@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0054: (2015-11-28 )
MRKLSYILIVIFISFPILLAASENNEKTQIKDIKCIGNERVGDQTIKFYIKLEPDSYVNDDDIDSIIKSLYKTKLFASVHAYIDNEKKLVIKVQENPLINKVILKGNKQFKSKELLNNVIQSKPLTIFTETKLQSDLVNLVTLYRHNGKIGVKVEYELDKLDGNRVNLIFKVKEGKTSRVKSVRFIGNKNFSENELERAIKVQSNDIFNKLFRAIFKGGNHYSPQYLLTNEELLDRFYSSKGYINNSIQPIAEIDNNNQIELTFLIDEGQQYLFGSNKVNVEAEIQDPDLKEKVLELITKEDNKVFDRVKVSNAVEKINKYLNEIGYIFAKVNPEYTQHGNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNTSEVQKSRRRLIGSDFFETVKINSYAINDNAVNLDLNVKEKNTTSLYLGGGVSFPGGAFIKTDFKDRNLFGTGKELSFALEKSQYVFSTNVEVVENNFNDSDTSLGVDVFYERQDKPNTTFDSCDWGGIAQLLHKIIENLTNSIRYSYKYNHIHMDNKGGKDEDISEIIRSQQGEYQISSVGYTLAYNKLDNLYAPREGYLLRLSQDISGLGGNMNFLKSEFLSFYTHPILSKIDDDIILRFKMAAGYIFSYTDKELNIGQRFFKGGNEIRGFDLSGIGPRAKDKNKSSLGGKTYFNLTQQVDFPLPKLYDYVGIKGSLFVDYATLFGLDIKKEYEGKYHDSKLVRVSPGFGFSMPSPFGGRFRLDFGFPLAKEPYDIIPSSNIKFSIEVGI
Atome Classification :
(20 SA)
.........10........20........30........40---.........50........60........70........80...--..---..-.90........100.......---110.......-----120-..--.......130.......140.......150.......160........170.......180.......190-.........200.......210.....-..220.......230.......240......--.250....--.-....260.......270.......280....-...290.......--300-------.........310.......320.......330----.--..--..-----..-..--340.......350.......360.......370.......380.......390....----.----..400...-....-410..--.--.--.....420--.......430.......440.......450.......460.......470.......--480.......490.....---..500---.....---...510.......520.......530.......540..---......550..---..----------...560-....------------...570----.......580.......590.......600.......610.......620.--......630.......640.......650.-..-....660.....------------------------.--------.670-...--.....680.......690.......--700.........710.....---------..---720.-----......730-.........740.......750.......760.......770......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MR
K
L
S
Y
I
L
I
V
I
FISF
P
I
L
L
A
ASENNEKTQ
I
K
D
I
K
C
IGNER----VGD
Q
T
I
K
F
Y
I
K
LEPDSYVN
D
D
D
I
D
S
I
I
K
S
L
Y
K
T
K
L
F
A
S
V
H
A
Y
ID--NE---
K
K
-
L
V
I
K
VQENPL
I
N
K
V
I
LKGNKQ---F
K
S
K
E
L
L
N
N
V
-----
I
---QS--KP
L
T
I
F
T
E
T
K
L
Q
S
D
L
V
N
L
V
T
L
Y
RHNG
K
I
G
V
K
V
E
Y
E
LDKL-DG
N
R
V
N
L
I
F
K
VKEGKTSR
V
K
S
V
R
F
IGNKN---F
S
E
N
E
L
E
R
A
I
KVQ
S
N
D
I
F
N
K
L
F
R
A
I
FK-GGNHYS
P
Q
Y
L
L
T
N
E
E
L
L
D
R
F
Y
SSKGYINNSI--
Q
P
--
I
A
EI--D-NN
N
Q
I
E
L
T
F
L
IDEGQQ
Y
L
FGS
N
K
V
N
V
E
A
EIQ-DP
D
L
K
E
K
V
L
E
L
I
T--K---------ED
N
K
V
F
