@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0040: (2015-11-27 )
MTLEYTLTTNSVEVTVLPVYIEEQSIPYENCYVWMYNVKIKNKSLSTIQLLSRHWQIIDYKGKINEIVGAGVIGEQPVIKPGEVFKYTSGTYLNAPSGIMQGKYEFLNEENTKVFEVTIPSFSLDSPYTNIRPH
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10........20........30........40........50........60........70.-.....-..80........90.......---.-100...-....110-.........120..--.....130..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
L
-
E
Y
T
L
TTN
S
V
E
V
T
V
L
P
V
Y
I
EEQSIPYE
N
C
Y
V
W
M
Y
N
V
K
IKNKS
L
S
T
I
Q
L
L
S
RH
W
Q
I
I
DYKG
K
I
N
E
I
VGAGV-IGEQP-VIKPG
E
V
F
K
YTSG
T
Y
LNAP
S
G
---
I
-MQ
G
K
Y
E
-FLNEE---N
T
K
V
F
E
V
TIPSFSL--DSPYTNIRPH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
97.46
42%
-92
- C4 -
1XQ4
1
APAG_BORPE
A:
[7-129]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
K
P
Y
D
L
T
V
S
V
T
P
R
Y
V
P
E
Q
S
D
P
S
Q
Q
Q
Y
V
F
A
Y
T
V
R
I
T
N
T
G
S
H
P
A
Q
V
I
S
R
H
W
I
I
T
D
G
E
E
R
V
Q
E
V
R
G
L
G
V
-
V
G
Q
Q
P
-
L
L
A
P
G
E
T
F
E
Y
T
S
G
C
P
L
P
T
P
I
G
---
T
-
M
R
G
T
Y
H
-
C
V
G
E
----
N
G
I
P
F
E
V
P
I
A
E
F
L
L
--
A
M
P
R
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
96.27
42%
-97
- C4 -
1XVS
1
APAG_VIBCH
A:
[8-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
I
Q
V
Q
T
R
Y
I
E
E
Q
S
N
P
E
Y
Q
R
F
V
F
A
Y
L
I
T
I
K
N
L
S
S
Q
T
V
Q
L
M
S
R
R
W
L
I
T
D
A
D
G
K
Q
T
V
V
E
G
D
G
V
-
V
G
E
Q
P
-
R
I
K
A
N
D
E
Y
T
Y
S
S
G
T
A
L
D
T
P
V
G
---
V
-
M
Q
G
Q
Y
L
-
M
I
D
E
Q
---
G
-
E
S
F
T
V
E
I
E
P
F
R
L
--
A
V
P
H
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
95.92
43%
-98
- C4 -
1XQ4
1
APAG_BORPE
A:
[15-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
V
T
P
R
Y
V
P
E
Q
S
D
P
S
Q
Q
Q
Y
V
F
A
Y
T
V
R
I
T
N
T
G
S
H
P
A
Q
V
I
S
R
H
W
I
I
T
D
G
E
E
R
V
Q
E
V
R
G
L
G
V
-
V
G
Q
Q
P
-
L
L
A
P
G
E
T
F
E
Y
T
S
G
C
P
L
P
T
P
I
G
---
T
-
M
R
G
T
Y
H
-
C
V
G
-
E
---
N
G
I
P
F
E
V
P
I
A
E
F
L
L
--
A
M
P
R
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
95.76
41%
-86
* C4 *
1XVS
1
APAG_VIBCH
A:
