@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0094: (2015-11-28 )
MSSNNIIESFGRDQLENFINYKNKIGIGALDIALNSGNKKAIEVLKSYGADIENRVDGESRLLRALKEGNIEKMELLLS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------.........10.......--.20-.....--....30........40........50..--..-..---..60........70...-.....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------MSS
N
N
I
I
E
S
F
G
R
D
Q
L
E
N
F
--
I
N
--
Y
KNKI--GI
G
A
L
D
I
A
LNSG
N
K
K
A
I
E
V
L
K
S
YGA
D
I
E
--NR-VD---
G
E
S
R
L
L
R
A
L
K
EG
N
I
E
K
M
-
E
L
LLS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
81.96
35%
-31
- C2 -
4GMR
-
?
A:
[21-91]
-------------------------------------------------------------------------------------------
K
D
L
L
E
N
G
AD
V
N
--
A
S
D
S
D
--
G
K
T
P
L
H
L
A
A
E
N
G
H
K
E
V
V
K
L
L
L
S
Q
G
A
D
P
N
--
A
K
D
S
D
---
G
K
T
P
L
H
L
A
A
E
N
G
H
K
E
V
V
-
K
L
L
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66
HHSearch
74.54
30%
-43
- C2 -
1OY3
-
IKBB_MOUSE
D:
[240-294]
------------------------------------------------------------------------------------------------------------
C
--
G
R
T
P
L
H
L
A
V
E
A
Q
A
A
S
V
L
E
L
L
L
K
A
G
A
D
P
T
--
A
R
M
Y
G
---
G
R
T
P
L
G
S
A
L
L
R
P
N
P
I
L
A
-
R
L
L
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
65.87
30%
-52
- C2 -
3J5P
-
TRPV1_RAT
A:
[1-564]
------------LYD
R
R
S
I
F
D
A
V
A
Q
SNCQELES
L
L
P
F
L
Q
R
S
KKRLTDSEFKDPETGKT
C
L
L
K
A
M
L
N
LHNGQND
T
I
A
L
L
L
D
V
A
R
K
T
-------
D
S
L
K
Q
F
--
V
N
AS
Y
T
D
S
Y
YK
G
Q
T
A
L
H
I
A
I
E
R
R
N
M
T
L
V
T
L
L
V
E
N
G
A
D
V
Q
--
A
A
-
A
N
---
G
--
D
F
F
K
K
T
K
G
R
P
G
F
Y
F
G
E
L
P
L
S
L
A
A
C
T
NQ
L
A
I
V
K
F
L
L
Q
NSWQPADISARDSVGNT
V
L
H
A
L
V
E
V
ADNT
V
D
N
T
K
F
V
T
S
M
Y
N
E
I
L
I
L
G
A
K
L
HPTLKLEEITNRKGLT
P
L
A
L
A
A
S
S
GK
I
G
V
L
A
Y
I
L
Q
R
E
I
H
E
PECRHLSR
K
F
T
E
W
AYGP
V
H
S
S
L
Y
DLSCIDTCEKNS
V
L
E
V
I
A
Y
SSSETPNRHDMLLV
E
P
L
N
R
L
L
Q
D
K
W
D
R
F
V
K
R
I
F
Y
F
N
F
F
V
Y
C
L
Y
M
I
I
F
T
A
A
A
Y
Y
RPVEGLPPYKLKNT
V
G
D
Y
F
R
V
T
G
E
I
L
S
V
S
G
G
V
Y
F
F
F
R
G
I
Q
Y
F
L
Q
R
RPSVDS
Y
S
E
I
L
F
F
V
Q
S
L
F
M
L
V
S
V
V
L
Y
F
S
QRKE
Y
V
A
S
M
V
F
S
L
A
M
G
W
T
N
M
LYYTRGF
Q
Q
M
G
I
Y
A
V
M
I
E
K
M
I
LR
D
L
C
R
F
M
F
V
Y
L
V
F
L
F
G
F
S
T
A
V
V
T
L
I
EDGKYNS
L
Y
S
T
C
L
E
L
F
K
F
T
I
GMGDLEFTENYDF
K
A
V
F
I
I
L
L
L
A
Y
V
I
L
T
Y
I
L
L
L
N
M
L
I
A
L
M
G
E
T
V
N
K
I
A
Q
E
S
K
N
I
W
K
L
Q
R
A
I
T
I
L
D
T
E
K
S
F
LKCMRKA
8
PsiBlast_PDB
64.98
37%
-29
- C2 -
4HQD
-
?
A:
[63-124]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
S
D
--
G
R
T
P
L
H
Y
A
A
K
E
G
H
K
E
I
V
K
L
L
I
S
K
G
A
D
V
N
--
A
K
D
S
D
---
G
R
T
P
L
H
Y
A
A
K
E
G
H
K
E
I
V
-
K
L
L
I
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
64.15
37%
-35
- C2 -
2XEH
3
?
