@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 792_tII_ARATH: (2014-05-15 )
SPIKVVGAKKELPFCNLDLLACVQPFLVNGHGGKLPKGCCEKMKKSTSCMCRFLTAKEQNLNAAAHRIFWFCHISVPNCPKI
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-..--..-...20-.---...------.---------...---30........40....-----------.-----------.-..50...-.--.---------.---.---.---60----.-..-.....70.---.---....----..80.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
P
I
K
V
VGAKKEL-PF--C
N
-
L
D
L
L
A
-
C
---
V
Q
P
------
F
---------
L
VN---GHGGKL
P
K
G
C
C
E
K
M
K
K
-----------
S
-----------
T
-
S
C
M
C
R
F
L-T--A---------K---E---Q---N
L
----
N
-
A
A
-
A
H
R
I
F
W
F
C
---H---ISVP----NCPKI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
78.69
27%
-157
- C6 -
1AFH
-
NLTP_MAIZE
A:
[10-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
A
P
-
C
---
I
S
-------
Y
---------
A
R
G
---
Q
-
G
S
G
P
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R-----
T
T
A
D
R
R
------
A
-
A
C
N
C
--
L
-
K
--
N
---------
A
---
A
A
G
V
S
---
G
L
----
N
A
G
N
-
A
A
S
I
P
S
K
C
---
G
---
V
S
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
76.85
24%
-142
- C6 -
1N89
1
NLT2G_WHEAT
A:
[6-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
A
V
-
C
---
A
S
A
------
I
----------
L
S
---
G
-
A
-
K
P
S
G
E
C
C
G
N
L
R
A
-----------
Q
-----------
Q
-
G
C
F
C
Q
Y
A
-
K
--
D
---------
P
---
T
Y
G
-
Q
---
Y
I
----
R
S
P
H
-
A
R
D
T
L
T
S
C
---
G
---
L
A
V
P
----
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
75.62
27%
-131
- C6 -
2ALG
2
NLTP1_PRUPE
A:
[10-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
P
-
C
---
I
P
Y
----------------
V
R
G
---
G
-
G
-
A
V
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----------
A
-
A
C
N
C
--
L
-
K
--
Q
---------
L
---
S
---
A
S
VP
G
V
----
N
P
N
N
-
A
A
A
L
P
G
K
C
---
G
---
V
S
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
72.93
29%
-142
- C6 -
1SIY
-
NLTP1_VIGRR
A:
[8-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
L
A
Q
-
C
---
I
G
-------
F
---------
L
Q
K
---
G
-
G
-
V
V
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----------
A
-
V
C
S
C
L
K
A
-
A
--
A
---------
G
---
A
---
V
R--
G
I
----
N
P
N
N
-
A
E
A
L
P
G
K
C
---
G
---
V
N
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
70.44
19%
-116
- C3 -
4B3X
3
IF2_THET8
A:
[1-363]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
K
V
R
I
Y
Q
L
A
K
E
L
-
G
M
--
E
T
-
Q
E
L
L
E
-
L
---
L
D
Q
------
M
---------
G
V
A
YK-
S
H
A
S
T
L
E
E
K
D
A
E
A
V
R
E
---------------------------
L
V
K
E
Q
-
R
--
G
---------
L
---
Q
---
E
---
K
L
----
A
-
E
E
-
E
R
R
K
------------
S
L
P
----
R
R
P
P
V
V
V
I
M
G
HVDHG
K
T
T
L
L
D
Y
L
R
K
S
R
I
AEKEGGG
I
T
Q
H
VG
A
F
E
V
K
T
PQ
G
T
V
V
F
I
D
T
PGHEAFTTIRQRGAKVAD
I
A
V
I
V
I
A
ADDGIM
P
Q
T
E
E
A
I
A
H
A
K
A
A
G
A
K
L
I
F
A
INKIDLPQAD
P
E
K
V
K
R
Q
L
M
E
R
G
F
V
P
EEYGGD
A
I
V
I
P
I
S
AKTGQG
V
Q
D
L
L
E
M
I
L
L
L
A
E
L
E
D
Y
R
A
D
PNAE
P
R
G
V
I
L
E
S
K
L
DKQA
G
I
I
A
N
M
L
V
Q
E
GTFRVG
D
Y
V
V
A
GE
A
Y
G
R
IR
A
M
M
D
ADGNQRKEAGPG
S
A
V
Q
V
L
GFQELPHAG
D
V
V
E
W
V
PD
L
E
A
A
K
E
I
A
E
E
R
K
E
E
R
K
A
R
E
E
E
E
K
A
RRPRTMAELLR
9
HHSearch
69.03
28%
-127
- C6 -
1T12
-
NLTP1_TOBAC
A:
[10-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
A
P
-
C
---
L
A
-------
Y
---------
L
R
N
---
T
-
G
--
P
L
G
R
C
C
G
G
V
K
A
-----------
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
C
T
C
--
L
-
K
--
S
---------
A
---
A
---
G
A
IS
G
I
----
N
L
G
K
-
A
A
G
L
P
S
T
C
---
G
---
V
N
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
68.02
26%
-124
- C6 -
1BWO
2
NLTP1_WHEAT
A:
[9-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
R
P
-
C
---
L
S
-------
Y
---------
V
Q
G
---
G
-
P
-
G
P
S
G
Q
C
C
D
G
V
K
N