D
R
V
K
V
S
N
A
V
E
K
I
N
K
Y
L
N
E
I
G
Y
I
F
A
------K--VN--PE-----YT-QH--G
N
V
V
D
V
T
Y
R
VLPG
K
K
I
Y
I
N
Q
I
T
IDGND
R
T
L
D
K
V
I
R
S
K
LSVAEGDAY
N
T
S
E
V
Q
K
S
R
R
R
----
L
----
I
G
SD
F
F
E
T
-
V
K
I
N
-
S
--
Y
A
--I--N--D
N
A
V
N
L
D
L
--
N
V
KEKNT
T
S
L
Y
LGGGVSFPG
G
A
F
I
KTDFKDRNLFGTGKE
L
S
F
A
LEKS
Q
Y
V
FSTN
V
E
V
--
V
ENNFNDSDTSL
G
V
D
V
F
Y
---ERQD----KPNTT---FDSCD
W
G
G
I
A
Q
L
L
H
K
I
I
E
N
L
T
N
S
I
R
Y
S
Y
K
Y
N
H
I
H
-MDN---KGGK
D
E
D
I
S
E
I
---
I
R
----------SQQG
E
Y
-
Q
I
SS------------V
G
Y
T
L
A
----YNK
L
D
N
LYAPRE
G
Y
L
L
R
L
S
Q
D
I
SGLGGN
M
N
F
L
K
S
E
F
L
S
F
Y
T
H
P
I
L
S
KIDD
D
--
I
I
L
R
F
K
MAA
G
Y
I
F
S
YTDKEL
N
I
G
Q
R
F
F
KGG-NE-IR
G
F
DLSGIGPR------------------------A--------KDK--NKS--SLGGK
T
Y
F
N
L
T
Q
QVDFP
L
P
K
L
Y
D
Y
V--G--IK
G
S
L
F
V
D
Y
A
T
L
FGLD
I
---------
K
K
---
E
YEG-----KYHD
S
K
L
---
V
R
VSPGFGFSMPSPFG
G
R
F
R
L
DFGFPLAKEPYDIIPSS
N
I
K
F
S
I
E
VGI
1
PsiBlast_PDB
85.56
23%
-30
- C2 -
4K3B
-
?
A:
[21-789]
-------------------
A
------
D
F
T
I
Q
D
I
R
V
E
G
L
Q
R
----
T
E
P
S
T
V
F
N
Y
L
P
V
K
V
G
D
T
Y
N
D
T
H
G
S
A
I
I
K
S
L
Y
A
T
G
F
F
D
D
V
R
V
E
T
---
A
D
---
G
Q
-
L
L
L
T
V
I
E
R
P
T
I
G
S
L
N
I
T
G
A
K
M
---
L
Q
N
D
A
I
K
K
N
L
E
SFGL
A
---
Q
S
--
Q
---
Y
F
N
Q
A
T
L
N
Q
A
V
A
G
L
K
E
E
Y
L
G
R
G
K
L
N
I
Q
I
T
P
K
V
T
K
L
-
A
R
N
R
V
D
I
D
I
T
I
D
E
G
K
S
A
K
I
T
D
I
E
F
E
G
N
Q
V
---
Y
S
D
R
K
L
M
R
Q
M
S
L
T
E
G
G
I
W
T
W
L
T
R
S
------
D
R
F
D
R
Q
K
F
A
Q
D
M
E
K
V
T
D
F
Y
Q
N
N
G
Y
F
D
F
R
I
L
D
T
D
--
I
Q
T
N
--
E
-
D
K
T
R
Q
T
I
K
I
T
V
H
E
G
G
R
F
R
W
G
--
K
V
S
I
E
G
D
T
N
-
E
V
P
-
K
A
E
L
E
K
L
L
T
--
M
---------
K
P
G
K
W
Y
E
R
Q
Q
M
T
A
V
L
G
E
I
Q
N
R
M
G
S
A
G
Y
A
Y
S
------
E
I
S
V
Q
--
P
L
-----
P
N
-
A
G
--
T
K
T
V
D
F
V
L
H
I
E
P
G
R
K
I
Y
V
N
E
I
H
I
T
G
N
N
K
T
R
D
E
V
V
R
R
E
L
R
Q
M
E
S
A
P
Y
D
T
S
K
L
Q
R
S
K
E
R
----
V
----
E
L
L
G
Y
F
D
N
-
V
Q
F
D
-
A
V
P
L
A
--
G
--
T
--
P
D
K
V
D
L
N
M
--
S
L
T
E
R
S
T
G
S
L
D
L
S
A
G
W
V
Q
D
T
G
L
V
M
S
A
G
V
S
Q
D
N
L
F
G
T
G
K
S
A
A
L
R
A
S
R
S
K
T
T
L
N
G
S
L
S
F
--
T
D
P
Y
F
T
A
D
G
V
S
L
G
Y
D
I
Y
G
---
K
A
F
D
PR--
K
A
S
T
S
VKQ
Y
K
T
T
T
A
G
G
G
V
R
M
G
I
P
V
T
E
--
Y
D
R
V
N
F
G
L
A
A
E
H
L
T
-
V
N
T
---
Y
N
K
A
P
K
R
Y
A
D
F
---
I
R
K
YGKTDGA
D
G
S
F
K
G
L
L
-
Y
K
G
T
------------
V
G
W
--
G
----
R
N
K
T
D
S
A
S
W
P
T
R
G
Y
L
T
G
V
N
A
E
I
A
L
P
G
S
K
L
Q
Y
Y
S
A
T
H
N
Q
T
W
F
F
P
L
S
K
T
F
T
L
M
--
L
G
G
E
V
G
I
A
G
G
Y
G
R
T
---
K
E
I
P
F
F
E
N
F
Y
G
G
G
L
G
S
-
V
R
G
Y
E
S
G
T
L
G
P
K
------------------------
