@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0199: (2015-11-29 )
MAKVIASHSNGQEPEGEELNYRKTHEALERWKEKWPSNYKRINKVNASSSTEQGKTGKMGVQTDEKTVNYLMRKTNISEQNSQIQTRFLLIDQENQEVRLALLHSYQPPK
Atome Classification :
(20 SA)
----------------------------------.....--....10...-.....20...---...--..30-..--......40.....--....50........60........-70........80......----------..90.......-----.100--.........110-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------M
A
K
V
I
--ASHSNGQEP-EGEEL
N
Y
R
K
T
---
H
E
A
--
L
E
R
W
-
K
E
--KWP
S
N
Y
K
-
R
I
NKV--NASSSTEQGKTGKMGVQT
D
E
K
T
V
N
-
Y
L
M
R
KTNISEQNS
Q
I
Q
T
R
----------
F
L
L
I
DQENQE
V
-----
R
L
----
A
L
LHSYQPPK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.74
23%
33
- C8 -
3C5Z
-
?
A:
[22-116]
-------------------------------------------------------
C
N
Y
S
A
S
---
G
Y
P
--
A
L
F
W
-
Y
V
--
Q
Y
P
G
E
G
P
-
Q
F
-
L
F
--
R
A
S
R
D
K
E
K
G
S
S
R
G
F
E
A
T
Y
D
K
G
T
T
S
-
F
H
L
R
K
A
S
V
Q
E
S
D
S
A
V
Y
Y
C
----------
A
L
V
I
S
N
T
N
K
V
V
F
G
T
G
T
R
L
----
Q
V
L
P
N
I
Q
N
P
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
59.90
25%
-16
- C3 -
4QLA
1
HYEP_BOMMO
A:
[19-442]
LDLEEWWGPPELKQKQDT
S
I
K
P
F
E
I
T
FS
E
T
M
V
K
E
L
K
E
R
I
--
K
K
R
R
P
F
A
P
P
L
E
G
V
G
F
K
Y
G
F
N
---
S
K
Q
--
L
D
S
W
-
L
K
--
Y
W
A
E
E
Y
P
-----------------------
F
A
E
R
Q
K
F
L
N
Q
Y
P
H
F
K
T
N
I
Q
G
L
N
I
H
F
M
R
I
----------
T
P
K
V
P
K
G
V
E
I
V
-----
P
L
----
L
L
L
H
G
W
-
P
G
S
VREFYEA
I
P
H
L
T
AVSKDRN
F
A
L
E
I
I
A
P
S
L
PGYGF
S
D
A
A
VRPGLA
A
A
E
V
A
V
I
F
K
N
L
M
A
R
L
GYK
Q
Y
Y
V
Q
G
G
D
W
G
A
L
I
G
S
A
M
A
T
F
FPKEII
G
F
H
S
N
M
A
L
T
LS
P
A
A
T
F
L
E
F
V
G
A
L
FPSLIVEPELANRLYP
L
S
E
K
Y
S
T
L
L
E
E
L
G
Y
M
H
I
Q
A
TK
P
D
T
V
G
I
G
L
T
D
S
P
A
G
L
L
A
Y
I
L
E
K
F
S
TWTNPDLRSKEDGGLSYRWT
K
D
Q
L
I
D
N
L
M
L
Y
W
S
T
KS
I
V
T
S
M
R
L
Y
A
E
S
F
S
S
R
H
F
D
LKLDEIQVQ
V
P
T
W
V
L
Q
A
KHEL
A
Y
Q
P
P
C
I
L
K
M
K
Y
PKLV
N
A
S
V
I
EDGGHFLAFEL
P
E
I
F
A
K
D
V
L
K
A
I
G
E
F
R
K
L
K
N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
59.59
27%
10
- C7 -
1OTJ
1
TAUD_ECOLI
A:
[161-226]
------------------------------------------------------
E
Y
K
Y
R
K
T
---
E
E
E
--
H
Q
R
W
-
R
E
--
A
V
A
K
N
P
P
-
L
L
H
P
V
--
V
R
T
H
P
V
----
S
G
K
Q
A
L
F
V
N
E
---
G
-
F
T
T
R
I
V
D
V
S
E
K
E
S
E
A
L
L
S
----------
F
L
F
A
H
I
T
K
P
E
F
-----
Q
V
----
R
W
R
W
Q
P
N
D
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
