@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0067: (2015-11-28 )
MKQYTFRIDNKDPLYKKLIKLPTAYYRLKHDGNKHNIHSNNNVILEIGNNTNGVKLRWENDKIVLHKGSSALY
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--......-..20.---..-.....30----...-----.....40-----..--......50------.--....----.-...60---.......-..70..--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
Q
Y
T
F
R
IDNK--
D
P
L
Y
K
K
-
L
I
KLP---
T
A
-
Y
Y
R
L
KHD----GNK-----HNIHSNN-----
N
V
--
I
L
E
IGNN-------T--N
G
V
K
----
L
-
R
WEN----
D
K
I
V
L
HK-GSSALY--------------------------------------------------------
20
Fugue
83.40
24%
-86
- C8 -
3VSM
1
OE66_NPVAC
A:
[27-659]
N
I
Q
E
L
Q
N
F
E
R
W
F
K
N
N
L
S
Y
S
F
S
Q
KA
E
K
V
V
NPN
R
N
W
N
DNTVFDNLSPWTS
V
P
D
F
G
T
V
C
H
T
L
I
G
Y
C
V
R
Y
N
NTSDTLYQN
P
E
L
A
Y
N
L
I
N
G
L
R
I
I
C
S
K
LPDPPPHQQAPWGPVADWYHFTI
T
M
P
E
V
F
M
N
I
T
I
V
L
N
ETQH
Y
D
E
A
A
S
L
T
R
Y
W
LGLYLPTAVNSMG
W
H
R
T
A
G
N
S
M
R
M
G
V
P
Y
T
Y
S
Q
M
L
R
GYS
L
A
Q
I
R
Q
E
Q
G
I
Q
E
I
L
N
T
I
AFPYVTQGNGLHVDS
I
Y
I
D
HIDVRAY
G
Y
L
I
N
S
YFT
F
A
Y
Y
T
Y
Y
FGDEVIN
T
V
G
L
T
R
A
I
E
N
VGSPEGVVVPGVMSRNGTLYSNVIGNFITYPL
A
V
H
S
ADYS
K
V
L
T
K
L
S
KT
Y
Y
G
S
V
V
G
V
T
NRLAY
Y
E
S
D
PTNNIQ
A
P
L
W
T
MAR
R
I
W
N
RRGRI
I
N
Y
N
ANTVSFESGIILQSLNG
I
M
R
I
P
S
GTT
S
T
Q
S
F
R
P
T
I
G
Q
T
A
I
A
K
T
DT
A
G
A
I
L
V
Y
A
K
F
AEMNN
L
Q
F
K
S
C
T
L
F
Y
DH
G
M
F
Q
L
Y
Y
NIGVEPNSLNN
T
N
G
R
V
I
VLSRDTSVNTNDLS
F
E
A
Q
R
I
N
N
NNSSEGTTFNG
V
V
C
H
R
V
P
I
T
N
I
N
V
P
S
L
T
V
R
S
PNSS
V
E
L
V
E
Q
I
I
S
F
Q
T
M
Y
T
A
T
-------------------
A
---
S
A
-
C
Y
K
L
N
V
E
----
G
H
S
DS
L
R
A
F
R
V
N
S
D
E
-----
N
I
--
Y
V
N
V
G
N
------------
G
V
K
----
A
-
L
F
N
Y
----
P
W
V
M
V
K
E
-
N
N
K
V
S
F
M
S
ANEDTTIP
F
S
V
I
M
N
S
F
T
S
I
GEPA
L
Q
Y
S
P
SNCFVYGN
G
F
K
L
NNSTF
D
L
Q
F
I
F
E
I
V
14
Fugue
78.32
19%
-19
* C7 *
4LVN
1
?