V
--------
Y
D
E
YG
E
K
I
--
S
Y
G
G
N
K
K
A
N
V
S
A
E
L
L
F
P
M
P
G
A
K
D
A
R
--
T
--
V
R
L
S
L
F
A
D
A
G
S
V
W
D
G
R
T
Y
T
A
AENGNN
K
S
---
V
Y
S
E
-----
N
A
H
K
S
-
F
T
N
E
L
R
Y
S
A
G
G
A
V
T
W
L
S
P
L
-
G
P
M
K
F
S
Y
A
Y
P
L
K
K
K
P
E
D
E
I
Q
----
R
F
Q
F
Q
L
G
T
38
Fugue
70.48
25%
-11
- C2 -
4K3C
-
?
A:
[1-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
I
S
E
M
R
I
I
G
D
T
Q
---
K
L
D
N
E
L
N
Q
L
L
T
H
-------------
F
K
-
A
G
Q
L
F
R
K
T
E
L
S
I
I
E
E
Q
I
K
Q
I
L
G
D
R
G
Y
--------------------------------------
G
S
A
K
V
D
L
-----------------------------------------------------------------------
Y
--
P
K
-----
F
N
-
E
E
--
D
H
T
V
Q
I
N
F
I
V
D
A
G
R
R
I
Y
V
R
K
I
R
F
E
G
N
D
V
T
A
D
S
T
L
R
R
E
M
R
Q
Q
E
G
A
W
L
S
T
S
A
V
S
L
A
K
S
R
----
L
----
E
R
T
G
F
Y
E
T
-
V
E
M
S
-
M
--
P
T
--
V
--
K
NT
D
D
Q
V
D
I
I
Y
--
K
I
K
E
R
N
T
G
S
I
N
F
G
V
G
Y
G
S
G
S
G
L
S
Y
N
A
G
I
T
Q
D
N
F
L
G
M
G
S
S
L
G
L
N
G
S
R
N
T
D
S
T
N
V
N
L
S
Y
--
T
E
P
Y
F
T
K
D
G
V
S
L
G
G
N
I
F
Y
---
E
D
Y
D
NSAR
K
A
S
A
A
---
Y
K
R
K
T
Y
G
A
S
G
T
L
G
F
P
V
D
E
N
N
S
Y
Y
L
G
L
G
Y
T
H
D
K
L
R
N
V
E
R
---
E
Y
T
R
E
K
Y
V
N
S
M
K
F
P
I
N
----------
P
Q
N
S
H
Y
D
R
I
Q
S
------------
A
D
F
D
L
S
F
G
W
N
Y
N
N
L
N
R
G
Y
F
P
T
A
G
S
S
A
N
I
S
G
K
L
T
L
P
G
S
D
N
K
Y
Y
Q
V
G
T
N
F
S
G
Y
I
P
L
N
S
--
E
H
K
--
W
V
I
A
T
K
G
G
L
A
Y
T
N
S
F
G
G
K
E
V
P
F
Y
Q
L
Y
S
A
G
G
M
G
S
-
L
R
G
F
A
G
G
S
I
G
P
K
------------------------
A
I
Y
Y
REDGF
K
A
P
--
S
Q
D
--
V
I
G
G
N
A
M
V
N
A
S
L
E
L
I
I
P
A
P
F
I
S
D
K
Y
QH
N
--
V
R
T
S
V
F
V
D
A
A
T
V
W
N
T
K
W
---------
K
Q
---
S
K
A
D
YPNLP
D
F
G
D
Y
K
R
---
V
R
A
S
A
G
I
A
L
Q
W
Q
S
P
I
G
-
P
L
S
F
S
Y
A
K
P
I
K
K
Y
A
G
D
E
I
E
Q
F
Q
F
T
V
G
S
T
F
--
36
Fugue
67.22
26%
-67
- C2 -
2QCZ
-
BAMA_ECOLI
A:
[22-351]
-------------------------
E
G
F
V
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
D
--
G
----
D
T
-
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
-----
E
---
A
S
GV
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
G
N
H
A
---
F
T
T
D
E
L
I
-----------------------
S
H
F
Q
L
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
N
I
--
D
S
--
T
Q
V
S
L
T
P
-
D
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
--
G
V
E
V
S
---
G
-
N
L
A
G
H
S
A
E
I
E
Q
L
T
--
K
---------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
--
S
M
-----
P
E
-
I
N
--
D
A
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
65.40
24%
-68
- C2 -
2QCZ
-
BAMA_ECOLI
A:
[26-351]
-----------------------------