-----------
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
C
N
C
L
K
G
-
I
--
A
---------
R
---
G
---
I
H--
N
L
----
N
E
D
N
-
A
R
S
I
P
P
K
C
---
G
---
V
N
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
66.78
16%
-110
- C6 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
M
L
-
N
H
--
C
G
-
M
Y
L
M
K
-
N
---
L
G
E
------
R
---------
S
Q
V
SPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L----------
D
-----------
E
-
K
C
M
C
P
A
I
-
M
--
M
M
L
N
EPMWIR
M
---
R
---
D
---
Q
V
----
M
-
S
M
-
A
H
N
L
P
I
E
C
---
N
---
L
M
S
Q
----
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
65.67
23%
-123
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[7-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
T
V
-
C
---
T
G
A
------
I
----------
A
G
---
G
-
A
-
R
P
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----------
Q
-
G
C
F
C
Q
F
A
-
K
--
D
---------
P
---
R
YG-
R
---
Y
V
----
N
S
P
N
-
A
R
K
A
V
S
S
C
---
G
---
I
A
L
P
----
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
64.86
15%
-141
- C6 -
2RKN
2
DIRL1_ARATH
A:
[10-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
L
N
E
-
C
---
K
P
-------
A
---------
V
S
K
---
E
N
P
T
S
P
S
Q
P
C
C
T
A
L
Q
H
-----------
A
-----------
D
F
A
C
L
C
G
Y
K
-
N
--
S
---------
P
W
L
G
S
---
F
---
G
V
----
D
P
E
L
-
A
S
A
L
P
K
Q
C
---
G
---
L
A
N
A
P---
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
63.92
15%
-125
- C6 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
-
G
M
--
S
Q
-
D
E
L
N
E
-
C
----
K
P
------
A
---------
V
S
K
---
E
N
P
T
S
P
S
Q
P
C
C
T
A
L
Q
H
A----------
D
-----------
F
-
A
C
L
C
G
Y
K
-
N
--
S
---------
P
---
W
---
L
---
G
S
F
GVD
P
-
E
L
-
A
S
A
L
P
K
Q
C
---
G
---
L
A
N
A
P---
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
63.19
18%
-109
- C5 -
2HFT
-
?
?:
[1-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
T
T
N
T
V
A
A
Y
N
L
-
T
W
K
S
T
N
-
F
K
T
I
L
-
E
---
W
E
P
KPVN
Q
V
Y
---------
T
V
Q
I
S
-
T
K
S
G
D
W
K
S
K
C
----
F
Y
-----------
T
-----------
T
-
D
T
E
C
D
L
T
-
D
--
E
---------
I
---
V
---
K
---
D
V
----
K
-
Q
T
Y
L
A
R
V
F
S
Y
P
A
G
N
V
---
E
S
T
E
P
L
Y
E
N
S
P
E
F
TPYLE
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
SP3
62.81
20%
-114
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
--
C
N
-
A
G
Q
L
T
V
C
---
T
G
A
-----------------
I
A
---
G
-
G
A
R
P
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----------
Q
-
G
C
F
C
Q
F
A
-
K
DP
R
---------
Y
---
G
---
R
---
Y
V
----
N
-
S
P
N
A
R
K
A
V
S
S
C
---
G
---
I
A
L
P
----
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
61.88
23%
-113
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
--
C
N
A
G
Q
L
T
V
-
C
---
T
G
A
------
I
---------
A
------
G
G
A
R
P
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----------
Q
-
G
C
F
C
Q
F
A
-
K
--
D
---------
P
---
R
---
Y
---
G
R
YVN-
S
-
P
N
-
A
R
K
A
V
S
S
C
---
G
---
I
A
L
P
----
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
60.30
19%
-76
* C7 *
3P4G
-
?
A:
[23-323]
HSFDHYI
G
S
A
F
DASN
N
N
V
A
V
TGNVSATLNVLAGD
D
K
V
S
I
DGNVEDVLVAANVAVLDMGTGN
D
Q
L
Y
V
A
G
D
V
L
G
K
I
D
AGTGN
D
E
I
Y
I
K
G
D
V
S
A
A
V
D
AGTGN
D
E
V
Y
I
GGNLSGDLDAGT
D
N
D
N
I
Q
I
GGDVNAALNAGTGN
D
N
L
I
I
G
H
D
V
S
G
I
V
N
MGT
D
N
D
T
V
E
V
GRTINAS
G
K
V
L
LDTGD
D
S
L
L
V
S
G
D
L
F
G
E
V
D
GGT
G
N
D
T
I
I
I
A
G
K
V
S
G
N
I
Q
GG
T
G
N
D
I
V
R
V
Q
S
Q
V
W
A
E
--
A
N
-
I
S
L
G
T
-
G
---
D
D
V
------
L
---------
I
V
E
---
H
E
----
L
H
G
T
V
A
G
N
E
G
-----------
D
-----------
D
-
S
I
Y
L
K
F
Y
-
T
--
K
---------
E
---
Q
---
Y
---
N
N
----
N
-
S
D
L
R
N
R
V
A
N
F
E
---
H
---
I
R
V
S
----
D
G
V
V
K
GSPADFADY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
50.94
12%
-129
- C7 -
1DXY
2
?
