@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0013: (2015-11-27 )
MFPKKVLGEEWEEGRKFNKLYQKDKQRKLIKRQGILRESQNGIQVYKEDPEIVEIAKPIGKWTQMVMQDGGLMQRLAQLMKRESGRKGFWELFVEAQASTHGKHKGKGR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30......--..40-----.....------....50........60........70........80-........-------90........----100.....-..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MF
P
K
K
V
L
G
E
E
W
E
E
G
R
K
F
N
K
L
Y
Q
K
D
K
Q
R
K
L
I
K
R
QG
I
L
R--ESQ------NG
I
Q
V
------YKEDP
E
I
V
E
I
A
K
P
I
G
K
W
T
Q
M
V
M
QDG
G
L
M
Q
R
L
A
Q
L
M
K
-
R
ESGR
K
G
F
-------
W
E
L
F
V
EAQAS----THGKHKGK-GR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
84.50
22%
-10
- C3 -
4WD9
-
NISB_LACLL
A:
[5-1006]
S
F
K
A
Q
P
F
L
V
R
N
T
ILCPND
K
R
S
F
T
E
Y
T
Q
V
I
E
T
V
S
K
N
K
V
F
L
E
Q
L
L
L
A
N
P
K
L
Y
D
V
M
Q
K
Y
N
A
GLLKKKR
V
K
K
L
F
E
S
I
Y
K
Y
Y
K
R
S
Y
L
RSTPFGLF
S
E
T
S
I
G
V
F
S
K
S
S
Q
YKLM
G
K
T
T
K
GIRLD
T
Q
W
L
I
R
L
V
H
K
M
E
V
D
FSKK
L
S
F
T
R
NNA
N
Y
K
F
GD
R
V
F
Q
VYTINSSEL
E
E
V
N
I
K
YT
N
V
Y
Q
I
I
S
E
F
C
EN
D
Y
Q
K
Y
E
D
I
C
E
T
V
T
L
C
Y
GDEY
R
E
L
S
E
Q
Y
L
G
S
L
I
V
N
HYLISNLQKDLLSDFS
W
N
T
F
L
T
K
V
E
A
I
DEDKKY
I
I
P
L
K
K
V
Q
K
F
I
Q
E
Y
S
E
IEIGEG
I
E
K
L
K
E
I
Y
Q
E
M
S
Q
I
LENDNY
I
Q
I
D
L
I
S
D
S
E
I
N
F
D
V
K
Q
K
Q
Q
L
E
H
L
A
E
F
L
G
N
T
T
K
SVRRT
Y
L
D
D
Y
K
D
K
F
I
E
K
YGVD
Q
E
V
Q
I
T
E
L
F
DSTFGIGAPYNYNHPRNDFYESEPSTLYYS
E
E
E
R
E
K
Y
L
S
M
Y
V
E
A
V
K
N
HNVINLDDL
E
S
H
Y
Q
K
MDLEKKSELQ
G
L
E
L
F
L
N
L
A
K
E
YE
K
D
I
F
I
L
G
DIVGNNNLGGASGRFSALS
P
E
L
T
S
Y
H
R
T
I
V
D
S
V
E
R
E
N
E
N
K
E
I
T
S
C
E
IVFLPENIRHANVM
H
T
S
I
MRR
K
V
L
P
F
FTSTS
H
N
E
V
L
LTN
I
Y
I
G
I
D
EKE
K
F
Y
A
R
DISTQ
E
V
L
K
F
Y
ITSMYNKTLFS
N
E
L
R
F
L
Y
E
I
S
L
DDKFGNL
P
W
E
L
I
Y
RDFD
Y
I
P
R
L
V
F
D
E
I
V
I
S
P
A
K
W
-
K
I
W
G
R
D
V
N
S
K
M
T
I
R
E
L
I
Q
S
--
K
E
I
------
P
K
E
F
Y
------
I
V
N
G
D
N
K
V
Y
L
S
Q
----------
K
N
P
L
D
M
E
I
L
E
S
A
I
K
-
K
S
S
K
R
K
D
F
-------
I
E
L
Q
E
Y
F
E
D
E
----
N
I
I
N
K
G
E
K
-
G
R
V
A
D
V
V
V
P
F
IRAFIREKRVSVERREKLPFNE
W
L
Y
L
K
L
Y
I
S
INR
Q
N
E
F
L
L
SY
L
P
D
I
Q
K
I
V
A
N
L
G
G
N
L
F
F
L
R
Y
T
D
P
K
P
H
I
R
L
R
I
K
C
SD
L
F
L
A
Y
G
S
I
L
E
I
L
K
R
S
R
K
N
RIMS
T
F
D
I
S
I
Y
DQEVERYGG
F
D
T
L
E
L
S
E
A
I
F
C
A
D
S
K
I
I
P
N
L
L
T
L
I
K
DTNNDWK
V
D
D
V
S
I
L
V
N
Y
L
Y
L
K
C
F
F
QND
N
K
K
I
L
N
F
L
N
L
VGDQIFYD
K
N
F
K
E
L
K
H
A
I
K
N
L
F
L
K
M
I
A
Q
DFE
L
Q
K
V
Y
S
I
I
D
S
I
I
H
V
H
N
N
R
L
IGIERD
K
E
K
L
I
Y
Y
T
L
Q
R
L
F
V
S
EETKDFNLD
L
V
S
V
SK
27
Fugue
71.48
17%
6
- C4 -
4LYL
-
UNGI_BPPB2
B:
[3-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
S
D
I
I
E
K
E
T
G
K
Q
L
V
I
Q
E
S
