@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0105: (2015-11-28 )
MLIVPKEMRDYTIGSGRSLLDIITEYFQELCEKSGFIKKEYRIERNVDNTFVLDRRVNEPAVTNNRKEIS
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--------.-..10........20.-....----.---..30.....--...40.--.-.....--.---50--........60...------.....70--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLIVPK--------E-MR
D
Y
TIGS
G
R
S
L
L
D
I
-
I
T
E
Y
----
F
---
Q
E
L
C
E
KSGF--I
K
K
E
Y
R
--
I
-ERNVD--N---
T
F
--
V
L
DRRVNEPAVTN------NRKEIS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
88.67
31%
-129
- C3 -
4ZGL
-
YHIT_HELPY
A:
[38-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
I
P
K
--------
Q
S
I
Q
D
F
N
-
G
I
T
P
E
L
M
A
Q
-
M
T
S
F
----
I
---
F
E
V
V
E
K
L
G
I
--
K
E
K
G
Y
K
--
L
-
L
T
N
V
G
--
K
---
N
A
--
G
Q
E
V
M
H
L
H
F
H
I
L
S
------
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
67.19
21%
-16
- C2 -
4ZFV
4
?
A:
[10-445]
N
V
L
D
F
T
V
L
G
L
N
S
G
TSMD
G
I
D
C
A
L
C
H
F
Y
Q
KTPDA
P
M
E
F
E
LL
E
Y
G
E
V
P
LA
Q
P
I
K
Q
R
V
M
R
M
I
L
E
DTTS
P
S
E
L
S
E
V
N
V
I
L
G
E
H
F
A
D
A
V
R
Q
F
A
A
E
R
NVDLSTID
A
I
A
S
HGQTIWLLSMPEEGQVK
S
A
L
T
M
A
E
G
A
I
L
A
S
R
T
G
I
T
S
I
T
D
F
R
I
S
D
Q
A
A
GRQGAPLI
A
F
F
D
A
L
L
LHHPT
K
L
R
A
C
Q
N
I
G
G
I
A
N
V
C
F
I
P
P
DVDGRRTD
E
-
Y
Y
D
F
D
T
G
P
G
N
V
F
I
D
A
-
V
V
R
H
----
F
T
N
G
E
Q
E
Y
D
K
D
G
A
--
M
G
K
R
G
K
--
V
D
Q
E
L
V
D
--
D
---
F
L
--
K
M
P
Y
F
Q
L
D
P
P
K
T
T
------
G
R
E
V
F
R
D
T
L
A
H
D
L
I
R
R
A
E
A
K
GLS
P
D
D
I
V
A
T
T
T
R
I
T
A
Q
A
I
V
D
H
Y
R
R
YAPSQEID
E
I
F
M
C
G
GGAYN
P
N
I
V
E
F
I
Q
Q
S
Y
P
N
T
K
I
M
M
LDEAGVPAGA
K
E
A
I
T
F
A
W
Q
G
M
E
A
L
V
GRSI
P
V
P
T
RVETRQHYV
L
G
K
V
S
P
G
LN
Y
R
S
V
M
K
K
G
M
A
FGGDAQQLPWVS
E
M
I
V
K
K
KG
K
V
I
T
NNWAGSHHHH
28
Fugue
59.15
13%
-53
- C2 -
2KXE
-
DP2S_PYRHO
A:
[1-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
--------
E
-
F
V
K
G
L
M
K
N
G
Y
L
I
T
P
S
-
A
Y
Y
L
----
L
---
V
G
H
F
N
E
G
K
F
--
S
L
I
E
L
I
--
K
-
F
A
K
S
R
--
E
---
T
F
--
I
I
D
D
E
I
A
N
E
F
L
K
S
I
GAEVE
L
P
Q
E
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
58.20
12%
-29
* C2 *
4RS8
-
?
A:
[1-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YI
F
L
T
P
R
A
--------
Y
-
I
I
V
H
L
L
K
V
G
K
A
K
A
S
E
-
I
S
E
N
T
QIP
Y
---
Q
T
V
I
Q
N
I
R
W
--
L
L
A
E
G
Y
--
V
-
V
K
E
Q
K
--
G
E
E
I
Y
Y
--
K
L
T
D
K
G
K
Q
M
A
T
A
E
------
L
E
K
I
R
K
L
V
E
V
V----------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.11
14%
-103
- C3 -
3WH1
2
?