P:
[13-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
R
L
I
V
S
E
N
H
A
TT
P
S
F
F
Q
E
-
S
L
L
E
P
---
D
V
-
L
S
F
L
E
S
K
----
G
N
L
-----
S
N
L
K
N
I
N
-----
S
M
--
I
I
E
L
K
E
D
-------
T
--
T
D
D
E
----
L
-
I
-
S
Y
----
I
K
I
L
E
E
K
-
G
A
L
I
E
S
DKLVSAD-------------------------------------------------
12
HHSearch
75.97
25%
-57
* C8 *
1LPJ
-
RET7_HUMAN
A:
[28-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
R
K
-
I
A
K
L
L
---
K
P
-
Q
K
V
I
E
Q
N
----
G
D
S
-----
F
T
I
H
T
N
S
SL
R
N
Y
F
V
--
K
F
K
V
G
E
E
F
D
E
DNRG
L
--
D
N
R
K
CK
S
L
V
-
I
W
D
N
----
D
R
L
T
C
I
Q
-
K
G
E
K
K
N
--------------------------------------------------------
13
Fugue
65.36
18%
-39
- C7 -
1L7Y
-
UFM1_CAEEL
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSGGTAATTA
G
S
K
V
T
F
K
I
T
L
T
S
D
--
P
K
L
P
F
K
-
V
L
S
V
P
EST
P
F
-
T
A
V
L
K
F
A
----
A
E
E
-----
F
K
V
P
A
A
T
-----
S
A
--
I
I
--
T
N
D
-------
G
--
V
G
V
N
----
P
-
A
Q
P
A
----
G
N
I
F
L
K
H
-
G
S
E
L
R
L
I
P
R
DRVGH------------------------------------------------
18
Fugue
65.04
26%
-11
- C3 -
4PE2
2
MALE_ECOLI
A:
[3-498]
-------------------------------------------------------------------------------------------------------------------------------IEEG
K
L
V
I
W
I
N
GDKG
Y
N
G
L
A
E
V
G
K
K
F
E
K
D
TG
I
K
V
T
V
E
H
P
D
K
L
E
E
K
F
P
Q
V
A
A
T
GDGPD
I
I
F
W
AHDR
F
G
G
Y
A
Q
S
GLL
A
E
I
T
P
D
K
A
F
Q
D
K
L
Y
P
F
T
W
D
A
V
RYNGKLI
A
Y
P
I
A
V
E
A
L
S
L
I
Y
N
KDLLPNPPKTWEE
I
P
A
L
D
K
E
L
K
A
K
GKSALMFNLQEPYFT
W
P
L
I
A
A
D
G
G
Y
A
F
KYENGKYDIKDVGVDN
A
G
A
K
A
G
L
T
F
L
V
D
L
I
K
N
KHMNADTD
Y
S
I
A
E
A
A
F
N
K
GETA
M
T
I
N
G
PWA
W
S
N
I
D
T
S
KVN
Y
G
V
T
V
L
P
T
F
KGQPSK
P
F
V
G
V
L
S
A
G
I
NAASPN
K
E
L
A
K
E
F
L
E
NYLLT
D
E
G
L
E
A
V
N
K
D
KPLGAVAL
K
S
Y
E
E
E
L
AKD
P
R
I
A
A
T
M
E
N
A
Q
K
G
EIMPNIPQ
M
S
A
F
W
Y
A
V
R
T
A
V
I
N
A
A
S
GRQT
V
D
E
A
L
K
D
A
Q
T
N
A
AASN
I
N
K
A
K
V
A
S
V
E
S
D
Y
S
S
V
K
S
A
A
L
S
Y
Y
S
D
K
--
N
T
--
M
P
P
S
G
E
-
L
D
A
L
E
---
T
Y
-
M
D
T
L
P
D
K
ADI
G
G
G
Y
-----
K
L
L
L
V
N
N
-----
K
L
--
A
L
K
I
G
D
G
-------
T
AA
D
S
V
T
----
L
T
K
A
Q
I
----
E
K
L
L
S
D
I
-
G
P
K
K
I
Y
TENTLKTELQKNSTLKDG
T
L
Y
I
V
LIDN-----------------------------
6
HHSearch
62.58
33%
42
- C- -
1M0F
-
?
B:
[102-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
---
A
E
-
F
Y
R
F
H
D
A
----
E
V
N
-----
T
F
G
Y
F
--------------------------------------------------------------------------------------------------------------------
15
Fugue
62.52
20%
13
- C7 -
1AG2
-
PRIO_MOUSE
A:
[124-226]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLGGYMLGSAMS
R
P
M
I
H
F
G
N
D
W
E
--
D
R
Y
Y
R
E
N
M
Y
R
Y
P
---
N
Q
V
Y
Y
R
P
V
D
Q
----
Y
S
N
-----
Q
N
N
F
V
H
D
-----
C
V
--
N
I
T
I
K
Q
H
-------
T
--
V
T
T
T
----
T
-
K
G
E
N
F
T
E
T
D
V
K
M
M
E
R
-
V
V
E
Q
M
C
V
T
Q
YQKESQAYY--------------------------------------------
16
Fugue
55.89
18%
14
- C7 -
1BW5
-
A:
[1-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
T
T
R
V
R
T
V
L
N
-----
E
K
Q
-
L
H
T
L
R
---
T
C
-
Y
A
A
--------
N
P
R
-----
P
D
A
L
M
K
E
-----
Q
L
--
V
E
M
T
G
L
S
-------
P
--
R
V
I
R
----
V
-
W
F
Q
N
----
K
R
C
K
D
K
K
-
R
S
I
M
M
K
--------------------------------------------------------
4
HHSearch
53.28
14%
-82
- C9 -
1RQ8
-
?