C:
[28-88]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
D
--
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
E
V
L
L
K
A
G
A
D
V
N
--
A
K
D
K
D
---
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63
HHSearch
62.51
30%
-39
- C2 -
3UTM
-
TNKS1_MOUSE
A:
[541-604]
-----------------------------------------------------------------------------------------------
G
A
N
--
V
N
--
E
K
N
K
D
--
F
M
T
P
L
H
V
A
A
E
R
A
H
N
D
V
M
E
V
L
H
K
H
G
A
K
M
N
--
A
L
D
S
L
---
G
Q
T
A
L
H
R
A
A
L
A
G
H
L
Q
T
C
-
R
L
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
62.16
26%
-43
- C2 -
1IKN
-
IKBA_HUMAN
D:
[73-292]
DGDSFLHLAIIHEEKALTMEVIRLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL
A
S
V
G
V
L
T
Q
S
C
T
T
P
H
L
H
S
I
--
L
K
--
A
T
N
Y
N
--
G
H
T
C
L
H
L
A
S
I
H
G
Y
L
G
I
V
E
L
L
V
S
L
G
A
D
V
N
AQ
E
P
-
C
N
---
G
R
T
A
L
H
L
A
V
D
L
Q
N
P
D
L
V
-
S
L
L
L
K
CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.55
37%
-39
- C2 -
2QYJ
4
?
A:
[40-100]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
D
--
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
E
V
L
L
K
A
G
A
D
V
N
--
A
K
D
K
D
---
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
61.00
37%
-38
- C2 -
2XEH
3
?
B:
[28-88]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
D
--
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
E
V
L
L
K
A
G
A
D
V
N
--
A
K
D
K
D
---
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.52
34%
-45
- C2 -
4K5B
-
?
A:
[40-100]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
R
F
--
G
W
T
P
L
H
L
A
A
M
E
G
H
L
E
I
V
E
V
L
L
K
T
G
A
D
V
N
--
A
W
-
A
D
L--
G
T
T
P
L
H
L
A
A
M
K
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
59.16
35%
-42
- C2 -
2P2C
-
?
P:
[40-100]
----------------------------------------------------------------------------------------------------
V
N
--
A
T
D
W
L
--
G
H
T
P
L
H
L
A
A
K
T
G
H
L
E
I
V
E
V
L
L
K
Y
G
A
D
V
---
N
A
-
W
D
NY-
G
A
T
P
L
H
L
A
A
D
N
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.79
37%
-34
- C2 -
2XEH
3
?
A:
[28-88]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
D
--
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
E
V
L
L
K
A
G
A
D
V
N
--
A
K
D
K
D
---
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
58.25
33%
-34
- C2 -
4LNU
1
?
D:
[40-100]
----------------------------------------------------------------------------------------------------
V
N
--
A
T
D
A
S
--
G
L
T
P
L
H
L
A
A
T
Y
G
H
L
E
I
V
E
V
L
L
K
H
G
A
D
V
---
N
A
-
I
D
IM-
G
S
T
P
L
H
L
A
A
L
I
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
PsiBlast_CBE
58.09
31%
-31
- C2 -
1N0R
2
?
A:
[28-88]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
N
--
G
R
T
P
L
H
L
A
A
R
N
G
H
L
E
V
V
K
L
L
L
E
A
G
A
D
V
N
--
A
K
D
K
N
---
G
R
T
P
L
H
L
A
A
R
N
G
H
L
E
V
V
-
K
L
L
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
57.89
33%
-38
- C2 -
1K1B
-
BCL3_HUMAN
A:
[230-288]
---------------------------------------------------------------------------------------------------------
R
N
Y
D
--
G
L
T
A
L
H
V
A
V
N
T
E
C
Q
E
T
V
Q
L
L
L
E
R
G
A
D
I
D
---
A
-
V
D
IKS
G
R
S
P
L
I
H
A
V
E
N
N
S
L
S
M
V
-
Q
L
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
57.89
35%
-42
- C2 -
2V5Q
-
?
C:
[73-133]
----------------------------------------------------------------------------------------------------
V
D
--
A
A
D
V
Y
--
G
F
T
P
L
H
L
A
A
M
T
G
H
L
E
I
V
E
V
L
L
K
Y
G
A
D
V
---
N
A
-
F
D
MT-
G
S
T
P
L
H
L
A
A
D
E
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.18
37%
-40
- C2 -
2BKK
-
?
B:
[73-133]
----------------------------------------------------------------------------------------------------
V
N
--
A
S
D
K
S
--
G
W
T
P
L
H
L
A
A
Y
R
G
H
L
E
I
V
E
V
L
L
K
Y
G
A
D
V
---
N
A
-
M
D
YQ-
G
Y
T
P
L
H
L
A
A
E
D
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
57.13
31%
-30
- C2 -
1N0Q
1
?
B:
[28-88]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
N
--
G
R
T
P
L
H
L
A
A
R
N
G
H
L
E
V
V
K
L
L
L
E
A
G
A
D
V
N
--
A
K
D
K
N
---
G
R
T
P
L
H
L
A
A
R
N
G
H
L
E
V
V
-
K
L
L
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
57.13
37%
-40
- C2 -
3NOC
-
?
D:
[73-133]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
S
L
--
G
V
T
P
L
H
L
A
A
R
R
G
H
L
E
I
V
E
V
L
L
K
N
G
A
D
V
---
N
A
-
S
D
SH-
G
F
T
P
L
H
L
A
A
K
R
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.68
37%
-32
- C2 -
2XEE
-
?
A:
[40-100]
----------------------------------------------------------------------------------------------------
V
N
--
A
K
D
K
D
--
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
E
V
L
L
K
A
G
A
D
V
N
--
A
K
D
K
D
---
G
Y
T
P
L
H
L
A
A
R
E
G
H
L
E
I
V
-
E
V
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------