K
T
T
A
D
R
Q
G
V
C
R
C
L
K
S
T
T
L
S
L
P
G
L
N
L
P
A
L
A
G
A
P
A
K
C
G
V
N
V
P
Y
K
V
A
P
S
I
D
C
N
T
V
R
H
48
49.84
100%
-
- C- -
M048
-
A:
[1-94]
A
L
S
C
G
Q
I
Q
L
T
V
A
P
C
I
G
Y
L
R
T
P
G
P
S
V
P
A
P
C
C
N
G
I
R
S
V
Y
Y
Q
A
K
T
T
A
D
R
Q
G
V
C
R
C
L
K
S
T
T
L
S
L
P
G
L
N
L
P
A
L
A
G
A
P
A
K
C
G
V
N
V
P
Y
K
V
A
P
S
I
D
C
N
T
V
R
H
43
32.83
100%
-2
- C- -
M043
-
A:
[2-131]
A
L
S
C
G
Q
I
Q
L
T
V
A
P
C
I
G
Y
L
R
T
P
G
P
S
V
P
A
P
C
C
N
G
I
R
S
V
Y
Y
Q
A
K
T
T
A
D
R
Q
G
V
C
R
C
L
K
S
T
T
L
S
L
P
G
L
N
L
P
A
L
A
G
A
P
A
K
C
G
V
N
V
P
Y
K
V
A
P
S
I
D
C
N
T
V
R
H