A:
[185-205]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
T
Y
----
Y
---
T
Q
F
C
Q
T
L
G
V
-------
D
--
P
-
G
T
D
L
R
--
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
47.13
19%
-42
- C3 -
2ZA4
-
BARS_BACAM
B:
[2-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
A
V
I
N
-
G
E
Q
I
R
S
--
I
S
D
L
----
H
---
Q
T
L
K
K
E
L
A
L
--
P
E
Y
-----
Y
-
G
E
N
L
D
--
A
---
L
W
--
A
A
L
T
G
W
V
E
Y
P
L
V
L
------
E
W
R
Q
F
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
47.01
8%
-24
- C2 -
4DHX
-
GANP_HUMAN
A:
[1162-1233]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
L
S
E
L
--------
S
-
Q
G
L
A
V
E
L
M
E
R
V
M
M
E
F
-
V
R
E
T
----
C
---
S
Q
E
L
K
N
A
V
E
--
T
D
Q
R
V
R
--
V
-
A
R
C
C
E
--
D
---
V
C
A
H
L
V
D
L
F
L
V
E
E
I
F
Q
T
------
A
K
E
T
L
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
46.54
17%
-68
- C3 -
1HTT
-
SYH_ECOLI
A:
[4-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
A
I
R
--------
G
-
M
N
D
Y
L
P
G
-
E
T
A
I
W
Q
R
-
I
E
G
T
----
L
---
K
N
V
L
G
S
Y
G
Y
--
S
E
I
R
L
P
--
I
-
V
E
Q
T
P
--
L
---
F
K
--
R
A
I
G
E
V
T
D
V
V
E
K
E
------
M
Y
T
F
E
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
46.13
13%
-56
- C3 -
1WH9
-
RS3_HUMAN
A:
[2-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
G
S
S
G
F
K
A
E
L
N
E
F
----
L
---
T
R
E
L
A
E
D
G
Y
--
S
G
V
--
E
--
V
-
R
V
T
P
---
T
---
R
T
--
E
I
I
I
L
A
T
R
T
Q
N
V
L
------
G
E
K
G
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.78
15%
-75
- C3 -
3NET
-
SYH_NOSS1
A:
[13-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
S
--------
G
-
F
P
E
F
L
P
S
-
E
K
R
L
E
L
Y
-
L
L
D
T
----
I
---
R
R
V
Y
E
S
Y
G
F
--
T
P
I
E
T
P
--
A
-
V
E
R
L
E
--
V
---
L
Q
--
A
K
G
N
Q
N
I
I
Y
G
L
E
P
------
I
L
E
A
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
43.20
17%
-66
- C3 -
2Z02
1
PUR7_METJA
A:
[168-200]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
K
K
L
F
D
E
K
G
I
IL
V
D
F
--
K
--
I
-
E
I
G
K
D
RE
G
---
N
L
--
L
V
A
D
E
I
S
P
D
T
M
R
L
------
W
D
K
E
T
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
42.53
15%
-81
- C3 -
1QE0
-
SYH_STAAU
A:
[2-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
I
P
R
--------
G
-
T
Q
D
I
L
P
E
-
D
S
K
K
W
R
Y
-
I
E
N
Q
----
L
---
D
E
L
M
T
F
Y
N
Y
--
K
E
I
R
T
P
--
I
-
F
E
S
T
D
--
L
---
F
A
--
R
E
M
Y
T
F
K
D
K
G
D
R
S
------
I
T
L
R
P
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
40.30
35%
-55
- C3 -
2A2U
-
MUP_RAT
A:
[124-146]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
L
S
S
D
-
I
K
E
K
----
F
---
A
K
L
C
E
A
H
G
I
--
T
R
D
N
I
I
--
D
-
L
T
K
T
D
--
R
---
C
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
37.35
24%
-19
* C3 *
1M45
-
B:
[1-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
I
S
Q
A
I
K
--
Y
-
L
Q
N
N
I
--
K
---
G
F
--
I
I
R
Q
R
V
N
D
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
37.25
11%
-46
- C3 -
1H4V
1
SYH_THET2
B:
[3-38]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
A
V
R
--------
G
-
T
K
D
L
F
G
K
-
E
L
R
M
H
Q
R
-
I
V
A
T
----
A
---
R
K
V
L
E
A
A
G
A
--
L
E
L
V
T
P
--
I
-
F
E
E
T
Q
--
V
---
F
E
--
K
G
V
G
A
K
E
M
F
T
F
Q
D
------
R
G
G
R
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
35.74
13%
-72
- C3 -
2JRH
-
M3K3_HUMAN
A:
[25-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
D
V
----
E
---
H
K
V
T
T
V
F
G
Q
P-
L
D
L
H
Y
M
----
N
-
N
-
E
--
L
---
S
I
--
L
L
K
N
Q
D
D
L
D
K
A
I
D
------
I
L
D
R
S
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
35.10
24%
-31
- C3 -
1DZK
-
OBP_PIG
A:
[124-144]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
D
Q
-
D
L
E
K
----
F
---
K
E
V
T
R
E
N
G
I
--
P
E
E
N
I
V
--
N
-
I
I
E
R
D
--
D
---
C
P
--
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
34.62
35%
6
- C3 -
2LUV
-
A:
[1-19]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
G
F
--
F
K
R
Q
Y
K
E
M
M
-
E
E
A
N
G
--
Q
---
I
A
--
P
E
N
G
T
Q
T
P
S
P
P
S
E
------
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.35
20%
-28
- C3 -
2KP7
-
MUS81_MOUSE
A:
[60-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
--------
E
-
A
K
I
L
Q
H
F
-
G
D
R
L
C
R
M
-
L
D
E
K
----
L
---
K
Q
H
L
A
S
G
G
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
31.32
25%
8
- C3 -
3FBU
1
?
A:
[132-144]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
V
M
E
K
I
G
M
R-
R
E
G
Y
F
K
--
K
-
C
I
P
H
G
--
N
---
E
W
--
W
D
E
Y
Y
Y
A
I
L
E
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------