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
D
--
G
D
---
T
--
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
-----
E
---
A
S
GV
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
G
N
H
A
---
F
T
T
D
E
L
I
S
H
F
Q
L
-----------------------
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
N
I
--
D
S
T
Q
V
S
L
T
--
P
-
D
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
G
N
L
A
G
H
-
S
A
E
I
E
----
Q
L
T
K
------------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
S
M
P
E
-----
I
N
-
D
A
----
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
65.15
24%
-67
- C2 -
2QDF
1
BAMA_ECOLI
A:
[10-335]
-----------------------------
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
D
--
G
D
---
T
--
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
-----
E
---
A
S
GV
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
G
N
H
A
---
F
T
T
D
E
L
I
S
H
F
Q
L
R
--------------------
Q
K
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
N
I
--
D
S
T
Q
V
S
L
T
--
P
-
D
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
G
N
L
A
G
H
-
S
A
E
I
E
----
Q
L
T
K
--
I
---------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
S
M
P
E
-----
I
N
-
D
A
--
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.28
26%
-21
- C2 -
4K3C
-
?
A:
[15-503]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
N
E
L
N
Q
L
L
T
--
H
F--------
K
A
G
Q
L
F
R
K
T
E
L
S
I
I
E
E
Q
I
K
Q
I
L
G
D
R
G
Y
G
S
A
------
K
--
V
D
L
Y
P
K
-----
F
N
-
E
E
--
D
H
T
V
Q
I
N
F
I
V
D
A
G
R
R
I
Y
V
R
K
I
R
F
E
G
N
D
V
T
A
D
S
T
L
R
R
E
M
R
Q
Q
E
G
A
W
L
S
T
S
A
V
S
L
A
K
S
R
----
L
----
E
R
T
G
F
Y
E
T
-
V
E
M
S
-
M
--
P
T
--
V
KN
T
--
D
D
Q
V
D
I
I
Y
--
K
I
K
E
R
N
T
G
S
I
N
F
G
V
G
Y
G
S
G
S
G
L
S
Y
N
A
G
I
T
Q
D
N
F
L
G
M
G
S
S
L
--
G
L
N
G
S
R
N
T
D
S
T
N
V
N
L
S
Y
T
E
P
Y
F
T
K
D
G
V
S
L
G
G
N
I
F
Y
---
E
D
Y
D
NSAR
K
A
S
A
A
---
Y
K
R
K
T
Y
G
A
S
G
T
L
G
F
P
V
D
E
N
--
N
S
Y
Y
L
G
L
G
Y
T
H
D
K
-
L
R
N
VER
E
Y
T
R
E
K
Y
V
N
S
M
K
F
P
I
N
----------
P
Q
N
S
H
Y
D
R
I
Q
S
------------
A
D
F
D
L
S
F
G
W
N
Y
N
N
L
N
R
G
Y
F
P
T
A
G
S
S
A
N
I
S
G
K
L
T
-
L
P
G
S
D
N
K
Y
Y
Q
V
G
T
N
F
S
G
Y
I
P
L
N
S
-
E
H
K
--
W
V
I
A
T
K
G
G
L
A
Y
T
N
S
F
G
G
K
E
V
P
F
Y
Q
L
Y
S
A
G
G
M
G
S
-
L
R
G
F
A
G
G
S
I
G
P
K
------------------------
A
I
Y
Y
REDGF
K
A
P
--
S
Q
D
--
V
I
G
G
N
A
M
V
N
A
S
L
E
L
I
I
P
A
P
F
I
S
D
K
Y
QH
N
--
V
R
T
S
V
F
V
D
A
A
T
V
W
N
T
K
W
---------
K
Q
SKA
D
Y
P
N
LP---
D
F
G
D
Y
K
R
---
V
R
A
S
A
G
I
A
L
Q
W
Q
S
P
I
G
P
L
S
F
S
Y
A
K
P
I
K
K
Y
A
G
