@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 795_tII_ARATH: (2014-05-15 )
ISGKEENATCVMANLQICKSAVTTGNPHSKECCEKLKEQQSCFCEYLKDPLVVPYITYAKIILAACGLSFPNC
Atome Classification :
(20 SA)
---------------------------------------------------------.........10----.--..--..---.------...20.--------------.--.-------------..--.-----.--.-----------30.......-----------.---------40........----.--------50--------------.....--------..----------.---.60........70-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------ISGKEEN
A
T
C
-----
V
--
M
A
--
N
L
---
Q
------
I
C
K
S
AV--------------T--T-------------GN--P-----
H
--
S
-----------
K
E
C
C
E
K
L
K
E
-----------
Q
---------
Q
-
S
C
F
C
E
Y
L
K----D--------P---------------LV
V
P
Y
--------
I
T
----------
Y
---
A
K
I
I
L
A
A
CGLSFP-------NC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
92.99
45%
-131
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
------
V
C
A
S
A
I
--------------
L
--
S
-------------
G
A
--
K
-----
P
--
S
-----------
G
E
C
C
G
N
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
Y
A
K
----
D
--------
P
---------------
T
Y
G
Q
Y
--------
I
R
----------
S
P
H
-
A
R
D
T
L
T
S
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
83.45
35%
-124
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
------
V
C
T
G
A
I
--------------
A
--
G
-------------
G
A
--
R
-----
P
--
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
F
A
K
----
D
--------
P
---------------
R
Y
G
R
Y
--------
V
N
----------
S
PN-
A
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
82.72
34%
-126
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
------
V
C
T
G
A
I
--------------
A
--
G
-------------
G
A
--
R
-----
P
--
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
F
A
K
----
D
--------
P
---------------
R
Y
G
R
Y
--------
V
N
SP--------
N
---
A
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
82.08
31%
-124
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
------
V
C
T
G
A
I
--------------
A
--
G
-------------
G
A
--
R
-----
P
--
T
-----------
A
A
C
C
S
S
L
R
A
-----------
Q
---------
Q
-
G
C
F
C
Q
F
A
K
----
D
--------
P
---------------
R
Y
G
R
Y
--------
V
N
----------
S
PN-
A
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
80.86
31%
-149
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
---------------------------------------------------------------------------
Q
D
--
E
L
---
N
------
E
C
K
P
A
V
--------------
S
--
K
-------------
E
N
PT
S
-----
P
--
S
-----------
Q
P
C
C
T
A
L
Q
H
-----------
A
---------
D
F
A
C
L
C
G
Y
K
N
----
S
--------
P
---------------
W
L
G
S
F
G-------
V
D
----------
P
E
L
-
A
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
78.00
28%
-117
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------
A
I
D
L
C
G
M
-----
S
--
Q
D
--
E
L
---
N
------
E
C
K
P
A
V
--------------
S
--
K
-------------
E
N
--
P
-----
T
SP
S
-----------
Q
P
C
C
T
A
L
Q
H
A----------
D
---------
F
-
A
C
L
C
G
Y
K
N
----
S
--------
P
---------------
W
L
G
S
F
GVD-----
P
E
----------
L
---
A
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
75.25
30%
-130
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
---
A
------
P
C
L
A
Y
L
--------------
R
--
N
-------------
T
G
--------
P
--
L
-----------
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
---------
I
-
A
C
T
C
--
L
K
----
S
--------
A
---------------
A
-
G
A
I
SG------
I
N
----------
L
G
K
-
A
A
G
L
P
S
T
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
73.40
30%
-131
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
T
C
-----
G
--
Q
V
S
S
S
L
---
A
------
P
C
I
P
Y
V