[2-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
S
L
P
C
I
K
I
Q
V
Q
T
R
Y
I
E
E
Q
S
N
P
E
Y
Q
R
F
V
F
A
Y
L
I
T
I
K
N
L
S
S
Q
T
V
Q
L
M
S
R
R
W
L
I
T
D
A
D
G
K
Q
T
V
V
E
G
D
G
V
-
V
G
E
Q
P
-
R
I
K
A
N
D
E
Y
T
Y
S
S
G
T
A
L
D
T
P
V
G
---
V
-
M
Q
G
Q
Y
L
-
M
I
D
E
----
Q
G
E
S
F
T
V
E
I
E
P
F
R
L
--
A
V
P
H
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
92.90
41%
-98
- C4 -
2F1E
-
APAG_XANAC
A:
[9-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
V
E
V
S
P
R
F
L
A
H
Q
S
T
P
D
E
G
R
Y
A
F
A
Y
S
I
R
I
Q
N
A
G
A
V
P
A
R
L
V
A
R
H
W
Q
I
T
D
G
N
G
R
T
E
Q
V
D
G
E
G
V
-
V
G
E
Q
P
-
W
L
R
P
G
E
A
F
H
Y
T
S
G
V
L
L
E
T
E
Q
G
---
Q
-
M
Q
G
H
Y
D
-
M
V
A
D
D
---
G
T
E
-
F
I
A
P
I
A
A
F
V
L
--
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
92.29
41%
-81
- C4 -
1TZA
1
APAG_SHEON
A:
[3-124]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
D
N
S
I
R
V
E
V
K
T
E
Y
I
E
Q
Q
S
S
P
E
D
E
K
Y
L
F
S
Y
T
I
T
I
I
N
L
G
E
Q
A
A
K
L
E
T
R
H
W
I
I
T
D
A
N
G
K
T
S
E
V
Q
G
A
G
V
-
V
G
E
T
P
-
T
I
P
P
N
T
A
Y
Q
Y
T
S
G
T
V
L
D
T
P
F
G
---
I
-
M
Y
G
T
Y
G
-
M
V
S
E
----
S
G
E
H
F
N
A
I
I
K
P
F
R
L
--
A
T
P
G
L
L
H
L
E
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
92.14
39%
-76
- C4 -
1TZA
1
APAG_SHEON
A:
[3-134]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
D
N
S
I
R
V
E
V
K
T
E
Y
I
E
Q
Q
S
S
P
E
D
E
K
Y
L
F
S
Y
T
I
T
I
I
N
L
G
E
Q
A
A
K
L
E
T
R
H
W
I
I
T
D
A
N
G
K
T
S
E
V
Q
G
A
G
V
-
V
G
E
T
P
-
T
I
P
P
N
T
A
Y
Q
Y
T
S
G
T
V
L
D
T
P
F
G
---
I
M
Y
-
G
T
Y
G
M
V
S
E
S
G
---
E
H
--
F
N
A
I
I
K
P
F
R
L
--
A
T
P
G
L
L
H
L
E
H
H
H
HHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
92.08
41%
-88
- C4 -
1TZA
1
APAG_SHEON
A:
[6-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
I
R
V
E
V
K
T
E
Y
I
E
Q
Q
S
S
P
E
D
E
K
Y
L
F
S
Y
T
I
T
I
I
N
L
G
E
Q
A
A
K
L
E
T
R
H
W
I
I
T
D
A
N
G
K
T
S
E
V
Q
G
A
G
V
-
V
G
E
T
P
-
T
I
P
P
N
T
A
Y
Q
Y
T
S
G
T
V
L
D
T
P
F
G
---
I
-
M
Y
G
T
Y
G
-
M
V
S
E
S
---
G
-
E
H
F
N
A
I
I
K
P
F
R
L
--
A
T
P
G
L
L
H
L
E