A:
[61-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
A
E
T
L
S
E
A
-------
T
--
R
S
E
L
----
V
-
Q
V
I
G
----
S
M
I
V
I
Y
R
-
E
S
K
E
N
K
--------------------------------------------------------
22
Fugue
47.76
15%
-15
- C5 -
3FN2
1
?
A:
[6-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YT
M
Q
R
D
N
Q
K
T
L
A
V
Y
M
F
E
E
I
N
R
D
V
E
Y
L
S
G
R
L
S
E
--
K
E
L
K
D
K
-
Y
R
Y
Y
G
---
R
G
-
Y
V
R
I
T
D
K
----
D
G
Q
-----
V
I
T
Y
E
D
G
-----
S
V
QD
K
T
V
F
L
T
N
-------
E
--
G
A
N
K
----
L
-
G
W
K
L
----
E
F
L
I
D
E
K
M
F
E
E
E
I
L
--------------------------------------------------------
2
PsiBlast_PDB
43.53
34%
-42
- C2 -
3IYJ
-
VL1_BPV1
F:
[308-339]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
W
L
F
R
A
Q
----
G
M
N
-----
N
G
I
A
W
N
N
-----
L
L
--
F
L
T
V
G
D
N
-------
T
--
R
G
T
N
----
L
-
T
I
S
V
----
A
S
D
G
T
P
L
-
T
E
Y
D
S
S
--------------------------------------------------------
17
Fugue
37.76
17%
21
- C7 -
1ACW
-
KAX81_ANDMA
A:
[1-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
-----
C
E
--
D
C
P
E
H
C
S
-------
T
--
Q
K
A
Q
----
A
-
K
C
D
N
----
D
K
C
V
C
E
P
-
I
-------------------------------------------------------------
8
HHSearch
35.15
59%
-51
- C6 -
3WX4
-
ARN_BPT4
A:
[9-25]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
Y
T
F
K
I
D
I
L
--
E
K
L
Y
K
F
-
L
P
N
L
Y
---
H
S
-
I
V
N
E
L
V
E
----
E
L
H
-----
L
E
N
N
D
F
L
-----
I
G
--
T
Y
K
D
L
S
K
-------
A
--
G
Y
F
Y
----
V
-
I
P
A
P
----
G
K
N
I
D
D
V
-
L
K
T
I
M
I
--------------------------------------------------------
1
PsiBlast_PDB
33.49
52%
31
* C6 *
1LF1
-
?
A:
[131-149]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
--
I
Y
E
I
A
N
E
-------
P
--
N
G
S
D
----
V
-
T
W
D
N
----
Q
I
K
P
Y
A
E
-
E
V
I
P
V
I
--------------------------------------------------------
10
HHSearch
28.59
19%
37
- C9 -
2RAQ
2
?
A:
[36-62]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
N
-----
I
T
--
L
M
E
I
D
K
E
-------
T
--
E
N
I
K
----
V
-
T
I
Q
G
----
N
D
L
D
F
D
E
-
I
T
R
A
I
E
--------------------------------------------------------
9
HHSearch
28.47
19%
30
* C9 *
3BPD
1
?
A:
[37-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
-----
I
H
--
L
S
E
I
D
Q
A
-------
T
--
E
N
I
K
----
I
-
T
I
L
G
----
N
N
L
D
Y
E
Q
-
I
K
G
V
I
E
--------------------------------------------------------
11
HHSearch
22.34
17%
-66
- C4 -
1VCH
-
?
A:
[2-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
Y
P
I
T
V
G
G
V
--
T
R
H
V
P
L
-
I
E
P
L
P
---
G
R
-
R
I
P
L
V
E
F
----
L
G
D
-----
P
E
F
T
R
A
A
-----
A
E
--
A
L
R
P
L
V
P
-------
K
--
E
A
E
I
----
L
-
F
T
T
E
----
T
S
P
I
P
L
T
-
H
V
L
A
E
A
--------------------------------------------------------
7
HHSearch
10.10
42%
153
- C1 -
2BRQ
1
ITB7_HUMAN
C:
[9-16]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
Y
K
S
-
A
I
T
T
T
---
I
N
-
P
R
------------------------------------------------------------------------------------------------------------------------------------------