@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-15 )
QPVCPLNRSDLGICVNVLGLISLTTSNVARCCSILAGLNNTPLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------......-.--..10........20..---------------..-------------------.--------...30.....-...40----.-----.-----.......50...-.....60-------.------.......70.........----80-------.----....-...-----------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------QPVCPL-N--RSDLGICVNVLGLISL---------------TT-------------------S--------NVARCCSILA-GLNN-----T-----P-----LVSVCACEAVRL-NILNLLG-------I------TVNLNLRL-NGLLGLCRL----PV-------Q----PGFN-CLL-----------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
86.81
43%
-212
- C2 -
1HYP
-
HPSE_SOYBN
A:
[6-79]
----------------------------------------------------------------------------------------------------------------------
P
S
C
P
-------
D
L
S
I
C
L
N
I
L
G
G
-
S
L
---------------
G
T
-----------------------------
V
D
D
C
C
A
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-
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L
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D
-----
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-----
E
------
A
I
V
C
L
C
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R
A
---
L
---
G
-------
I
-------
L
N
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N
R
N
L
-
Q
L
I
L
N
S
C
G
R
----
S
Y
-------
P
----
S
N
A
T
-
C
P
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
81.61
32%
-209
- C2 -
1HYP
-
?
?:
[6-80]
----------------------------------------------------------------------------------------------------------------------
P
S
C
P
-------
D
L
S
I
C
L
N
I
L
G
G
S
------------------
L
-------------------
G
--------
T
V
D
D
C
C
A
L
I
G
-
G
L
G
D
-----------
I
-----
E
A
I
V
C
L
C
I
Q
L
R
A
------
L
G
-------
I
-------
L
N
L
N
R
N
L
-
Q
L
I
L
N
S
C
G
R
----
S
Y
-------
P
----
S
N
A
T
-
C
P
R
T----------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
74.58
23%
-143
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
-
Q
V
D
R
V
N
L
K
P
C
E
Q
H
I
M
Q
R
I
M
GEQEQYDSYDIRSTR
S
S
-------------------
D
--------
Q
Q
Q
R
C
C
D
E
L
N
-
E
M
E
N
-----
T
-----
Q
--------
G
C
M
C
E
A
L
Q
Q
-
I
M
E
N
Q
C
D
-------
R
LQDRQM
V
Q
Q
F
K
R
E
L
-
M
S
L
P
Q
Q
C
N
F
----
R
A
PQRCDLD
V
----
S
G
G
R
-
C
S
------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
71.62
18%
-143
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
-
E
VQ
R
K
D
L
S
S
C
E
R
Y
L
R
Q
S
S
S
---------------
R
R
S
T
GEEVLRMPGDENQQQES
Q
--------
Q
L
Q
Q
C
C
N
Q
V
K
-
Q
V
R
D
-----
E
---------------
C
Q
C
E
A
I
K
Y
-
I
A
E
D
Q
I
Q
Q
G
QLHGE
E
------
S
E
R
V
A
Q
R
A
-
G
E
I
V
S
S
C
G
V
----
R
C
-------
M
----
R
Q
T
R
-
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
69.25
23%
-160
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[3-89]
-----------------------------------------------------------------------------------------------------------------------
T
C
G
Q
-
V
--
S
S
S
L
A
P
C
I
P
Y
V
R
G
------------------
G
G
-------------------
A
--------
V
P
P
A
C
C
N
G
I
R
-
N
V
N
N
-----
L
A
RT
T
P
D
-----
R
Q
A
A
C
N
C
--
L
K
Q
-
L
S
A
S
-
V
P
--------------
G
V
N
P
N
N
A
A
--
A
L
P
G
K
C
G
V
----
S
I
-------
P
YKIS
A
S
T
N
-
C
A
------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
67.69
25%
-178
* C2 *
1T12
-
NLTP1_TOBAC
A:
[3-88]
-----------------------------------------------------------------------------------------------------------------------
T
C
G
Q
-
V
--
T
S
N
L
A
P
C
L
A
Y
L
R
N
T
------------------
G
----------------------------
P
L
G
R
C
C
G
G
V
K
-
A
L
V
N
-----
S
-----
A
RT
T
E
D
R
Q
I
A
C
T
C
--
L
K
S
-
A
A
G
A
-
I
S
--------------
G
I
N
L
G
K
A
A
--
G
L
P
S
T
C
G
V
----
N
I
-------
P
YKIS
P
S
T
D
-
C
S