D
E
I
E
Q
F
Q
F
T
V
G
S
T
F
---
22
HHSearch
63.92
24%
-70
* C2 *
2QDF
1
BAMA_ECOLI
A:
[5-334]
------------------------
A
E
G
F
V
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
----
D
---
G
D
T
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
-
M
L
K
Q
N
-----
L
E
A
S
G
V
--
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
G
N
H
A
---
F
T
T
D
E
L
I
S
H
F
Q
L
R
--------------------
Q
K
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
N
I
D-
S
T
--
Q
V
S
L
--
T
P
D
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
--
G
N
L
A
G
H
S
A
E
---
I
E
Q
L
T
K
--
I
---------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
--
S
M
-----
P
E
-
I
N
DA
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.61
24%
-14
- C2 -
4C4V
-
?
B:
[1-463]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
R
F
Y
V
R
K
I
R
F
E
G
N
D
T
S
K
D
A
V
L
R
R
E
M
R
Q
M
E
G
A
W
L
G
S
D
L
V
D
Q
G
K
E
R
----
L
----
N
R
L
G
F
F
E
T
-
V
D
T
D
-
T
--
Q
R
--
V
--
P
--
G
S
P
D
Q
V
D
V
V
Y
K
V
K
E
R
N
T
G
S
F
N
F
G
I
G
Y
G
T
E
S
G
V
S
F
Q
A
G
V
Q
Q
D
N
W
L
G
T
G
Y
A
V
G
I
N
G
T
K
N
D
Y
Q
T
Y
A
E
L
S
V
--
T
N
P
Y
F
T
V
D
G
V
S
L
G
G
R
L
F
Y
N
D
F
Q
A
D
D
----
A
D
S
S
D
---
Y
T
N
K
S
Y
G
T
D
V
T
L
G
F
P
I
--
N
E
E
N
S
L
R
A
G
L
G
Y
V
H
N
S
-
L
S
N
---
M
--
Q
P
Q
V
A
M
W
R
---
Y
L
----------
Y
S
M
G
E
H
-
P
S
T
S
DQD
N
S
F
K
T
D
D
F
T
F
N
Y
G
W
T
----
Y
N
K
L
D
R
G
Y
F
P
T
D
G
S
R
V
N
L
T
G
K
V
T
I
P
G
S
D
N
E
Y
Y
K
V
T
L
D
T
A
T
Y
V
P
----
I
D
D
D
HK
W
V
V
L
G
R
T
R
W
G
Y
G
D
G
L
G
G
K
E
M
P
F
Y
E
N
F
Y
A
G
G
-
S
S
T
V
R
G
F
Q
S
N
T
I
G
P
K
AIYFPHQ---------------------------
D
L
--
C
K
S
DD
A
V
G
G
N
A
M
A
V
A
S
L
E
F
I
T
P
T
P
F
I
S
D
K
Y
--
A
NS
V
R
T
S
F
F
W
D
M
G
T
V
W
D
T
N
W
D--------
S
S
---
Q
Y
S
G
YP---
D
Y
S
D
P
S
N
---
I
R
M
S
A
G
I
A
L
Q
W
M
S
P
L
G
---
P
L
V
F
S
Y
A
Q
P
F
K
K
Y
D
G
D
K
A
E
Q
F
Q
F
N
I
G
K
--
3
PsiBlast_PDB
59.80
25%
-48
- C2 -
3EFC
-
BAMA_ECOLI
A:
[26-349]
-----------------------------
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
D
--
G
D
---
T
--
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
-----
E
---
A
S
GV
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
G
N
H
A
---
F
T
T
D
E
L
I
S
H
F
Q
L
R
D
E
V
P
W
W
N
V
V
------
G
D
R
K
Y
Q
K
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
N
I
--
D
S
T
Q
V
S
L
T
--
P
-
D
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
G
N
L
A
G
H
-
S
A
E
I
E
Q
----
L
T
K
--
I
---------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
S
M
P
E
-----
I
N
-
D
A
--