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
91.66
38%
-92
- C4 -
2F1E
-
APAG_XANAC
A:
[6-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
R
V
E
V
E
V
S
P
R
F
L
A
H
Q
S
T
P
D
E
G
R
Y
A
F
A
Y
S
I
R
I
Q
N
A
G
A
V
P
A
R
L
V
A
R
H
W
Q
I
T
D
G
N
G
R
T
E
Q
V
D
G
E
G
V
-
V
G
E
Q
P
-
W
L
R
P
G
E
A
F
H
Y
T
S
G
V
L
L
E
T
E
Q
G
---
Q
-
M
Q
G
H
Y
D
-
M
V
A
D
----
D
G
T
E
F
I
A
P
I
A
A
F
V
L
--
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
54.61
18%
-89
- C6 -
4CR2
-
RPN1_YEAST
Z:
[49-993]
LELL
V
E
R
L
K
E
DDS
S
L
Y
E
A
S
L
N
A
L
K
E
S
I
KNSTSSMTAVPK
P
L
K
F
L
RPT
Y
P
D
L
C
S
I
Y
D
KWTDPN
L
K
S
S
L
A
D
V
L
S
I
L
A
M
T
Y
SENGKH
D
S
L
R
Y
R
L
L
SDV
S
D
F
E
GWGHEY
I
R
H
L
A
L
E
I
G
E
V
Y
N
D
Q
V
E
K
D
A
E
D
ETSSDGSKSDGSAATSGFEFSK
E
D
T
L
R
L
C
L
D
I
V
P
Y
F
L
K
H
NG
E
E
D
A
V
-
D
L
L
L
E
I
E
S
I
D
--
K
L
P
Q
F
V
D
E
N
T
--
F
Q
R
V
C
Q
Y
M
V
A
C
V
P
L
L
P
P
P
E
D
V
A
F
L
K
T
A
Y
S
I
Y
L
S
Q
N
E
L
T
D
A
I
A
L
A
V
R
L
G
E
E
D
-
M
I
R
--
S
V
F
D
A
T
S
-------
D
P
---
V
-
M
H
K
Q
L
A
-
Y
I
L
A
A
---
Q
K
T
S
F
E
-------------
Y
E
G
V
Q
D
I
I
G
N
G
KLSEHFLYL
A
K
E
L
N
L
T
G
PK
V
P
E
D
I
Y
K
S
H
L
D
N
S
K
S
V
F
S
S
A
GLDS
A
Q
Q
N
L
A
S
S
F
V
N
G
F
L
N
LGYCND
K
L
I
V
D
N
D
NWVYKTK
G
D
G
M
T
S
A
V
A
S
I
G
S
I
Y
QWN
L
D
G
L
Q
Q
L
D
K
Y
L
Y
VDE
P
E
V
K
A
G
A
L
L
G
I
G
I
S
A
SGVHDGEVEP
A
L
L
L
L
Q
D
Y
V
T
NPD
T
K
I
S
S
A
A
I
L
G
L
G
I
A
F
AGSKN
D
E
V
L
G
L
L
LPIAASTDLPIETAAM
A
S
L
A
L
A
H
V
F
VGTCN
G
D
I
T
T
S
I
M
D
N
F
L
E
RTAIELK
T
D
W
V
R
F
L
A
L
A
L
G
I
L
Y
MGQGEQV
D
D
V
L
E
T
I
S
A
I
EH
P
M
T
S
A
I
E
V
L
V
G
S
C
A
Y
TGTGD
V
L
L
I
Q
D
L
L
H
R
L
TL
A
Y
A
V
L
G
I
A
L
I
A
L
GE
D
I
G
K
E
M
S
L
R
H
F
G
H
L
M
H
Y
GN
E
H
I
R
R
M
V
P
L
A
M
G
I
V
S
VSDPQ
M
K
V
F
D
T
L
T
R
F
S
H
DAD
L
E
V
S
M
N
S
I
F
A
M
G
L
C
G
AGTNNAR
L
A
Q
L
L
R
Q
L
A
S
Y
YSRE
Q
D
A
L
F
I
T
R
L
A
Q
G
L
L
H
LGKGTMTMDVFNDAHVLN
K
V
T
L
A
S
I
L
T
T
A
V
GLVSPSFMLKHHQLFYMLNAG
I
R
P
K
F
I
L
A
L
NDEG
E
P
I
K
V
N
V
R
V
G
QPVLLNHG
E
R
A
E
LETDEYISYTSHIEGV
V
I
L
K
K
NPDYREEE
25
HHSearch
54.18
16%
-59
- C4 -
3NRF
1
?