--------------
R
--
G
-------------
G
G
--
A
-----
V
--
P
-----------
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
---------
A
-
A
C
N
C
--
L
K
----
Q
--------
L
---------------
S
-
A
S
V
PG------
V
N
----------
P
N
N
-
A
A
A
L
P
G
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
72.28
26%
-143
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------
I
S
C
-----
G
--
Q
V
A
S
A
I
---
A
------
P
C
I
S
Y
A
--------------
R
--
G
-------------
Q
G
--
S
G----
P
--
S
-----------
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
---------
A
-
A
C
N
C
--
L
K
----
N
--------
A
---------------
A
-
A
G
V
SG------
L
N
----------
A
G
N
-
A
A
S
I
P
S
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
71.73
17%
-110
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------
P
Y
G
R
G
R
T
E
S
G
-----
C
--
Y
Q
--
Q
M
---
E
E
A
EML
N
H
C
G
M
Y
L
--------------
M
--
K
NLGERSQVSPR
M
R
E
E
--
D
-----
H
--
K
-----------
Q
L
C
C
M
Q
L
K
N
L----------
D
---------
E
-
K
C
M
C
P
A
I
M
----
M
M
L
N
EPMWI
R
---------------
M
R
D
Q
V
--------
M
S
----------
M
---
A
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
70.74
28%
-130
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
S
C
-----
P
------
D
L
---
S
------
I
C
L
N
I
L
GG------------
S
--
L
-------------
G
T
-----------
V
-----------
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
----
I
-
V
C
L
C
I
Q
L
R
----
A
-------------------------
L
G
I
---------
L
N
----------
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
68.13
20%
-133
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
------
H
C
G
M
Y
L
--------------
M
KN
L
-------------
G
E
--
R
-----
S
--
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L----------
D
---------
E
-
K
C
M
C
P
A
I
M
M
M
L
N
E
--------
P
---------------
M
W
I
R
M
R
D
Q
V
----
M
S
----------
M
---
A
H
N
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
67.09
25%
-93
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------
Q
G
--
N
L
---
A
------
Q
C
I
G
F
L
--------------
Q
--
K
-------------
G
G
--
V
-----
V
--
P
-----------
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
---------
A
-
V
C
S
C
L
K
A
A
----
A
--------
G
---------------
A
V
R
-
G
--------
I
N
----------
P
N
N
-
A
E
A
L
P
G
K
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
61.61
16%
-94
- C3 -
1IGN
-
RAP1_YEAST
A:
[94-242]
------------------------------------------------------
K
R
K
F
S
A
D
E
D
Y
T
L
A
-----
I
--
A
V
--
K
K
---
Q
------
F
Y
R
D
L
F
QIDPDTGRSLIRTQ
S
--
R
-------------
R
G
--
P
-----
I
--
A
-----------
R
E
F
F
K
H
F
A
E
-----------
E
H
AAHT
E
N
A
W
R
-
D
R
F
R
K
F
L
L
----
A
--------
Y
---------------
G
I
D
D
Y
--------
I
S
----------
Y
---
Y
E
A
E
E
P
M
K
N
L
T
P
T
-------
P
G
NYNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
60.76
27%
-91
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------
D
S
--
L
V
---
R
------
P
C
L
S
Y
V
--------------
Q
--
G
-------------
G
P
--
G
-----
P
--
S
-----------
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
---------
S
-
A
C
N
C
L
K
G
I
----
A
--------
R
---------------
G
I
H
-
N
--------
L
N
----------
E
D
N
-
A
R
S
I
P
P
K
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
59.85
19%
-98
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
------
P
C
I
S
Y
A
--------------
R
--
G
-------------
Q
G
--
S
G----
P
--
S
-----------
A
G
C
C
S
G
V
R
S
-----------
L
---------
N
-
N
A
----
A
R
----
T
--------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
S
G
L
N-------
A
G
----------
N
---
A
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
52.24
14%
-88
- C3 -
2LSE
-
?