?:
[1-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
I
I
A
Y
GARVDE
I
Q
Y
F
K
Q
W
A
K
D
T
G
N
T
L
E
Y
H
T
E
F
L
-
D
E
--
N
T
-
V
E
W
A
K
-
G
---
F
D
G
------
I
---------
N
S
L
----
Q
T
T
P
Y
A
A
G
V
F
E
K
M
H
A
-----------
Y
-----------
G
-
I
K
F
L
T
I
R
-
N
--
V
---------
G
---
T
---
D
---
N
I
----
D
-
M
T
-
A
M
K
Q
Y
------
G
---
I
R
L
S
----
N
V
P
A
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
46.38
10%
-102
* C6 *
1HCR
-
A:
[1-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
P
R
A
I
------
N
-
K
H
E
Q
E
-
Q
---
I
S
R
------
L
---------
L
E
K
---
G
H
P
---
R
Q
Q
L
A
I
I
F
G
I
-----------
G
-----------
V
-
S
T
L
Y
R
Y
F
-
P
--
A
---------
S
---
S
IK-
K
---
R
M
----
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
SP3
44.95
9%
-130
- C5 -
1EHX
-
?
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDPTINPT
S
I
S
A
K
AGSF
A
D
T
K
I
T
L
T
P
N
G
N
-
T
F
--
N
G
-
I
S
E
L
Q
-
S
---
S
Q
-------
Y
---------
T
K
G
---
T
N
E
V
T
L
L
A
S
Y
L
N
T
L
P
E
-----------
N
-----------
T
-
T
K
T
L
T
F
---------------------------
D
F
----
G
-
V
G
-
T
K
N
P
K
L
T
I
---
T
---
V
L
P
K
----
D
I
P
G
L
E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
44.23
32%
-151
- C2 -
1HYK
-
A:
[1-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
---
V
R
L
------
H
---------
E
-
S
---
C
L
G
Q
Q
V
P
--
C
C
D
P
C
-------------------------
A
-
T
C
Y
C
R
F
F
-
N
--
A
------------------------------------
F
C
Y
C
---
R
KLG
T
A
M
N
----
P
C
S
R
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
40.27
17%
-84
- C5 -
1JMX
1
?
A:
[364-494]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVE
E
V
K
V
V
PA
F
S
I
A
R
I
G
E
NGAS
V
P
K
V
Q
G
R
F
E
A
E
A
W
G
K
D
ANG
Q
P
L
R
I
G
Y
L
P
A
S
W
-
K
V
--
E
P
-
F
N
E
R
A
-
V
E
D
E
D
V
K
------
F
A
G
K
M
Q
ADG
V
F
V
P
---
G
G
A
G
P
N
P
E
---
R
K
M
M
T
-----------
N
-----------
N
-
A
G
N
L
K
V
I
A
T
--
L
---------
A
---
D
---
G
---
G
Q
----
T
-
G
E
-
G
H
M
I
V
T
V
Q
---
R
---
W
N
N
P
----
P
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
S
P
I
K
V
VGAKKELPFC
N
L
D
L
L
A
C
V
Q
P
F
L
VNGHGGKL
P
K
G
C
C
E
K
M
K
K
S
T
S
C
M
C
R
F
LTAKEQN
L
N
A
A
A
H
R
I
F
W
F
C
HISVPNCPKI
35
93.35
100%
-140
- C- -
M035
-
A:
[1-127]
S
P
I
K
V
V
G
A
K
K
E
L
P
F
C
N
L
D
L
L
A
C
V
Q
P
F
L
V
N
G
H
G
G
K
L
P
K
G
C
C
E
K
M
K
K
S
T
S
C
M
C
R
F
L
T
A
K
E
Q
N
L
N
A
A
A
H
R
I
F
W
F
C
H
I
S
V
P
N
C
P
K
I
34
90.54
100%
-149
- C- -
M034
-
A:
[1-127]
S
P
I
K
V
V
G
A
K
K
E
L
P
F
C
N
L
D
L
L
A
C
V
Q
P
F
L
V
N
G
H
G
G
K
L
P
K
G
C
C
E
K
M
K
K
S
T
S
C
M
C
R
F
L
T
A
K
E
Q
N
L
N
A
A
A
H
R
I
F
W
F
C
H
I
S
V
P
N
C
P
K
I