@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 791_tII_ARATH: (2014-05-15 )
KKDLPFCNVELLPCVLPFKVRGHGSKLPNGCCEKMKKSTSCMCRFLMAKERDLNAAAHRIFWFCKISVPNCPKI
Atome Classification :
(20 SA)
----------------------------........-.---10...---------------..--------...20--.------------.....--.---.----.30......-----------.-----------.-40.-.....---..---------.--50-------------..----..-...-.60-........-70...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------KKDLPFCN-
V
---
E
L
L
P
C
---------------VL--------
P
F
K
V---R------------GHGSK--L---
P
----
N
G
C
C
E
K
M
K
K
-----------
S
-----------
T
-
S
-
C
-
M
C
R
F
L
---
M
A---------K--ER-------------D
L
----
N
A
-
A
A
H
-
R
I
F
-
W
F
C
K
ISVP-NCPKI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
80.90
26%
-105
- C8 -
1SIY
-
NLTP1_VIGRR
A:
[9-78]
-----------------------------------------
N
L
A
Q
C
---------------
I
---------
G
F
L
Q
---
K
------------
G
--
G
V
--
V
---
P
----
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----------
A
-
V
-
C
-
S
C
L
K
A
---
A
A
---------
G
--
A
V
R------------
G
I
----
N
P
N
N
A
E
-
A
L
P
-
G
K
C
G
V
N
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
80.79
31%
-113
- C8 -
1AFH
-
NLTP_MAIZE
A:
[10-80]
-----------------------------------------
A
I
A
P
C
---------------
I
---------
S
Y
A
R
---
G
------------
Q
-
G
S
G
--
P
---
S
----
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R-----
T
T
A
D
R
R
------
A
-
A
-
C
-
N
C
L
K
N
---
A
A
---------
A
--
G
V
S------------
G
L
----
N
A
G
N
A
A
-
S
I
P
-
S
K
C
G
V
S
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
79.20
26%
-112
- C8 -
2ALG
2
NLTP1_PRUPE
A:
[10-79]
-----------------------------------------
S
L
A
P
C
---------------
I
---------
P
Y
V
R
---
G
------------
G
--
G
A
--
V
---
P
----
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----------
A
-
A
-
C
-
N
C
L
K
Q
---
L
S
---------
A
--
S
V
P------------
G
V
----
N
P
N
N
A
A
-
A
L
P
-
G
K
C
G
V
S
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
77.59
20%
-117
* C8 *
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
-
M
---
Y
L
M
K
N
---------------
L
G
--------
E
R
S
Q
VSP
R
------------
M
R
E
E
D
--
H
---
K
----
Q
L
C
C
M
Q
L
K
N
L----------
D
-----------
E
-
K
-
C
-
M
C
P
A
I
---
M
M
M
L
N
EPMWIR
M
--
R
D
-------------
Q
V
----
M
S
-
M
A
H
-
N
L
P
-
I
E
C
N
L
M
S
Q
-
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
76.26
26%
-87
- C8 -
1BWO
2
NLTP1_WHEAT
A:
[9-78]
-----------------------------------------
L
V
R
P
C
---------------
L
---------
S
Y
V
Q
---
G
------------
G
--
P
G
--
P
---
S
----
G
Q
C
C
D
G
V
K
N
-----------
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
-
C
-
N
C
L
K
G
---
I
A
---------
R
--
G
I
H------------
N
L
----
N
E
D
N
A
R
-
S
I
P
-
P
K
C
G
V
N
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
72.33
27%
-101
- C8 -
1L6H
-
NLTPX_ORYSJ
A:
[3-69]
----------------------------------
C
N
-
A
G--
Q
L
T
V
C
---------------
T
---------
G
A
I
A
---
G
------------
G
--
A
R
--
P
---
T
----
A
A
C
C
S
S
L
R
A
-----------
Q
-----------
Q
-
G
-
C
-
F
C
Q
F
A
---
K
D
---------
P
RY
G
R
-------------
Y
V
----
N
S
P
N
A
R
-
K
A
V
-
S
S
C
G
I
A
L
P
-
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
71.44
23%
-124
- C8 -
4B3X
3
IF2_THET8
A:
[1-363]
-------------------MAKVR
I
Y
Q
L
A
K
E
L
G
M
E
T
-
Q
---
E
L
L
E
L
---------------
L
D
--------
Q
M
G
V
AY-
K
------------
S
H
A
S
T
--
L
---
E
----
E
K
D
A
E
A
V
R
E
-----------------------------
L
V
K
E
Q
---
R
G