59.49
27%
9
- C7 -
1GQW
1
TAUD_ECOLI
A:
[161-226]
------------------------------------------------------
E
Y
K
Y
R
K
T
---
E
E
E
--
H
Q
R
W
-
R
E
--
A
V
A
K
N
P
P
-
L
L
H
P
V
--
V
R
T
H
P
V
----
S
G
K
Q
A
L
F
V
N
E
---
G
-
F
T
T
R
I
V
D
V
S
E
K
E
S
E
A
L
L
S
----------
F
L
F
A
H
I
T
K
P
E
F
-----
Q
V
----
R
W
R
W
Q
P
N
D
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.68
27%
8
- C7 -
1OS7
1
TAUD_ECOLI
A:
[161-226]
------------------------------------------------------
E
Y
K
Y
R
K
T
---
E
E
E
--
H
Q
R
W
-
R
E
--
A
V
A
K
N
P
P
-
L
L
H
P
V
--
V
R
T
H
P
V
----
S
G
K
Q
A
L
F
V
N
E
---
G
-
F
T
T
R
I
V
D
V
S
E
K
E
S
E
A
L
L
S
----------
F
L
F
A
H
I
T
K
P
E
F
-----
Q
V
----
R
W
R
W
Q
P
N
D
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.34
27%
12
- C7 -
1GY9
1
TAUD_ECOLI
A:
[161-226]
------------------------------------------------------
E
Y
K
Y
R
K
T
---
E
E
E
--
H
Q
R
W
-
R
E
--
A
V
A
K
N
P
P
-
L
L
H
P
V
--
V
R
T
H
P
V
----
S
G
K
Q
A
L
F
V
N
E
---
G
-
F
T
T
R
I
V
D
V
S
E
K
E
S
E
A
L
L
S
----------
F
L
F
A
H
I
T
K
P
E
F
-----
Q
V
----
R
W
R
W
Q
P
N
D
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
58.20
19%
42
* C3 *
2E12
-
?
A:
[1-93]
----------------------------------
M
P
K
-
Y
--
A
P
H
V
Y
T
E
----------
Q
A
Q
---
I
A
T
--
L
E
H
W
-
V
K
--
L
L
D
G
Q
-----
E
R
V
--
R
I
E
L
D
D
G
S
M
I
A
G
T
V
A
V
R
P
T
I
Q
T
Y
R
----
D
E
Q
E
R
E
G
S
N
G
Q
L
R
I
D
----------
H
L
D
A
S
Q
E
P
Q
W
I
-----
W
M
----
D
R
I
V
A
V
H
P
M
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
57.33
15%
4
* C6 *
2J73
1
PULA_THEMA
A:
[1-103]
------------------------------FT
E
T
T
I
V
V
H
--
Y
H
R
Y
D
G
K
Y
D
--------------
G
W
N
--
L
W
I
W
-
P
V
--
E
--
P
V
S
Q
-
E
G
K
A
Y
--
Q
F
T
G
E
D
D
F
G
K
V
A
V
V
K
L
P
M
D
L
T
K
V
G
-
I
I
V
R
L
N
E
W
Q
A
K
D
V
-
A
K
D
R
----------
F
I
E
I
K
D
G
K
A
E
V
-----
W
I
L
QGV
E
E
I
F
Y
E
K
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
56.70
22%
56
- C6 -
4AEE
-
?
A:
[1-696]
----------------------------------
M
Y
K
I
I
-------
G
R
E
I
-
Y
G
K
G
----
R
K
---
G
R
Y
--
I
V
K
F
-
T
R
--
H
W
P
Q
Y
A
K
-
N
I
Y
L
I
--
G
E
F
T
S
L
Y
P
G
F
V
-
K
L
-
R
K
I
E
E
Q
G
I
V
-
Y
L
K
L
W
P
G
E
Y
G
Y
G
F
Q
I
D
N
D
----------
F
E
N
V
L
D
P
D
N
E
E
-----
K
K
----
C
V
H
T
S
F
F
P
E
Y
K
K
C
L
S
K
L
V
I
K
E
P
DNPLDK
I
I
H
I
EESGF
I
H
K
F
NG
E
I
I
I
R
L
I
A
P
TEINE
P
L
I
D
L
GN
E
I
R
E
PL
T
K
H
V
V
GD
N
I
V
Y
Q
Y
I
I
P
S
R
S