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
58.48
25%
-55
- C2 -
3EFC
-
BAMA_ECOLI
A:
[23-349]
--------------------------
G
F
V
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
----
D
---
G
D
T
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
-
M
L
K
Q
N
-----
L
E
A
S
G
V
--
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
G
N
H
A
---
F
T
T
D
E
L
I
S
H
F
Q
L
R
D
E
---
V
P
W
W
---
N
V
V
G
D
R
K
Y
Q
K
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
N
I
D-
S
T
--
Q
V
S
L
--
T
P
D
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
--
G
N
L
A
G
H
S
A
E
---
I
E
Q
L
T
K
--
I
---------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
--
S
M
-----
P
E
-
I
N
DA
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
55.58
28%
-63
- C2 -
2V9H
-
BAMA_ECOLI
A:
[26-172]
-----------------------------
V
K
D
I
H
F
E
G
L
Q
R
----
V
A
V
G
A
A
L
L
S
M
P
V
R
T
G
D
T
V
N
D
E
D
I
S
N
T
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
D
--
G
D
----
T
-
L
L
V
Q
V
K
E
R
P
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
-----
E
---
A
S
GV
R
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
K
A
V
V
T
P
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
55.41
17%
-32
- C2 -
2QDF
1
BAMA_ECOLI
A:
[5-333]
-------------------------------------------------------------------------------------------------------
A
E
G
F
V
V
K
D
I
H
F
E
G
L
Q
R
---
V
A
V
G
-
A
A
L
L
S
-----
M
---
P
V
--
R
T
G
D
T
V
N
D
E
D
I
S
N
T
---
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
--------
D
G
D
T
L
L
V
Q
V
K
E
R
P
--
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
E
A
S
G
-----
V
------
R
-
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
--
K
A
--
V
V
T
P
--
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
--
G
N
H
A
F
T
T
D
E
---
L
I
S
H
F
Q
LR----------------
Q
K
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
------
N
--
I
D
--
S
T
-----
Q
V
S
L
T
PD
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
G
N
L
A
G
H
S
A
E
I
E
Q
L
T
K
I
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
----
G
R
Y
G
Y
A
Y
P
R
V
Q
S
M
-
P
--
E
I
N-
D
--
A
--
D
K
T
V
K
L
R
V
--
N
V
D
A
G
N
R
F
Y
V
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
52.49
17%
-23
- C2 -
3EFC
-
BAMA_ECOLI
A:
[23-349]
---------------------------------------------------------------------------------------------------------
G
F
V
V
K
D
I
H
F
E
G
L
Q
R
---
V
A
V
G
-
A
A
L
L
S
-----
M
---
P
V
--
R
T
G
D
T
V
N
D
E
D
I
S
N
T
---
I
R
A
L
F
A
T
G
N
F
E