------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
62.90
19%
-157
- C2 -
1AFH
-
NLTP_MAIZE
A:
[3-90]
-----------------------------------------------------------------------------------------------------------------------
S
C
G
Q
-
V
--
A
S
A
I
A
P
C
I
S
Y
A
R
G
Q
-----------------
G
S
-------------------
G
--------
P
S
A
G
C
C
S
G
V
R
-
S
L
N
N
-----
A
-----
A
RT
T
A
D
R
R
A
A
C
N
C
--
L
K
N
-
A
A
A
G
-
V
S
--------------
G
L
N
A
G
N
A
A
--
S
I
P
S
K
C
G
V
----
S
I
-------
P
Y
T
I
S
T
S
T
D
-
C
S
------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
62.68
21%
-128
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
-
S
--
Q
D
E
L
N
E
C
K
P
A
V
S
K
E
N
P
---------------
T
S
-------------------
P
--------
S
-
Q
P
C
C
T
A
L
Q
-
H
A
D
--------------------
F
A
C
L
C
G
Y
K
N
S
-
P
W
L
G
S
F
G
-------
V
------
D
---
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
----
A
N
-------
A
----
P
--
T
-
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
60.94
16%
-131
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
-
V
--
A
S
A
I
A
P
C
I
S
Y
A
R
G
--
Q
---------------
G
S
-------------------
G
--------
P
S
A
G
C
C
S
G
V
R
-
S
L
N
N
-----
A
ART--
T
-----
A
D
R
R
A
A
C
N
C
L
K
N
-
A
A
A
G
V
S
G
-------
L
------
N
A
G
---
N
A
-
A
S
I
P
S
K
C
G
V
----
S
I
-------
P
YTIS
T
S
T
D
-
C
S
R
VN---------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
60.09
20%
-118
- C2 -
2ILR
-
FANCE_HUMAN
A:
[275-535]
-------------------------------------------------------------------------------------AESLELP
K
A
I
Q
D
Q
L
P
R
L
Q
Q
L
L
K
T
L
E
EAPP
V
E
L
Q
L
L
H
E
C
-
S
--
P
S
Q
M
D
L
L
C
A
Q
L
Q
L
P
Q
L
---------------
S
D
-------------------
L
--------
G
L
L
R
L
C
T
W
L
L
-
A
L
S
P
-----
D
-----
L
-----
S
L
S
N
A
T
V
L
T
R
S
L
-
F
L
G
R
I
L
S
-------
L
------
T
S
S
A
S
R
L
L
T
T
A
L
T
S
F
A
A
K
----
Y
T
-------
Y
----
P
V
C
S
-
A
L
L
D
P
V
L
Q
APGTG
P
A
Q
T
E
L
L
C
C
L
V
K
MESLE
P
D
A
Q
V
L
M
L
G
Q
I
L
E
LPWK
E
E
T
F
L
V
L
Q
S
L
L
E
R
Q
V
E
M
T
P
E
K
F
S
V
L
M
E
K
L
C
KTTS
M
A
Y
A
K
L
M
L
T
V
M
T
KYQANIT
E
T
Q
R
L
G
L
A
M
A
L
EPNTTFL
R
K
S
L
K
A
A
L
K
H
L
G----------------------------
23
HHSearch
59.86
23%
-145
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-77]
---------------------------------------------------------------------------------------------------------------------
I
D
L
C
G
M
-
S
--
Q
D
E
L
N
E
C
K
P
A
V
S
K
------------------
E
N
PT-----------------
S
--------
P
S
Q
P
C
C
T
A
L
Q
-
H
A
-
D
-----
F
-----
A
---------
C
L
C
G
Y
K
N
S
-
P
W
L
G
S
---------
F
------
G
V
D
P
E
L
A
--
S
A
L
P
K
Q
C
G
L
----
A
N
-------
A
----
P
--
T
-
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
57.17
22%
-170
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[2-88]
-----------------------------------------------------------------------------------------------------------------------
T
C
G
Q
-
V
--
Q
G
N
L
A
Q
C
I
G
F
L
Q
K
G
------------------
G
-------------------
V
--------
V
P
P
S
C
C
T
G
V
K
-
N
I
L
N
SSRTT
A
-----
D
-----
R
R
A
V
C
S
C
--
L
K
A
-
A
A
G
A
V
-
R
--------------
G
I
N
P
N
N
A
E
--
A
L
P
G
K
C
G
V
----
N
I
-------
P
YKIS
T
S
T
N
-
C
N
------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
50.09
17%
-129
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[3-88]
------------------------------------------------------------------------------------------------------------------------
C
G
H
-
V
--
D
S
L
V
R
P
C
L
S
Y
V
Q
G
G
------------------
P
-------------------
G
--------
P
S
G
Q
C
C
D
G
V
K
-
N
L
H
N
-----
Q
ARS
Q
S
D
-----
R
Q
S
A
C
N
C
L
K
G
I
A
-
R
G
I
--
H
---------------
N
L
N
E
D
N
A
--
R
S
I
P
P
K
C
G
V
----
N
L
-------
P
Y
T
I
S
L
N
I
D
-
C
S
------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
48.63
18%
-91
- C2 -
3K9I
-
?
