@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0090: (2015-11-28 )
MHSKKSEGRIYFAIEVDIFRYIATYYMLCEQKGSQTEEGVVHNDKYKEQRKKLYGKDEEQKGNRK
Atome Classification :
(14 SA)
--------------.........10---....---.....20-----------------------.....-.-------------..30........40........50-----------.........60....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------MHSKKSE
G
R
I
----
Y
F
A
I
---
E
V
D
I
F
R
Y
-----------------------
I
A
T
Y
Y
-
M
-------------
L
C
EQKGSQTEEGVVH
N
D
K
Y
K
E
Q
R
------------
K
K
LYGK
D
E
E
QKGNRK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
81.23
21%
-7
- C4 -
4RKN
14
MCCA_WOLSU
A:
[43-702]
MQMT
K
E
A
R
E
I
I
A
HP
K
G
T
K
E
S
R
G
V
I
S
L
Q
D
Y
I
V
E
---
E
Q
A
M
Y
D
W
-----------------------
L
F
K
N
H
-
P
-------------
I
F
T
K
Y
G
G
K
T
V
G
K
L
V
V
K
D
R
G
E
E
W
I
------------
E
E
G
R
G
N
D
F
S
K
A
S
K
R
S
GGEGFSSMMYRVARNSTLQYPNKFIG
P
E
K
C
G
E
CH
P
A
Q
Y
E
T
W
S
R
SRHATTIRFPGEHPEVNNKLNDPVFDKDTASILPQGITPDVVYCTVGHIR
T
K
F
G
F
F
D
AWLLRGT
Y
H
V
E
GGLLKNGT
G
Q
I
V
A
G
GNQWQRTWALNLS
P
E
V
A
K
K
I
K
K
W
V
PDFPVTLEEYGDNGGYVRG
L
A
S
Y
AAKYKKSMSFQASTSYCEVCH
P
W
K
F
DFKN
E
S
E
F
Y
A
A
LGN
A
K
E
L
Q
K
H
TISKGVS
C
E
E
C
H
GAGGHLEGGS
G
L
L
I
S
NCERCHQR
F
S
Y
S
P
D
L
M
R
N
N
PLNAGKPDLALSSKFKSM
G
P
G
C
GS
E
G
S
Q
T
Y
FT
A
H
Y
E
K
GMRCATCHDPHDVTGN
V
T
G
E
KGIKGVSYNSEQGYLSSL
Y
S
K
P
KLKKE
C
T
D
C
H
K
E
Q
A
Y
I
Q
S
KADTHSKNSCASCHMPFMMSCENFYAIQFQDQAGFDTQRRAHIW
K
I
D
V
D
PARKS
L
V
A
G
STSKDPRDGKD
W
H
F
E
R
N
EEG
R
N
F
V
D
LMWA
C
A
R
T
T
WAD
K
D
Q
A
E
A
KGCHSPVVSELKETLHFKD
Q
K
Q
V
Y
N
E
V
M
G
W
Q
T
P
V
K
D
K
F
T
Q
V
K
V
G
I
Q
G
L
Y
S
L
LEVKKLA
P
S
D
K
T
R
V
Y
E
L
I
E
K
A
Q
D
T
V
D
L
I
E
K
D
GSWGMHG
F
K
Y
T
K
Q
R
L
D
A
A
V
E
Y
I
N
E
A
Q
R
I
M
K
K
S
L
19
Fugue
71.52
18%
2
- C7 -
4Q63
9
?