A:
[1-101]
------------------------------------------------------------
M
Q
E
E
R
K
K
-----
L
--
L
E
--
K
L
---
E
------
K
I
L
D
E
V
--------------
T
--
D
-------------
G
A
--
P
DEA
R
E
R
--
I
-----------
E
K
L
A
K
D
V
K
D
-----------
E
LEEGD----
A
-
K
N
M
I
E
K
F
R
----
D
--------
E
---------------
M
E
Q
M
Y
--------
K
D
----------
A
---
P
N
A
V
M
E
Q
L
L
E
E
I
E
-------
K
L
L
K
K
A
GSLVPRGSYLEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
47.43
15%
-69
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
R
G
S
A
L
-----
S
--
D
T
--
E
R
---
A
------
Q
-
L
D
V
M
--------------
K
--
L
-------------
L
N
--
V
-----
S
--
L
-----------
H
E
M
S
R
K
I
S
R
-----------
S
---------
R
-
H
C
I
R
V
Y
L
K
----
D
--------
P
V--------------
S
Y
G
T
S
--------
K
R
APRRKALS
V
R
D
---
E
R
N
V
I
R
A
A
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
43.15
15%
-76
- C2 -
2SIC
-
SSI_STRAO
I:
[1-107]
----------------------------------------------YAPSALVLTVG
K
G
V
S
A
T
T
A
A
P
-----
E
--
R
A
--
V
T
---
L
------
T
C
A
P
G
P
--------------
S
--
G
-------------
T
H
--
P
-----
A
--
A
-----------
G
S
A
C
A
D
L
A
A
VGGDLNALTR-
G
---------
E
-
D
V
M
C
P
M
V
Y
----
D
--------
P
---------------
V
L
L
T
V
DGVWQGKR
V
S
----------
Y
---
E
R
V
F
S
N
E
C
E
M
N
A
H
-------
G
S
SVFAF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
37.80
16%
-90
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
------
V
A
L
R
A
P
--------------
V
--
T
-------------
A
G
--
Q
-----
L
--
A
-----------
V
E
N
G
H
Y
V
V
E
-----------
T
---------
L
-
A
R
A
C
D
G
C
L
----
N
--------
G
---------------
E
F
A
A
L
--------
I
T
----------
G
P
V-
H
K
G
V
I
N
D
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ISGKEEN
A
T
C
V
M
A
N
L
Q
I
C
K
S
AVTTGNP
H
S
K
E
C
C
E
K
L
K
E
Q
Q
S
C
F
C
E
Y
L
KDPLV
V
P
Y
I
T
Y
A
K
I
I
L
A
A
CGLSFPNC
44
95.07
100%
-124
- C- -
M044
-
A:
[1-120]
I
S
G
K
E
E
N
A
T
C
V
M
A
N
L
Q
I
C
K
S
A
V
T
T
G
N
P
H
S
K
E
C
C
E
K
L
K
E
Q
Q
S
C
F
C
E
Y
L
K
D
P
L
V
V
P
Y
I
T
Y
A
K
I
I
L
A
A
C
G
L
S
F
P
N
C
45
94.73
100%
-135
- C- -
M045
-
A:
[1-120]
I
S
G
K
E
E
N
A
T
C
V
M
A
N
L
Q
I
C
K
S
A
V
T
T
G
N
P
H
S
K
E
C
C
E
K
L
K
E
Q
Q
S
C
F
C
E
Y
L
K
D
P
L
V
V
P
Y
I
T
Y
A
K
I
I
L
A
A
C
G
L
S
F
P
N
C
46
50.87
100%
-22
- C- -
M046
-
A:
[4-104]
I
S
G
K
E
E
N
A
T
C
V
M
A
N
L
Q
I
C
K
S
A
V
T
T
G
N
P
H
S
K
E
C
C
E
K
L
K
E
Q
Q
S
C
F
C
E
Y
L
K
D
P
L
V
V
P
Y
I
T
Y
A
K
I
I
L
A
A
C
G
L
S
F
P
N
C