A:
[54-163]
------------------------------------------------------------------------------------------------------------AQA
V
P
Y
Y
E
K
A
I
A
S
G
L
-
Q
--
G
K
D
L
A
E
C
Y
L
G
L
G
S
T
F
R
---------------
T
L
-------------------
G
--------
E
Y
R
K
A
E
A
V
L
A
N
G
V
K
Q
-----
F
-----
P
-------
N
H
Q
A
L
R
V
F
Y
A
M
V
L
Y
N
L
G
R
-------
Y
------
E
Q
G
V
E
L
L
L
-
K
I
I
A
E
T
S
D
D
----
E
T
-------
I
----
Q
S
Y
K
-
Q
A
I
L
F
Y
A
DKLDETWK-----------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
47.62
17%
-118
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------
A
G
C
---
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
G
------------------
G
A
-------------------
R
--------
P
T
A
A
C
C
S
S
L
R
-
A
---------------------
Q
Q
G
C
F
C
Q
F
A
K
D
-
P
R
---
Y
G
-------
R
------
Y
V
N
S
P
N
A
--
R
K
A
V
S
S
C
G
I
----
A
L
-------
P
-------
T
-
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
46.47
19%
-169
- C2 -
1N89
1
NLT2G_WHEAT
A:
[3-65]
----------------------------------------------------------------------------------------------------------------------------
Q
--
A
S
Q
L
A
V
C
A
S
A
I
L
S
------------------
G
A
-------------------
K
--------
P
S
G
E
C
C
G
N
L
R
-
A
Q
--------------------
Q
-
G
C
F
C
Q
Y
A
K
D
-
P
T
Y
G
----------
Q
------
Y
I
R
S
P
H
A
R
-
D
-
T
L
T
S
C
G
L
----
A
V
-------
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
43.52
7%
-171
- C2 -
1PK1
-
SCM_DROME
B:
[11-80]
-------------------------------------------------------------------------------------------------------------------------
R
S
-
Q
--
P
I
D
W
T
-
I
E
E
V
I
Q
Y
I
E
S
---------------
N
D
-------------------
N
--------
S
L
A
V
H
G
D
L
F
R
-
K
-
H
E
-----
I
-----
D
-----
G
K
A
L
L
R
L
N
--
S
E
-
R
M
M
K
Y
M
G
-------
L
------
K
L
G
P
A
L
K
I
-
C
N
L
V
N
K
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
42.15
19%
-131
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[5-66]
-------------------------------------------------------------------------------------------------------------------------------
A
G
Q
L
T
V
C
T
G
A
I
A
G
------------------
G
A
-------------------
R
--------
P
T
A
A
C
C
S
S
L
R
-
A
Q
---------------------
Q
G
C
F
C
Q
F
A
K
D
-
P
R
Y
G
----------
R
------
Y
V
N
S
P
N
A
R
-
K
-
A
V
S
S
C
G
I
----
A
L
-------
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
SP3
32.90
8%
-101
- C2 -
1N6M
1
NCD_DROME
A:
[1-380]
M
H
A
A
L
S
T
E
V
V
H
L
R