A:
[5-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
V
M
V
F
A
R
Q
G
D
K
G
S
V
S
V
G
D
K
H
F
R
T
Q
A
F
K
V
R
L
V
N
A
A
K
S
E
I
S
L
K
N
S
C
L
V
A
Q
S
A
A
G
Q
S
F
R
L
D
T
V
D
--
E
E
L
T
A
D
T
L
K
---------------
P
G
A
---
S
-
V
E
G
D
A
I
-
F
A
S
E
----
D
D
A
V
Y
G
A
S
L
V
R
L
S
D
--
R
C
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
53.24
15%
-53
- C4 -
3NRF
1
?
A:
[5-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
V
M
V
F
A
R
Q
G
D
K
G
S
V
S
V
G
D
----------
K
H
F
R
T
Q
A
F
K
V
R
L
V
N
A
A
K
S
E
I
S
L
K
N
S
C
L
V
A
Q
S
A
A
G
Q
S
F
R
L
D
T
V
D
E
-
E
L
T
A
D
-
T
L
K
P
G
A
S
V
E
-------------------
G
D
A
I
-
F
A
S
E
----
D
D
A
V
Y
G
A
S
L
V
R
L
S
D
--
R
C
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
50.43
29%
-86
- C7 -
4UNY
2
?
A:
[237-298]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
I
L
M
I
N
S
N
G
N
L
V
A
P
R
G
Y
F
K
L
-
R
T
G
K
S
S
-
V
M
R
S
D
A
L
I
D
T
C
V
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
50.34
29%
-73
- C7 -
1MQN
1
HEMA_I63A3
A:
[236-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
V
L
V
I
N
S
N
G
N
L
I
A
P
R
G
Y
F
K
M
-
R
T
G
K
S
S
-
I
M
R
S
D
A
P
I
D
T
C
I
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
50.27
29%
-81
- C7 -
4UNX
3
?
A:
[230-291]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
I
L
M
I
N
S
N
G
N
L
V
A
P
R
G
Y
F
K
L
-
R
T
G
K
S
S
-
V
M
R
S
D
A
L
I
D
T
C
V
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.15
29%
-84
- C7 -
4UNW
3
?
A:
[230-291]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
I
L
M
I
N
S
N
G
N
L
V
A
P
R
G
Y
F
K
L
-
R
T
G
K
S
S
-
V
M
R
S
D
A
L
I
D
T
C
V
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
50.08
29%
-76
- C7 -
4ZCJ
1
HEMA_I68A4
A:
[230-291]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
V
L
V
I
N
S
N
G
N
L
I
A
P
R
G
Y
F
K
M
-
R
T
G
K
S
S
-
I
M
R
S
D
A
P
I
D
T
C
I
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
49.76
29%
-72
* C7 *
3VUN
1
HEMA_I68A0
A:
[236-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
V
L
V
I
N
S
N
G
N
L
I
A
P
R
G
Y
F
K
M
-
R
T
G
K
S
S
-
I
M
R
S
D
A
P
I
D
T
C
I
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
49.55
29%
-73
- C7 -
1MQM
1
?
A:
[236-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
V
L
V
I
N
S
N
G
N
L
I
A
P
R
G
Y
F
K
M
-
R
T
G
K
S
S
-
I
M
R
S
D
A
P
I
D
T
C
I
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
49.29
29%
-68
- C7 -
1MQL
1
HEMA_I63A3
A:
[236-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
P
G
D
V
L
V
I
N
S
N
G
N
L
I
A
P
R
G
Y
F
K
M
-
R
T
G
K
S
S
-
I
M
R
S
D
API
D
T
C
I
S
E
C
I
T
P
N
G
S
I
PN
D
K
P
F
Q
N
V
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------