@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0161: (2015-11-28 )
MNKFYNERSNSKNPSILLKEIVVKELANARVKIFLEKVREINLLPNNVPSSSMSHTSIFVLSPSNIRVVGHG
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....----...20..----......30------------....---.....40.....-...50---------.......---.60........70.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
K
F
YNERSNSK
N
P
S
I
----
L
L
K
E
I
V
V
----
K
E
L
A
N
A
R
-------------
V
K
I
F
---
L
E
K
V
R
E
INLLPN-NVPSS---------SMS
H
T
S
I
---
F
V
LSPS
N
I
R
V
VGHG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.08
30%
-58
- C4 -
4O89
1
RTCA_PYRHO
A:
[31-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
V
N
I
R
A
N
R
P
N
P
G
L
R
P
Q
H
L
H
A
I
L
A
L
----
K
H
L
A
N
A
E
-------------
V
K
G
A
---
H
V
G
S
R
E
L
V
F
I
P
K
-
K
L
E
A
K
---------
E
I
S
I
D
I
G
---
T
A
G
S
I
T
L
V
L
Q
A
L
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
67.81
18%
-60
* C4 *
1UFZ
-
HBS1L_MOUSE
A:
[1-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSS
G
S
S
G
E
Y
G
Y
E
D
L
R
E
S
S
N
----
S
L
L
N
H
Q
L
----
S
E
I
D
Q
A
R
-------------
L
Y
S
C
---
L
D
H
M
R
E
V
--
L
G
D
-
A
V
P
D
D
---------
I
L
T
E
A
I
L
K
HK
F
D
V
Q
K
A
L
S
V
V
L
E
Q
D
G
S
G
P
SSG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
63.71
20%
-21
- C4 -
3AT6
1
?
B:
[40-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
F
F
S
S
F
G
N
L
S
S
P
S
A
----
I
L
H
N
A
K
V
----
H
A
H
G
K
K
V
-------------
L
T
S
F
---
G
E
A
V
K
N
L
D
Q
I
K
Q
-
T
F
A
Q
L
---------
S
E
L
H
S
D
K
---
L
H
V
D
P
E
N
F
K
L
L
G
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
61.83
11%
-40
- C4 -
2A6S
2
YOEB_ECOLI
A:
[1-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
L
I
W
S
E
E
S
W
D
D
Y
L
Y
W
----
Q
E
T
D
K
R
I
----
V
K
K
I
N
E
L
-------------
I
K
D
T
---
R
R
T
P
F
E
G
K
G
K
P
E
-
P
L
K
H
N
LSG
F
W
S
R
R
I
T
E
E
H
R
L
V
---
Y
A
V
T
D
D
S
L
L
I
A
A
C
R
YH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
60.83
18%
-69
- C2 -
4Q05
2
?
A:
[34-360]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EN
S
W
Q
I
G
P
R
T
L
P
APSGA
S
D
V
L
Y
N
I
I
S
K
T
P
T
P
V
P
----
T
I
N
L
N
L
V
PRT
E
S
E
W
R
A
A
I
-------------
T
Q
L
D
EG
K
V
D
M
A
R
E
I
S
K
Q
L
S
V
S
V
E
H
G
---------
V
I
E
G
V
S
V
---
Y
Y
V
T
P
V
E
V
A
P
D
L
E
D
K
L
F
V
H
T
H
G
G
AFVLNGGEAGT
I
E
A
I
V
I
A
T
L
A
K
V
R
V
L
S
I
DYRMPPSHPAP
A
A
R
D
D
V
F
T
V
Y
Q
H
L
L
K
Q
GSAQK
I
A
L
G
G
S
S
G
G
A
N
L
T
M
G
L
V
Q
H
L
I
E
Q
EVDLPG
A
L
F
L
G
TPGADMSKTG
D
S
Y
Y
I
N
DGIDRNLVTYDG
F
L
E
A
A
V
R
L
Y
A
N
GRDLKDPLVSPLYGDLHGF
P
P
T
F
L
I
T
G
TRDLL
L
S
A
T
V
R
T
H
I
K
L
R
Q
S
GVV
A
D
L
F
V
Y
E
GIAHGDYAVDLTA
P
E
T
Q
H
A
F
A
E
L
N
A
F
L
L
Q
HLR
3
PsiBlast_PDB
60.17
20%
-25
- C4 -
3AT5
1
?
B:
[40-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
F
F
S
S
F
G
N
L
S
S
P
S
A
----
I
L
H
N
A
K
V
----
H
A
H
G
K
K
V
-------------
L
T
S
F
---
G
E
A
V
K
N
L
D
Q
I
K
Q
-
T
F
A
Q
L
---------
S
E
L
H
S
D
K
---
L
H
V
D
P
E
N
F
K
L
L
G
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
60.15
21%
-115
- C3 -
2KZ0
-
?