Q
R
T
E
E
L
L
R
C
N
E
Q
Q
A
A
E
L
E
T
C
K
E
Q
L
F
Q
S
N
M
E
R
K
E
L
H
N
T
V
M
D
L
R
GN
I
R
V
F
C
R
IRPPLESEENRMC
C
T
W
T
Y
HDES
T
V
E
L
Q
S
IDAQMG
Q
Q
I
F
S
F
D
Q
V
F
H
PLSS
Q
S
D
I
F
E
M
V
S
P
L
I
Q
--
S
A
L
D
G
Y
N
I
C
I
---
F
A
Y
---------------
G
Q
-------------------
T
--------
G
S
G
K
T
Y
T
M
-
D
-
G
V
P
E
-----
S
-----
V
-----
G
V
I
P
R
T
V
D
L
L
F
D
-
S
I
R
G
Y
R
N
-------
L
------
G
W
E
Y
E
I
K
A
-
T
F
L
E
I
Y
N
E
V
L
Y
D
L
L
S
-------
N
----
E
Q
K
D
-
M
E
I
R
M
A
KNNKN
D
I
Y
V
S
NITEETVLD
P
N
H
L
R
H
L
M
H
T
A
K
M
N
RASSR
S
H
A
V
T
K
L
E
L
I
G
R
H
A
EKQ
E
I
S
V
G
S
I
N
L
V
DLAGS
E
S
P
K
TET
K
N
I
K
R
S
L
S
E
L
T
N
V
I
L
A
L
L
Q
KQDHIPYRNS
K
L
T
H
L
L
M
PSLGGN
S
K
T
L
M
F
I
N
V
S
PFQDC
F
Q
E
S
V
K
S
L
R
F
A
A
S
V
N
S
CK
20
SP3
18.12
6%
-69
- C2 -
1J9L
-
SURE_THEMA
A:
[1-247]
---------------------M
R
I
L
V
T
N
DDGIQS
K
G
I
I
V
L
A
E
L
L
S
E
EHE
V
F
V
V
A
P
DKERSATGHSITIH
V
P
L
W
M
K
K
V
F
ISER
V
V
A
Y
S
T
TGT
P
A
D
C
V
K
L
A
Y
N
VVMDKRVD
L
I
V
S
G
VNR
G
P
N
M
G
M
-
D
--
I
L
H
S
G
T
V
S
G
A
M
E
G
A
M
M
---------------
N
I
-------------------
P
S
I
A
I
S
SAN
Y
E
S
P
----------
D
-----
F
-----
E
-----
G
A
A
R
F
L
I
D
F
L
K
E
-
F
D
F
S
L
L
D
PF
T
M
---
L
------
N
I
N
V
P
------------
A
----
G
E
-------
I
----
K
G
W
R
F
T
R
Q
SRRRWNDYFE
E
R
V
S
PFG
E
K
Y
Y
W
M
M
G
E
V
I
E
DDDRDDV
D
Y
K
A
V
R
E
G
Y
V
S
I
T
P
I
H
PFLTN
E
Q
C
L
K
K
L
R
E
V
YD--------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QPVCPLNRSDLGICVNVLGLISLTTSNVARCCSILAGLNNTPLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL
31
97.42
100%
-190
- C- -
M031
-
A:
[1-168]
Q
P
V
C
P
L
N
R
S
D
L
G
I
C
V
N
V
L
G
L
I
S
L
T
T
S
N
V
A
R
C
C
S
I
L
A
G
L
N
N
T
P
L
V
S
V
C
A
C
E
A
V
R
L
N
I
L
N
L
L
G
I
T
V
N
L
N
L
R
L
N
G
L
L
G
L
C
R
L
P
V
Q
P
G
F
N
C
L
L
37
94.81
100%
-196
- C- -
M037
-
A:
[1-142]
Q
P
V
C
P
L
N
R
S
D
L
G
I
C
V
N
V
L
G
L
I
S
L
T
T
S
N
V
A
R
C
C
S
I
L
A
G
L
N
N
T
P
L
V
S
V
C
A
C
E
A
V
R
L
N
I
L
N
L
L
G
I
T
V
N
L
N
L
R
L
N
G
L
L
G
L
C
R
L
P
V
Q
P
G
F
N
C
L
L
32
91.60
100%
-194
- C- -
M032
-
A:
[1-168]
Q
P
V
C
P
L
N
R
S
D
L
G
I
C
V
N
V
L
G
L
I
S
L
T
T
S
N
V
A
R
C
C
S
I
L
A
G
L
N
N
T
P
L
V
S
V
C
A
C
E
A
V
R
L
N
I
L
N
L
L
G
I
T
V
N
L
N
L
R
L
N
G
L
L
G
L
C
R
L
P
V
Q
P
G
F
N
C
L
L
34
51.56
100%
-61
- C- -
M034
-
A:
[2-103]
Q
P
V
C
P
L
N
R
S
D
L
G
I
C
V
N
V
L
G
L
I
S
L
T
T
S
N
V
A
R
C
C
S
I
L
A
G
L
N
N
T
P
L
V
S
V
C
A
C
E
A
V
R
L
N
I
L
N
L
L
G
I
T
V
N
L
N
L
R
L
N
G
L
L
G
L
C
R
L
P
V
Q
P
G
F
N
C
L
L