A:
[9-101]
--------------
Y
F
R
L
K
N
H
G
E
I
----
N
A
S
L
DN
N
S
I
E
I
V
E
I
SSN
G
A
V
V
V
K
Q
KTDIPK
E
G
V
L
K
L
Q
I
H
N
F
I
M
E
-------------
L
C
Y
E
V
I
R
A
E
D
N
N
I
V
L
H
F
T
K
E
D
E
T
------------
N
K
L
F
L
V
L
K
R
L
R
D
E
R
K
N------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
62.44
14%
-15
* C7 *
2DAJ
-
A:
[1-91]
---------------
G
S
S
G
S
S
G
E
K
----
T
V
R
V
---
V
I
N
F
K
K
T
-----------------------
Q
K
T
I
V
-
R
V
S
PHASLQEL
A
P
I
I
C
S
K
C
E
F
D
P
L
H
T
L
L
L
K
D
Y
Q
S
Q
E
P
L
D
LTKSLNDLGL
R
E
L
Y
A
M
D
V
N
R
E
S
G
P
S
S
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
57.49
15%
-29
- C3 -
4A94
4
MCPI_NERVS
C:
[3-53]
------------------
V
P
D
D
R
P
----
C
I
N
P
---
G
R
C
P
L
V
P
-----------------------
D
A
T
C
T
-
F
-------------
V
C
K
A
A
D
N
D
F
G
Y
E
C
Q
H
V
W
T
F
E
G
Q
R
------------
V
G
C
Y
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
55.73
19%
31
- C5 -
2C55
-
A:
[1-52]
--------------
L
Q
S
R
P
E
P
T
--------
A
P
---
P
E
E
S
F
R
F
-----------------------
G
E
E
-------------------
T
T
T
P
S
Q
K
Q
E
P
I
D
K
E
L
Y
P
L
A
S
L
------------
R
S
L
F
G
S
D
P
S
S
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
44.78
22%
76
* C6 *
1NYB
1
REGN_BPPH3
A:
[1-22]
----------------------------------------------------------------------------------------------
E
S
K
G
T
A
K
S
R
Y
K
A
R
R
------------
A
E
L
I
A
E
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
44.46
36%
8
- C2 -
3PL0
2
?
A:
[142-169]
-----------------------------
W
Y
I
---
E
A
H
P
F
R
I
-----------------------
D
T
E
-------------------
G
G
V
G
R
P
T
P
E
G
A
-
H
R
D
G
V
D
F
V
A
------------
V
V
F
I
G
R
Q
G
V
R
G
G
E
T
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.14
18%
-180
- C6 -
2NZ0
-
KCND3_HUMAN
B:
[73-94]
-------------------
D
T
K
E
Y
----
F
F
D
R
---
D
P
E
V
F
R
C
-----------------------
V
L
N
F
Y
-
R
-------------
T
G
K
L
H
Y
P
R
Y
E
C
I
S
A
Y
D
D
E
L
A
F
Y
G
------------
I
L
P
E
I
I
G
D
C
C
Y
E
E
Y
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
31.40
22%
-155
- C6 -
3KVT
-
?
A:
[44-66]
-------------------
V
L
N
E
Y
----
F
F
D
R
---
H
P
G
V
F
A
Q
-----------------------
I
I
N
Y
Y
-
R
-------------
S
G
K
L
H
Y
P
T
D
V
C
G
P
L
F
E
E
E
L
E
F
W
G
------------
L
D
S
N
Q
V
E
P
C
C
W
M
T
Y
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
28.16
38%
123
- C6 -
1ERP
-
A:
[1-24]
-----------------------------------------------------------------------
D
-------------
L
C
E
Q
S
A
L
Q
C
N
E
Q
G
C
H
N
F
C
S
P
E
D
K
------------
P
G
C
L
G
M
V
W
N
P
E
L
C
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
25.58
45%
5
- C1 -
3GD0
-
?
A:
[112-122]
-------------------
F
S
G
R
I
----
Y
F
S
Y
---
G
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
20.57
29%
79
- C6 -
1ERC
-
A:
[1-17]
-----------------------------------------------------------------------
D
-------------
A
C
E
Q
A
A
I
Q
C
V
E
S
A
C
E
S
L
C
T
E
G
E
D
------------
R
T
G
C
Y
M
Y
I
Y
S
N
C
P
P
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
15.24
29%
72
- C6 -
1ERD
-
A:
[3-19]
-----------------------------------------------------------------------
M
-------------
T
C
E
Q
A
M
A
S
C
E
H
T
M
C
G
Y
C
Q
G
P
L
Y
M
------------
T
C
I
G
I
T
T
D
P
E
C
G
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
14.41
25%
-81
- C6 -
2D7E
-
PRIA_ECOLI
A:
[78-89]
------------------------------------
W
R
L
L
L
W
-----------------------
A
A
D
Y
Y
-
H
-------------
H
P
I
G
D
V
L
F
H
A
L
P
I
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------