@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 794_tII_ARATH: (2014-05-15 )
YCKESLHLCMQHLKLNDRPTWLKCCDRLIIPGPCMCKYIKDPVQWKEAYRLMASCGKTVPLNQSLKSYFKCG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------..---...-....10...------------...--.-.20-.-----------.......-30----------.-----------.--.......40------.----.------.------.-----.-----.------...50.....---.------..60--..-----.......70.-----------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------YC---
K
E
S
-
L
H
L
C
M
Q
H
LK------------LND--R-P
T
W
-
L
-----------
K
C
C
D
RLI-I-----------P-----------G--
P
C
M
C
K
Y
IK-------D----
P
------
V
------
Q
-----
W
-----
K
------
E
A
Y
R
L
M
A
SCG---K------TVP---
L
N
-----
Q
S
L
K
S
Y
FKCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
79.84
23%
-101
- C5 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
---
A
E
M
-
L
N
H
C
G
M
Y
L
M
KNLGERSQVSPR
M
R
E
--
E
-
D
H
K
-
Q
-----------
L
C
C
M
Q
L
K
N
L
-----------
D
-----------
E
--
K
C
M
C
P
A
I
M
-------
M
M
L
N
-
E
------
P
------
M
-----
W
-----
I
------
R
M
R
D
Q
V
M
S
M
A
---
H
------
N
L
P
---
I
E
-----
C
N
L
M
S
Q
-
P
C
Q
M----------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
78.91
33%
-123
- C5 -
1N89
1
NLT2G_WHEAT
A:
[6-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
L
A
V
C
A
S
A
I
L
------------
S
G
A
--
K
-
P
S
--
G
-----------
E
C
C
G
N
L
R
-
A
-----------
Q
-----------
Q
--
G
C
F
C
Q
Y
A
K
-------
D
----
P
------
T
Y
G
Q
Y
I
-
R
-----
S
-----
P
------
H
A
R
D
T
L
T
S
C
G
---
L
------
A
V
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
78.25
23%
-155
- C5 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------AID
L
C
GMS
Q
D
E
-
L
N
E
C
K
P
A
V
S
------------
K
E
N
--
P
-
T
S
P
S
Q
-----------
P
C
C
T
A
L
Q
H
A
-----------
D
-----------
F
--
A
C
L
C
G
Y
K
N
-------
S
----
P
------
W
------
L
-----
G
-----
S
F
GVD
P
E
L
A
S
A
L
P
K
Q
C
G
---
L
------
A
N
A
---
P
T
-------------
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
73.05
24%
-104
- C5 -
2ALG
2
NLTP1_PRUPE
A:
[10-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
L
A
P
C
I
P
Y
V
R
------------
G
G
G
--
A
-
V
P
--
P
-----------
A
C
C
N
G
I
R
-
N
-----------
V
N
N
L
A
RT
T
P
D
R
Q
A
--
A
C
N
C
--
L
K
-------
Q
----
L
------
S
A
S
VPGV
N
-----
P
-----
N
------
N
A
A
A
L
P
G
K
C
G
---
V
------
S
I
P
---
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
71.21
32%
-58
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
N--
A
G
Q
-
L
T
V
C
T
G
A
I
A
------------
G
G
A
--
R
-
P
T
--
A
-----------
A
C
C
S
S
L
R
-
A
-----------
Q
-----------
Q
--
G
C
F
C
Q
F
A
K
-------
D
----
P
------
R
------
Y
-----
G
-----
R
YVNSP-
N
A
R
K
A
V
S
S
C
G
---
I
------
A
L
P
-----------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
71.08
26%
-120
- C5 -
1T12
-
NLTP1_TOBAC
A:
[10-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
L
A
P
C
L
A
Y
L
R
------------
N
T
G
----
P
L
G
-------------
R
C
C
G
G
V
K
-
A
-----------
L
V
N
S
A
RT
T
E
D
R
Q
I
--
A
C
T
C
--
L
K
-------
S
----
A
------
A
G
A
ISGI
N
-----
L
-----
G
------
K
A
A
G
L
P
S
T
C
G
---
V
------
N
I
P
---
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
69.57
25%
-121
- C5 -
2RKN
2
DIRL1_ARATH
A:
[10-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
-
L
N
E
C
K
P
A
V
S
------------
K
E
N
PT
S
-
P
S
--
Q
-----------
P
C
C
T
A
L
Q
-
H
-----------
A
-----------
D
F
-
A
C
L
C
G
Y
K
N
-------
S
----
P
------
W
L
G
S
F
GV
D
-----
P
-----
E
------
L
A
S
A
L
P
K
Q
C
G
---
L
------
A
N
A
---
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
69.52
20%
-107
- C5 -
1AFH
-
NLTP_MAIZE
A:
[10-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
A
P
C
I
S
Y
A
R
------------
G
Q
G
--
S
G
P
S
--
A
-----------
G
C
C
S
G
V
R
-
S
-----------
L
N
N
A
A
RT
T
A
D
R
R
A
--
A
C
N
C
--
L
K
-------
N
----
A
A
A
G
VSG
L
------
N
-----
A
-----
G
------
N
A
A
S
I
P
S
K
C
G
---
V
------
S
I
P
---
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
68.33
14%
-137
- C5 -
2QW6
-
?