I
L
M
--
L
P
E
------
E
V
E
E
V
------
I
G
N
K
P
E
--------
S
D
I
L
V
H
T
A
Y
D
E
S
-
T
D
E
N
V
M
L
L
T
-
S
D
A
P
E
Y
K
P
-------
W
A
L
V
I
Q
---
D
----
S
N
G
E
N
K
I
K
-
M
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
70.49
16%
15
* C4 *
1UGI
3
UNGI_BPPB2
A:
[2-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
L
S
D
I
I
E
K
E
T
G
K
Q
L
V
I
Q
E
S
I
L
M
--
L
P
E
------
E
V
E
E
V
------
I
G
N
K
P
E
--------
S
D
I
L
V
H
T
A
Y
D
E
S
-
T
D
E
N
V
M
L
L
T
-
S
D
A
P
E
Y
K
P
-------
W
A
L
V
I
Q
---
D
----
S
N
G
E
N
K
I
K
-
M
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
60.94
25%
3
* C3 *
2GOM
-
FIB_STAAM
A:
[105-165]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
K
E
Q
K
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
------
H
T
V
S
A
------
H
R
K
A
Q
K
A
V
N
L
V
S
F
E
Y
K
V
K
K
M
V
L
Q
E
-----
R
I
D
N
V
L
K
-
Q
G
L
V
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
60.13
11%
17
- C3 -
2VTY
-
F1_VACCA
A:
[34-186]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VYPLP
E
N
M
V
Y
R
F
D
K
S
T
N
I
L
D
Y
L
ST
E
R
D
H
V
M
M
A
V
R
Y
Y
M
S
K
Q
R
L
D
D
L
Y
R
Q
L
P
T
K
T
R
S
Y
I
D
I
I
N
I
--
Y
C
D
------
K
V
S
N
D
------
Y
M
A
S
T
K
S
F
T
V
Y
D
I
N
N
E
V
N
T
I
M
L
D
N
K
G
L
G
V
R
L
A
T
I
S
F
I
T
E
L
G
R
R
C
M
N
P
V
K
T
--
I
K
M
F
T
L
L
S
H
T
I
C
D
D
C
F
V
D
Y
I
T
D
-
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.23
28%
33
- C2 -
4ZSV
-
?
A:
[12-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
E
E
L
L
K
--
T
L
E
------
N
G
I
N
--------
S
E
E
G
E
I
R
L
V
R
K
S
Q
G
R
F
K
E
E
F
N
F
D
L
S
L
G
S
K
P
L
L
T
L
K
-
V
F
L
G
R
K
P
Y
-------
W
Q
P
W
V
E
V
F
G
V
----
N
P
N
L
R
N
V
F
-
F
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
59.16
23%
-26
- C5 -
2DBY
1
?
A:
[293-347]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
V
R
A
W
T
V
R
R
G
T
K
A
P
R
A
A
G
E
I
H
-
S
D
M
-
E
R
G
F
I
R
A
E
V
I
P
W
D
K
L
V
E
A
G
G
W
----
A
R
A
K
E
R
G
W
-
V
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.76
34%
-50
- C2 -
4PRS
-
?
A:
[174-208]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
P
D
L
V
I
S
S
G
V
L
S
--
S
E
Q
------
Y
G
I
A
V
------
R
K
E
D
T
D
L
L
E
F
I
N
S
V
L
R
E
L
K
K
S
P
Y
D
V
L
I
E
K
W
F
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.58
28%
45
- C2 -
2ARH
2
?
A:
[4-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
Y
E
E
L
L
K
--
T
L
E
------
N
G
I
N
--------
S
E
E
G
E
I
R
L
V
R
K
S
Q
G
R
F
K
E
E
F
N
F
D
L
S
L
G
S
K
P
L
L
T
L
K
-
V
F
L
G
R
K
P
Y
-------
W
Q
P
W
V
E
V
F
G
V
----
N
P
N
L
R
N
V
F
-
F
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
57.34
25%
42
- C2 -
3IUU
4
?