D
V
R
V
L
R
--------
D
G
D
T
L
L
V
Q
V
K
E
R
P
--
T
I
A
S
I
T
F
S
G
N
K
S
---
V
K
D
D
M
L
K
Q
N
L
E
A
S
G
-----
V
------
R
-
V
G
E
S
L
D
R
T
T
I
A
D
I
E
K
G
L
E
D
F
Y
Y
S
V
G
K
Y
S
A
S
V
--
K
A
--
V
V
T
P
--
L
-
P
R
N
R
V
D
L
K
L
V
F
Q
E
G
V
S
A
E
I
Q
Q
I
N
I
V
--
G
N
H
A
F
T
T
D
E
---
L
I
S
H
F
Q
--
L
RDEVPWWNV
V
G
D
R
K
Y
Q
K
Q
K
L
A
G
D
L
E
T
L
R
S
Y
Y
L
D
R
G
Y
A
R
F
------
N
--
I
D
--
S
T
-----
Q
V
S
L
T
PD
K
K
G
I
Y
V
T
V
N
I
T
E
G
D
Q
Y
K
L
S
G
V
E
V
S
G
N
L
A
G
H
S
A
E
I
E
Q
L
T
K
I
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
----
I
K
K
L
L
G
R
Y
G
Y
A
Y
--
P
R
V
Q
-
S
M
P
E
I
N-
D
--
A
--
D
K
T
V
K
L
R
V
--
N
V
D
A
G
N
R
F
Y
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
52.30
17%
-26
- C2 -
3Q6B
-
BAMA_ECOLI
A:
[266-420]
----------------------------------------------------------------------------------------------------------
Y
K
L
S
G
V
E
V
S
G
N
L
A
---
G
H
S
A
-
E
I
E
Q
L
-----
T
---
K
I
--
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
R
V
Q
S
M
P
E
I
N
D
A
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
I
R
F
E
G
N
D
T
---
S
K
D
A
V
L
R
R
E
M
R
Q
M
E
---------------
G
A
W
L
G
S
D
L
V
D
Q
G
K
E
R
L
----
N
R
L
G
F
F
E
T
V
D
T
-
D
T
--
Q
R
V
P
--
G
-
S
P
D
Q
V
D
V
V
Y
K
V
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
51.58
23%
-41
- C2 -
3Q6B
-
BAMA_ECOLI
A:
[266-420]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
L
S
G
V
E
V
S
--
G
N
L
A
G
H
S
A
E
---
I
E
Q
L
T
K
--
I
---------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
--
S
M
-----
P
E
-
I
N
DA
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
I
R
F
E
G
N
D
T
S
K
D
A
V
L
R
R
E
M
R
Q
M
E
G
A
W
L
G
S
D
L
V
D
Q
G
K
E
R
----
L
----
N
R
L
G
F
F
E
T
-
V
D
T
D
-
T
--
Q
R
V
P
G
--
S
--
P
D
Q
V
D
V
V
Y
--
K
V
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
51.16
17%
-43
- C2 -
2X8X
-
?
X:
[67-301]
-----------------------
D
E
P
K
V
L
I
A
E
V
V
V
E
G
A
T
P
----
E
L
E
Q
L
V
Y
Q
V
I
S
T
R
P
G
S
T
T
T
R
T
Q
L
Q
Q
D
T
N
A
I
F
A
T
G
F
F
A
D
V
N
A
V
P
R
--
D
T
PLG
V
R
-
I
T
F
V
V
R
P
Y
P
V
L
R
A
V
Q
V
A
G
N
Q
V
---
L
-
T
Q
E
K
V
N
E
I
-----
F
---
A
P
--
Q
I
G
R
T
L
N
L
R
E
L
Q
A
G
I
E
K
I
N
T
F
Y
R
D
N
G
Y
I
L
G
Q
V
V
G
T
P
Q
V
D
-
P
D
G
V
V
T
L
Q
V
A
E
G
V
V
E
Q
V
T
Y
R
F
L
N
K
E
G
E
P
T
KQR
T
R
D
F
V
I
S
R
E
M
D
T
Q
P
G
V
V
---------------
L
N
Q
K
T
V
Q
A
D
L
R
R
L
F
E
L
----
G
L
F
E
D
V
Q
--
V
A
--
L
E
P
G
--
Q
-
N
P
R
R
V
N
L
I
L
N
I
K
E
R
N
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
50.96
15%
-58
- C2 -
3MC9
-
?