---------
L
--
Q
E
-------------
K
L
----
A
E
-
E
E
R
-
R
K
-------
S
L
P
-
R
R
P
P
V
V
V
I
M
G
HVDHG
K
T
T
L
L
D
Y
L
R
K
S
R
I
AEKEGGG
I
T
Q
H
VG
A
F
E
V
K
T
PQ
G
T
V
V
F
I
D
T
PGHEAFTTIRQRGAKVAD
I
A
V
I
V
I
A
ADDGIM
P
Q
T
E
E
A
I
A
H
A
K
A
A
G
A
K
L
I
F
A
INKIDLPQAD
P
E
K
V
K
R
Q
L
M
E
R
G
F
V
P
EEYGGD
A
I
V
I
P
I
S
AKTGQG
V
Q
D
L
L
E
M
I
L
L
L
A
E
L
E
D
Y
R
A
D
PNAE
P
R
G
V
I
L
E
S
K
L
DKQA
G
I
I
A
N
M
L
V
Q
E
GTFRVG
D
Y
V
V
A
GE
A
Y
G
R
IR
A
M
M
D
ADGNQRKEAGPG
S
A
V
Q
V
L
GFQELPHAG
D
V
V
E
W
V
PD
L
E
A
A
K
E
I
A
E
E
R
K
E
E
R
K
A
R
E
E
E
E
K
A
RRPRTMAELLR
1
HHSearch
70.64
23%
-123
- C8 -
1N89
1
NLT2G_WHEAT
A:
[2-67]
----------------------------------
C
Q
-
A
S--
Q
L
A
V
C
---------------
A
---------
S
A
I
L
---
S
------------
G
--
A
K
--
P
---
S
----
G
E
C
C
G
N
L
R
A
-----------
Q
-----------
Q
-
G
-
C
-
F
C
Q
Y
A
---
K
D
---------
P
TY
G
Q
-------------
Y
I
----
R
S
P
H
A
R
-
D
T
L
-
T
S
C
G
L
A
V
P
-
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
69.57
16%
-143
- C8 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------
A
I
D
L
C
G
-
M
S
Q
D
E
L
N
E
C
---------------
K
P
--------
A
V
S
K
---
E
------------
N
P
-
T
S
--
P
---
S
----
Q
P
C
C
T
A
L
Q
H
A----------
D
-----------
F
-
A
-
C
-
L
C
G
Y
K
---
N
S
---------
P
--
W
L
-------------
G
S
F
GVD
P
E
-
L
A
S
-
A
L
P
-
K
Q
C
G
L
A
N
A
P
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
69.03
23%
-105
- C8 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------
A
G
C
N
A
G
---
Q
L
T
V
C
---------------
T
G
--------
A
I
A
------------------
G
G
A
R
--
P
---
T
----
A
A
C
C
S
S
L
R
A
-----------
Q
-----------
Q
-
G
-
C
-
F
C
Q
F
A
---
K
D
---------
P
--
R
Y
-------------
G
R
YVN-
S
P
-
N
A
R
-
K
A
V
-
S
S
C
G
I
A
L
P
-
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
68.35
21%
-114
- C8 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------
A
G
C
N
-
A
G--
Q
L
T
V
C
---------------
T
G
--------
A
--
I
---
A
------------
G
-
G
A
R
--
P
---
T
----
A
A
C
C
S
S
L
R
A
-----------
Q
-----------
Q
-
G
-
C
-
F
C
Q
F
A
K
DP
R
Y
---------
G
--
R
Y
-------------
V
N
----
S
P
-
N
A
R
-
K
A
V
-
S
S
C
G
I
A
L
P
-
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
68.28
23%
-91
- C8 -
1T12
-
NLTP1_TOBAC
A:
[10-78]
-----------------------------------------
N
L
A
P
C
---------------
L
---------
A
Y
L
R
---
N
------------
T
--
G
---
P
---
L
----
G
R
C
C
G
G
V
K
A
-----------
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
-
C
-
T
C
L
K
S
---
A
A
---------
G
--
A
I
S------------
G
I
----
N
L
G
K
A
A
-
G
L
P
-
S
T
C
G
V
N
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
62.28
18%
-113
- C8 -
2RKN
2
DIRL1_ARATH
A:
[11-77]
-----------------------------------------
E
L
N
E
C
---------------
K
---------
P
A
V
S
---
K
------------
E
N
P
T
S
--
P
---
S
----
Q
P
C
C
T
A
L
Q
H
-----------
A
-----------
D
F
A
-
C
-
L
C
G
Y
K
---
N
S
P
W
L
------
G
--
S
F
-------------
G
V
----
D
P
E
L
A
S
-
A
L
P
-
K
Q
C
G
L
A
N
A
P
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
61.44
14%
-104
- C8 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-------GPMRRERGRQGDSSSC
E
R
Q
V
D
R
V
N
L
K
P
C
E
-
Q
---
H
I
M
Q
R
---------------
I
M
GEQEQYDS
Y
D
I
R
---
S
------------
T
R
S
S
D
--
Q
---
Q
----
Q
R
C
C
D
E
L
N
E
MEN--------
T
-----------
Q
-
G
-
C
-
M
C
E
A
L
---
Q
Q
---------
I
--
M
E
N
Q
CDRLQDRQMV
Q
Q
F
----
K
R
-
E
L
M
-
S
L
P
-
Q
Q
C
N
F
R
A
P
-
Q
R
C
D
L
DVSGGRCS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
56.77
12%
-100
- C9 -
1JJU
-
?