A:
[8-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
G
Q
I
W
H
E
G
H
S
F
N
P
I
L
T
R
E
K
D
F
L
F
L
R
G
E
A
V
L
E
--
E
A
R
A
S
ST
A
L
S
G
I
V
K
T
A
E
A
L
G
Y
R
C
V
P
S
I
S
A
R
A
R
P
G
G
A
I
E
Q
K
V
F
D
N
I
V
D
E
F
V
Q
A
A
R
M
Q
-
D
F
D
A
I
C
L
D
-------
L
H
G
A
T
L
A
E
H
T
----
L
D
T
E
G
Y
L
L
-
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
55.93
26%
-23
- C2 -
3SQG
-
?
C:
[208-262]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
L
K
K
T
T
M
Y
R
--
N
A
Q
------
G
G
V
W
Q
------
E
A
D
D
P
E
S
M
D
V
T
A
Q
I
-
H
W
K
R
S
V
----
G
G
F
Q
P
W
A
K
M
K
D
-
I
K
G
G
K
K
D
V
-------
G
V
K
N
L
K
L
F
T
P
----
R
G
G
V
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.92
28%
36
- C2 -
4ZSZ
-
?
A:
[2-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
Y
E
E
L
L
K
--
T
L
E
------
N
G
I
N
--------
S
E
E
G
E
I
R
L
V
R
K
S
Q
G
R
F
K
E
E
F
N
F
D
L
S
L
G
S
K
P
L
L
T
L
K
-
V
F
L
G
R
K
P
Y
-------
W
Q
P
W
V
E
V
F
G
V
----
N
P
N
L
R
N
V
F
-
F
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.37
34%
-67
- C2 -
4PSH
1
?
A:
[174-208]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
P
D
L
V
I
S
S
G
V
L
S
--
S
E
Q
------
Y
G
I
A
V
------
R
K
E
D
T
D
L
L
E
F
I
N
S
V
L
R
E
L
K
K
S
P
Y
D
V
L
I
E
K
W
F
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
54.84
8%
21
- C3 -
2KJG
-
?
A:
[1-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
L
E
D
P
E
F
V
K
L
R
Q
F
K
G
K
V
N
F
N
L
V
M
Q
I
L
D
E
I
E
L
D
L
--
R
G
S
------
D
----------
N
I
K
T
S
I
I
Y
V
Y
S
S
H
----
L
D
E
I
R
K
N
K
E
F
Y
D
M
I
A
E
I
L
Q
-
R
Y
Y
K
K
I
G
I
-------
E
N
V
N
Q
L
I
L
T
T
----
I
K
L
E
H
H
H
H
-
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.42
28%
39
- C2 -
4ZSX
1
?
A:
[3-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
E
E
L
L
K
--
T
L
E
------
N
G
I
N
--------
S
E
E
G
E
I
R
L
V
R
K
S
Q
G
R
F
K
E
E
F
N
F
D
L
S
L
G
S
K
P
L
L
T
L
K
-
V
F
L
G
R
K
P
Y
-------
W
Q
P
W
V
E
V
F
G
V
----
N
P
N
L
R
N
V
F
-
F
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
52.69
20%
65
- C4 -
2LW6
-
?
A:
[19-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
Q
C
N
H
H
L
L
Y
N
G
R
H
W
G
T
I
R
K
K
-----------------
A
G
------
W
A
V
R
F
------
Y
E
E
K
P
---------
G
Q
P
K
R
L
V
A
I
C
K
N
A
S
P
V
H
C
N
Y
L
K
-
C
T
N
L
A
A
G
F
------------
S
A
G
T
S
----
T
D
V
L
S
S
G
T
V
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
52.28
29%
35
* C2 *
1OWX
-
LA_HUMAN
A:
[307-334]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
E
V
E
K
E
A
-------
L
K
K
I
I
E
D
Q
Q
E
----
S
L
N
K
W
K
S
K
-
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
51.85
21%
-90
- C2 -
1RW2
-
A:
[100-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
K
A
L
Q
E
K
V
--
E
I
K
Q
L
N
H
F
-------
W
E
I
V
V
Q
D
G
I
T
----
L
I
T
K
E
E
A
S
-
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
51.22
23%
-35
- C5 -
1JAL
-
YCHF_HAEIN
A:
[290-343]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
A
W
T
V
S
V
G
A
T
A
P
K
A
A
A
V
I
H
-
T
D
F
-
E
K
G
F
IRAEVIA
Y
E
D
F
I
Q
F
N
G
E
----
N
G
A
K
E
A
G
K
-
W
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
49.80
20%
-82
- C2 -
1Q2Z
-
A:
[68-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
L
K
A
L
Q
E
K
V
E
--
I
K
Q
L
N
H
F
-------
W
E
I
V
V
Q
D
G
I
T
----
L
I
T
K
E
E
A
S
-
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------