A:
[217-381]
-----------------------
T
E
P
R
V
L
V
S
E
V
L
V
R
P
Q
S
G
QLT
P
E
L
E
T
Q
V
Y
N
V
I
R
T
Q
P
G
R
T
T
T
R
S
Q
L
Q
E
D
I
N
A
I
F
G
T
G
F
F
S
N
V
Q
A
S
P
E
D
T
P
L
---
G
V
R
V
S
F
I
V
Q
P
N
P
V
L
S
K
V
E
I
Q
A
N
P
-PSV
L
P
Q
A
-
T
A
D
E
I
-----
F
---
R
A
--
Q
Y
G
K
I
L
N
L
R
D
L
Q
E
G
I
K
E
L
T
K
R
Y
Q
D
Q
G
Y
V
L
A
N
V
V
G
A
P
Q
V
S
---
E
N
G
V
V
T
L
Q
V
A
E
G
V
V
---
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
48.34
27%
-19
- C2 -
3Q6B
-
BAMA_ECOLI
A:
[284-419]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
Q
L
T
--
K
I--------
E
P
G
E
L
Y
N
G
T
K
V
T
K
M
E
D
D
I
K
K
L
L
G
R
Y
G
Y
A
Y
P
------
R
--
V
Q
S
M
P
E
-----
I
N
-
D
A
--
D
K
T
V
K
L
R
V
N
V
D
A
G
N
R
F
Y
V
R
K
I
R
F
E
G
N
D
T
S
K
D
A
V
L
R
R
E
M
R
Q
M
E
G
A
W
L
G
S
D
L
V
D
Q
G
K
E
R
----
L
----
N
R
L
G
F
F
E
T
-
V
D
T
D
-
T
--
Q
R
--
V
--
P
--
G
S
P
D
Q
V
D
V
--
V
Y
K
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
48.31
23%
-4
- C2 -
4N75
-
?
A:
[12-381]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
S
F
Q
A
G
V
------
Q
Q
D
N
W
L
G
T
G
Y
A
V
G
I
N
G
T
K
N
D
Y
Q
T
Y
A
E
L
S
V
--
T
N
P
Y
F
T
V
D
G
V
S
L
G
G
R
L
F
Y
N
D
F
Q
A
D
D
----
A
D
L
S
D
---
Y
T
N
K
S
Y
G
T
D
V
T
L
G
F
P
I
--
N
E
Y
N
S
L
R
A
G
L
G
Y
V
H
N
S
-
L
S
N
---
M
--
Q
P
Q
V
A
M
W
R
---
Y
L
----------
Y
S
M
G
E
H
-
P
S
T
S
DQD
N
S
F
K
T
D
D
F
T
F
N
Y
G
W
T
----
Y
N
K
L
D
R
G
Y
F
P
T
D
G
S
R
V
N
L
T
G
K
V
T
I
P
G
S
D
N
E
Y
Y
K
V
T
L
D
T
A
T
Y
V
P
----
I
D
D
D
HK
W
V
V
L
G
R
T
R
W
G
Y
G
D
G
L
G
G
K
E
M
P
F
Y
E
N
F
Y
A
G
G
-
S
S
T
V
R
G
F
Q
S
N
T
I
G
P
K
AVYFP
H
Q
A
S
N
Y
D
P
D
YDYECATQDG
A
--------
K
D
L
--
C
K
S
DD
A
V
G
G
N
A
M
A
V
A
S
L
E
F
I
T
P
T
P
F
I
S
--------
V
R
T
S
F
F
W
D
M
G
T
V
W
D
T
N
W
D--------
S
S
---
Q
Y
S
G
YP---
D
Y
S
D
P
S
N
---
I
R
M
S
A
G
I
A
L
Q
W
M
S
P
L
G
---
P
L
V
F
S
Y
A
Q
P
F
K
K
Y
D
G
D
K
A
E
Q
F
Q
F
N
I
G
K
T
W
9
PsiBlast_PDB
47.45
29%
-9
- C2 -
2X8X
-
?
X:
[158-301]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
K
V
N
E
I
F
A
--
P
---------
Q
I
G
R
T
L
N
L
R
E
L
Q
A
G
I
E
K
I
N
T
F
Y
R
D
N
G
Y
I
L
G
QVVGTP
Q
--
V
D
--
P
D
GVVTL
Q
V
-
A
E
--
G
V
V
E
Q
V
T
Y
R
-------
F
L
N
K
E
G
E
P
T
K
Q
R
T
R
D
F
V
I
S
R
E
M
D
T
Q
P
G
V
V
L
N
Q
K
T
V
Q
A
D
L
R
R
----
L
----
F
E
L
G
L
F
E
D
-
V
Q
V
A
L
E
--
P
G
--
Q
--
N
--
P
R
R
V
N
L
I
L
--
N
I
K
E
R
N
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------