A:
[241-328]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
D
V
-
I
S
A
F
Q
K
S
I
R
------------
G
S
D
--
V
-
D
A
A
-
L
-----------
H
Y
L
A
R
L
V
-
E
-----------
A
-----------
G
D
L
A
S
I
C
R
R
L
M
V
I
G
Y
E
DI
N
----
P
------
A
------
A
-----
A
-----
A
------
R
T
V
N
A
V
L
A
A
E
---
K
L
GLPEA
R
I
P
---
L
A
-----
D
V
V
V
D
L
C
L
S
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
64.93
33%
-61
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[7-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
L
T
V
C
T
G
A
I
A
------------
G
G
A
--
R
-
P
T
--
A
-----------
A
C
C
S
S
L
R
-
A
-----------
Q
-----------
Q
--
G
C
F
C
Q
F
A
K
-------
D
----
P
------
R
------
Y
GRYVN
S
-----
P
------
N
A
R
K
A
V
S
S
C
G
---
I
------
A
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
64.34
21%
-69
- C5 -
1SIY
-
NLTP1_VIGRR
A:
[8-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
-
L
A
Q
C
I
G
F
L
Q
------------
K
G
G
--
V
-
V
P
--
P
-----------
S
C
C
T
G
V
K
-
N
I
L
NSSRTTADR
R
-----------
A
--
V
C
S
C
L
K
A
A
-------
A
G
A
VR
G
------
I
------
N
-----
P
-----
N
------
N
A
E
A
L
P
G
K
C
G
---
V
------
N
I
P
---
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
SP3
63.63
29%
-72
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
---
N
A
G
Q
L
T
V
C
T
G
A
I
A
------------
G
G
A
--
R
-
P
T
--
A
-----------
A
C
C
S
S
L
R
-
A
-----------
Q
-----------
Q
--
G
C
F
C
Q
F
A
K
-------
D
----
P
RYGRY-
V
------
N
-----
S
-----
P
------
N
A
R
K
A
V
S
S
C
G
---
I
------
A
L
P
-----------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
57.84
20%
-51
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[9-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
V
R
P
C
L
S
Y
V
Q
------------
G
G
P
--
G
-
P
S
--
G
-----------
Q
C
C
D
G
V
K
-
N
-----------
L
H
N
Q
ARS
Q
S
D
R
Q
S
--
A
C
N
C
L
K
G
I
-------
A
----
R
G
IHN--
L
------
N
-----
E
-----
D
------
N
A
R
S
I
P
P
K
C
G
---
V
------
N
L
P
---
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
56.94
12%
-127
- C5 -
2B7E
-
A:
[1-59]
----------------------------------------------------------------------------------------------------------------------------------------------------------GAM
E
A
---
E
K
E
-
F
I
T
M
L
K
E
N
Q
------------
V
D
S
--
T
-
W
S
F
-
S
-----------
R
I
I
S
E
L
G
-
T
-----------
R
-----------
D
--
P
R
Y
W
M
V
D
D
-------
D
----
P
------
L
------
W
-----
K
-----
K
------
E
M
F
E
K
Y
L
S
N
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
56.86
19%
-100
- C5 -
4FDT
1
?
A:
[21-425]
MQT
K
I
Q
K
Y
A
GTAMPYPNRTDGMTPF
Y
I
N
H
L
G
R
H
GARFPTSR
K
A
L
D
K
V
E
K
V
L
V
S
A
Q
Q
E
NGLT
S
E
G
M
A
L
L
S
M
I
R
R
L
S
R
L
F
DGQWGKLS
K
L
G
E
T
E
Q
E
G
I
A
G
R
M
I
R
N
YPQLFSNS
A
K
I
E
A
I
A
T
YV
P
R
S
I
N
S
M
D
A
F
L
S
C
M
I
R
H
NPA
L
Q
V
Q
R
S
E
G
KQYNHILR
F
F
---
D
L
N
-
K
S
Y
V
N
Y
K
E
K
------------
G
D
W
--
L
-
P
I
Y
-
K
-----------
A
F
V
H
K
K
I
-
S
-----------
P
-----------
V
--
P
I
M
K
K
F
L
L
-------
N
----
P
------
E
------
Q
-----
Y
L
D
K
E
A
E
------
E
F
V
M
A
L
F
S
V
A
---
A
------
I
L
P
DTS
I
P
-----
L
N
L
E
D
L
F
T
L
D
E
W
H
R
Y
W
Q
T
Q
N
L
R
Q
Y
M
S
KSSAPVGKM
L
P
V
A
I
A
W
P
L
L
S
E
F
I
R
S
A
Q
E
V
I
S
GKSDYQ
A
N
F
R
F
A
H
A
E
T
V
I
P
F
V
S
L
M
GIEKTDVQVCRPDSVSVYWKDYEISPMA
A
N
V
Q
W
L
F
Y
R
D
RDQ
R
I
W
V
K
I
L
L
NE
E
A
A
A
L
PISTACFPYYS
W
E
K
T
R
I
F
F
N
Q
R
I
E
M
A
K
K
T
L
S
V
F
N
6
Fugue
55.62
19%
-71
- C5 -
4K0D
-
?