A:
[11-44]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
L
L
I
R
----
N
A
F
P
E
A
E
-------------
I
T
V
T
---
S
L
--------------
V
G
---------
D
N
N
H
Y
S
I
---
K
V
I
S
S
Q
F
Q
G
K
S
K
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
56.96
16%
-31
- C4 -
2NRG
-
PUFX_RHOS4
A:
[1-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
D
K
T
I
F
N
D
H
L
N
T
N
P
K
T
----
N
L
R
L
W
V
A
----
F
Q
M
M
K
G
A
GWAG
G
V
F
F
G
T
L
L
L
I
G
F
F
---
R
V
V
G
R
M
L
P
I
Q
E
N
-
Q
A
P
A
P
---------
N
I
T
G
A
L
--------
E
T
G
I
E
L
I
K
H
L
V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
55.68
12%
-46
- C4 -
3LD1
-
R1A_IBVM
A:
[5-363]
L
R
D
V
I
L
V
S
KDIP
E
Q
L
C
D
A
L
F
F
Y
TSHNPKD
Y
A
D
A
F
A
V
R
Q
K
F
D
R
N
L
Q
T
G
K
Q
F
K
F
ETVC
G
L
F
L
L
K
G
V
D
KITPGVP
A
K
V
L
K
ATSK
L
A
D
L
E
D
I
FGVS
P
F
A
R
K
Y
R
E
L
L
K
T
A
CQWSLT
V
E
T
L
D
A
R
A
L
T
LDEIFD
P
T
E
I
L
W
L
Q
V
AAK
I
Q
V
S
A
M
A
M
R
R
L
V
G
E
V
T
A
K
V
M
D
A
L
GSNMSALFQIFKQQI
V
R
I
F
Q
A
A
L
AIFENVSE
L
P
Q
R
I
A
A
L
K
M
A
F
A
K
C
A
K
S
I
T
V
V
V
----
M
E
R
T
L
V
V
----
R
E
F
A
G
T
C
-------------
L
A
S
I
---
N
G
A
V
A
K
F
F
E
E
L
P
-
N
G
F
M
G
---------
A
K
I
F
T
T
F
---
A
F
F
R
E
A
A
V
K
I
V
D
N
I
PNAPRG
T
K
G
F
E
V
V
G
N
A
K
G
T
QVVVRGMRND
L
T
L
L
DQKAEIPVES
E
G
W
S
A
I
L
GGHL
C
Y
V
F
K
S
GD
R
F
Y
A
A
P
L
S
GNFALHD
V
H
C
C
E
R
V
VCL-----------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.28
52%
-11
* C5 *
1XR5
-
?
A:
[8-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
R
E
F
N
I
N
P
V
-
N
T
P
T
K
---------
S
K
L
H
P
S
V
---
F
Y
D
V
F
P
G
D
K
E
P
A
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
47.45
17%
-27
- C4 -
1VDF
1
COMP_RAT
A:
[1-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
L
A
P
Q
M
----
L
R
E
L
Q
E
T
----
N
A
A
L
Q
D
V
-------------
R
E
L
L
---
R
Q
Q
V
K
E
I
T
F
L
K
N
-
T
V
M
E
C
---------
D
A
C
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.76
40%
-79
- C6 -
3ZIH
-
SEPF_BACSU
A:
[67-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
I
---
F
L
C
T
P
D
N
V
D
V
S
G
T
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.23
50%
-103
- C1 -
1V37
1
?
A:
[115-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
-------------
V
F
R
F
---
L
E
G
L
K
A
P
A
V
L
F
T
-
H
G
G
V
V
---------
R
A
V
L
R
A
L
---
G
E
D
G
L
V
P
P
G
S
A
V
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
37.24
12%
-36
- C4 -
1EHK
2
COXA_THET8
C:
[1-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
K
P
K
G
A
L
A
V
I
----
L
V
L
T
L
T
I
----
L
V
F
W
L
G
V
-------------
Y
A
V
F
---
F
A
R
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
36.64
12%
-8
- C4 -
1PQZ
-
?
A:
[5-242]
------------------------------------------------------------------------------------------------------GSES
G
L
R
Y
A
Y
T
L
V
V
DGTANTA
R
C
F
G
T
G
H
V
DGEAF
V
G
Y
S
NN
K
T
H
G
I
G
RWVN
A
S
H
V
E
E
E
N
K
E
F
V
R
Q
C
K
E
L
Q
A
E
L
D
K
M
Q
N
N
SAVIGVK
T
V
Q
L
D
VGCTS
K
I
E
K
H
Y
A
Y
D
G
N
E
T
E
D
D
T
A
T
----
S
A
S
E
----------
R
A
R
D
-------------
C
Q
K
K
---
L
T
E
Y
R
K
L
V
L
A
S
A
-
V
S
P
Q
L
---------
E
V
E
R
R
S
S
---
G
R
E
G
G
M
R
L
R
C
F
A
R
D
YYPA
D
L
E
I
R
W
W
K
D
DGGG
G
A
L
P
Q
T
S
K
Q
H
H
D
P
LPSGQG
L
Y
Q
K
H
I
D
V
Y
V
D
GGLEHV
Y
S
C
R
V
K
G
IATGL
E
L
Q
I
V
R
WKG------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
35.38
20%
-75
* C6 *
3ZIE
-
?
A:
[64-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
Y
---
V
I
M
T
P
T
G
I
K
V
D
R
N
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.14
38%
18
- C4 -
2CLY
-
ATP5J_BOVIN
C:
[10-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
F
---
V
D
K
I
R
E
Y
R
T
K
R
Q
-
T
S
G
G
P
---------
V
D
A
G
P
E
Y
---
Q
Q
D
L
D
R
E
L
F
K
L
K
Q
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
32.64
38%
-14
- C4 -
1HUL
-
IL5_HUMAN
A:
[90-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
R
-------------
V
N
Q
F
---
L
D
Y
L
Q
E
F
L
G
V
M
N
-
T
E
W
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.78
23%
7
- C6 -
3ZIG
-
?
A:
[73-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
---
V
I
L
T
P
P
E
I
K
I
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
6.74
14%
36
- C5 -
3P04
-
?
A:
[128-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
T
---
F
A
V
V
P
E
L
S
N
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------