A:
[274-351]
----------------------------------
A
A
-
P
---
Q
V
L
A
----------------
V
A
--------
P
A
R
L
---
K
IG
E
E
T
Q
L
R
V
A
G
T
G
L
G
S
D
L
T
L
---
P
----
E
G
V
A
G
S
V
E
S
-----------
A
-----------
G
-
N
-
G
-
V
T
V
L
K
---
L
T
---------
A
--
T
G
-------------
T
P
----
G
P
-
V
S
L
-
E
L
G
G
Q
K
V
D
L
V
A
Y
-
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
53.74
17%
-61
* C7 *
2R2C
-
?
A:
[36-180]
-------------------K
S
Y
K
T
WDVP
I
A
K
I
N
I
F
A
-
V
---
A
E
Y
T
D
---------------
T
Q
--------
K
I
K
V
---
T
------------
V
K
G
K
I
--
L
---
E
----
G
N
T
L
P
K
----------------------------
S
M
V
-
Q
V
Y
L
L
---
E
D
---------
K
--
N
H
-------------
V
L
----
R
G
-
A
V
N
-
G
I
W
-
G
E
E
F
V
N
L
K
-
D
Y
L
Y
T
Y
A
V
E
P
LSG
M
S
F
V
AEN
Y
S
I
V
A
F
V
Y
D
VQTFEVY
D
V
V
H
V
K
INPQS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
51.73
9%
-101
- C8 -
1HCR
-
A:
[1-52]
-------------------------------------------------------------------------------------------
G
R
P
R
A
--
I
---
N
----
K
H
E
Q
E
Q
I
S
R
-----------
L
-----------
L
-
E
-
K
G
H
P
R
Q
Q
---
L
A
---------
I
--
I
F
-------------
G
I
G---
V
S
-
T
L
Y
-
R
Y
F
------
P
A
S
-
S
I
K
K
R
MN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
51.55
12%
-55
- C9 -
2HFT
-
?
?:
[1-106]
-------------------------SGT
T
N
T
V
A
A
Y
N
-
L
---
T
W
K
S
T
NFK
T
I
L
E
W
E
P
KPVN
Q
V
Y
--------
T
V
Q
I
---
S
------------
T
K
S
G
D
--
W
---
K
----
S
K
C
----
F
Y
-----------
T
-----------
T
-
D
-
T
-
E
C
D
L
T
---
D
E
---------
I
--
V
K
-------------
D
V
----
K
Q
-
T
Y
L
A
R
V
F
-
S
Y
P
A
G
N
V
E
-
S
T
E
P
L
Y
E
N
S
P
EFTPYLE
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
SP3
43.70
10%
-66
- C9 -
2HFT
-
?
?:
[107-218]
N
L
G
QPTIQ
S
F
E
Q
V
GT
K
V
N
V
T
V
E
D
E
R
T
LV
R
R
N
N
T
F
L
S
-
L
R--
D
V
F
G
K
---------------
D
L
--------
I
Y
T
L
---
Y
------------
Y
W
K
S
S
----------------
G
K
K
T
-----------
A
-----------
K
-
T
-
N
-
T
N
E
F
L
---
I
D
---------
V
--
D
K
-------------
G
E
----
N
-------
Y
C
-
F
S
V
Q
A
V
I
P
-
S
R
T
V
N
RKSTDSP
V
E
C
M
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
41.42
14%
-129
- C6 -
1IM3
-
US02_HCMVA
D:
[1-95]
--------------------------------
P
W
F
Q
-
I
---
E
D
N
R
C
---------------
Y
I
D
NG
K
L
F
A
-
R
G
S
I
---
V
------------
G
N
M
S
R
--
F
V
F
D
P
K
A
D
Y
G
G
V
G
E
N
L
----------------------------------
Y
V
---
H
A
---------
D
--
D
V
-------------
E
F
----
V
P
-
G
E
S
-
L
K
W
-
N
V
R
N
L
D
V
M
---
P
I
F
E
T
L
A
L
R
L
V
L
QG
D
V
I
W
L
R
C
V
P
E
L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
KKDLPFCN
V
E
L
L
P
C
VL
P
F
K
VRGHGSKL
P
N
G
C
C
E
K
M
K
K
S
T
S
C
M
C
R
F
L
M
AKERD
L
N
A
A
A
H
R
I
F
W
F
C
K
ISVPNCPKI
47
94.94
100%
-138
- C- -
M047
-
A:
[1-130]
K
K
D
L
P
F
C
N
V
E
L
L
P
C
V
L
P
F
K
V
R
G
H
G
S
K
L
P
N
G
C
C
E
K
M
K
K
S
T
S
C
M
C
R
F
L
M
A
K
E
R
D
L
N
A
A
A
H
R
I
F
W
F
C
K
I
S
V
P
N
C
P
K
I
48
93.49
100%
-163
- C- -
M048
-
A:
[1-130]
K
K
D
L
P
F
C
N
V
E
L
L
P
C
V
L
P
F
K
V
R
G
H
G
S
K
L
P
N
G
C
C
E
K
M
K
K
S
T
S
C
M
C
R
F
L
M
A
K
E
R
D
L
N
A
A
A
H
R
I
F
W
F
C
K
I
S
V
P
N
C
P
K
I