A:
[5-147]
---------------------------------------------------------------------------------------------------------------------------------------------I
A
A
S
A
D
A
Q
L
E
L
I
G
P
R
A
A
A
---
A
A
S
-
L
E
S
A
V
L
H
V
S
------------
L
T
A
--
R
-
A
Y
A
-
L
TPE
P
A
R
M
D
A
L
Q
A
A
L
R
R
L
E
-
G
-----------
A
-----------
A
--
A
R
F
A
A
L
P
K
-------
S
----
P
------
E
------
G
-----
A
-----
A
------
L
S
G
R
I
L
A
A
V
P
---
P
------
F
E
K
---
A
A
-----
V
A
L
G
T
A
V
A
T
G
GD
D
S
A
I
R
A
R
E
A
T
L
P
P
M
R
E
E
L
L
S
L
L
R
T
F
G
A
L
Q
Q
A
H
D
A
G
A
S
H
T
I
L
A---------------------------------------------------------------------------------------------------------------------
9
Fugue
50.09
17%
-92
- C5 -
2KL8
-
?
A:
[1-85]
----------------------------------------------------------------------------------------------------------------------------------------------------M
E
M
D
I
R
F
R
G
D
D
---
L
E
A
-
F
E
K
A
L
K
E
M
I
------------
R
Q
A
--
R
-
K
---
F
-----------
A
G
T
V
T
Y
T
-
L
-----------
D
-----------
G
--
N
D
L
E
I
R
I
T
GVP
E
Q
V
-
R
----
K
------
E
------
L
-----
A
-----
K
------
E
A
E
R
L
A
K
E
F
N
---
I
------
T
V
T
---
Y
T
-----
I
R
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
75
SP3
45.71
9%
-95
- C5 -
1HCR
-
A:
[1-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
RP
R
A
I
------------
N
----
K
------
H
------
E
-----
Q
-----
E
------
Q
I
S
R
L
L
E
K
-
G
HP
R
Q
------
Q
L
A
---
I
I
F
GIG
V
S
T
L
Y
R
Y
F
P
A
S
SIKKRMN----------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
38.41
33%
-50
- C5 -
4C1L
-
?
A:
[24-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
I
-
I
-----------
A
-----------
G
--
P
C
S
---
I
E
-------
S
----
R
------
D
------
Q
-----
I
-----
M
------
K
V
A
E
F
L
A
E
V
G
---
I
------
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
32.31
55%
-131
- C1 -
1TER
1
TERT_APIME
A:
[5-15]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
N
R
I
I
-
I
-----------
P
-----------
H
--
M
C
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
YC
K
E
S
L
H
L
C
M
Q
H
LKLNDRP
T
W
L
K
C
C
D
RLIIPG
P
C
M
C
K
Y
IKD
P
V
Q
W
K
E
A
Y
R
L
M
A
SCGKTVP
L
N
Q
S
L
K
S
Y
FKCG
83
96.37
100%
-146
- C- -
M083
-
A:
[1-106]
Y
C
K
E
S
L
H
L
C
M
Q
H
L
K
L
N
D
R
P
T
W
L
K
C
C
D
R
L
I
I
P
G
P
C
M
C
K
Y
I
K
D
P
V
Q
W
K
E
A
Y
R
L
M
A
S
C
G
K
T
V
P
L
N
Q
S
L
K
S
Y
F
K
C
G
84
91.21
100%
-150
- C- -
M084
-
A:
[1-125]
Y
C
K
E
S
L
H
L
C
M
Q
H
L
K
L
N
D
R
P
T
W
L
K
C
C
D
R
L
I
I
P
G
P
C
M
C
K
Y
I
K
D
P
V
Q
W
K
E
A
Y
R
L
M
A
S
C
G
K
T
V
P
L
N
Q
S
L
K
S
Y
F
K
C
G