I
L
R
Y
R
F
I
F
N
Y
ND
K
K
L
F
Y
G
DEGVSENS
S
Y
I
V
V
N
SKY
I
P
G
V
DKPRWYM
G
T
V
Y
Y
Q
I
FIDSFDNGDPNNDPP
N
R
I
K
KTVPREYGYYGGD
L
A
G
I
M
K
H
I
D
H
L
E
D
L
GVE
T
I
Y
L
T
PIFSSTSYHRYDTIDYKSIDKYLGT
M
E
D
F
E
K
L
V
Q
V
L
H
S
R
K
I
K
I
V
L
D
I
TMHHTNPCN
E
L
F
V
K
A
L
R
E
GENSPYWEMFSFLSPPP
K
E
I
V
E
L
M
L
K
Y
I
DGEECRSRELYKL
D
Y
F
R
N
NKPFYEAFFNIWL
M
A
K
F
NHDN
P
R
T
V
D
Y
F
I
D
I
T
K
F
W
I
D
K
GID
G
F
R
I
D
VAMGIH
Y
S
W
M
K
Q
Y
Y
E
Y
I
K
N
T
YPD
F
L
V
L
G
ELAENPRIYMDYFDSAMN
Y
Y
L
R
K
A
I
L
E
L
L
IYKRID
L
N
E
F
I
S
R
I
N
N
V
Y
A
Y
I
P
H
Y
K
A
L
S
LYNMLGSHDVPR
I
K
S
M
V
QN
N
K
L
L
K
L
M
Y
V
L
I
F
A
LP
G
S
P
V
I
Y
Y
GDEIG
L
E
G
G
R
DPDNRRPMIWDRGNWD
L
E
L
Y
E
H
I
K
K
L
I
R
I
Y
K
S
C
R
SMR
H
G
Y
F
L
V
E
NLGSN
L
L
F
I
K
R
W
I
NN
E
E
I
I
F
L
L
NVSS
K
D
I
S
V
D
LKYSFDIYNEKNVLLRGY
G
F
L
I
L
G
SKPCNI
21
Fugue
52.39
14%
47
* C5 *
2KO6
-
?
A:
[1-89]
-------------------------------------------------------
M
K
C
K
R
L
---
N
E
V
--
I
E
L
L
-
Q
P
--
A
W
Q
K
E
P
D
F
N
L
L
Q
F
--
L
Q
K
L
A
K
E
S
G
F
D
G
E
L
A
D
L
T
D
D
I
L
I
Y
-
H
L
K
M
R
D
S
A
K
D
A
V
I
P
G
L
Q
K
---------------
D
Y
E
E
D
F
-----
K
T
----
A
L
L
R
A
R
G
V
I
K
E--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
51.73
14%
5
- C5 -
1L0V
5
FRDB_ECOLI
B:
[1-243]
-------------------------A
E
M
K
N
L
K
I
E
V
V
R
Y
N
--
P
E
V
D
T
A
P
H
S
-
A
F
Y
E
V
P
Y
D
A
T
TS
L
L
D
A
--
L
G
Y
I
-
K
D
--
N
L
A
P
D
-------
L
--
S
Y
R
W
S
C
R
M
A
I
C
G
S
C
G
M
M
V
N
N
--
V
P
-
K
L
A
C
K
T
F
L
R
D
Y
T
D
G
M
K
V
E
----------
A
L
A
N
F
P
I
E
R
D
L
-----
V
V
----
D
M
T
H
F
I
E
S
L
E
A
I
KPYIIGNSRTADQ
G
T
N
I
Q
T
P
A
Q
M
A
K
Y
HQFSGCINCG
L
C
Y
A
A
C
P
Q
F
G
L
N
PEFIG
P
A
A
I
T
L
A
H
R
Y
N
E
DSRDHGKKER
M
A
Q
L
N
SQNGVWSCTFVG
Y
C
S
E
V
CPKHVD
P
A
A
A
I
Q
Q
G
K
V
E
S
S
K
D
F
L
I
A
T
L
KPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
50.75
14%
37
- C6 -
2Y9W
1
?
C:
[9-150]
------------------------------LDLP
G
T
R
I
L
NG
A
N
W
A
N
N
S
A
T
-
S
G
T
L
I
I
F
D
Q
S
---
T
P
G
QD
A
D
R
W
-
L
I
--
H
N
Y
L
D
G
Y
-
K
I
F
N
M
GS
N
N
W
A
S
V
S
R
G
N
T
V
L
G
V
S
E
F
D
G
Q
T
C
K
-
W
---
S
I
E
Y
S
G
N
G
E
E
F
W
I
R
VPREGGGGAV
W
T
I
K
P
A
S
S
Q
G
P
-----
T
T
----
V
F
L
D
L
L
K
E
T
D
PNQRIKFAV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
50.65
13%
17
- C2 -
1US6
-
TRAM_RHIRD
A:
[12-101]
---------------------------------V
E
L
R
P
L
--
I
G
L
T
R
G
L
P
P
-
T
D
L
E
T
I
T
I
D
A
---
I
R
T
--
H
R
R
L
-
V
E
--
K
A
D
E
L
F
Q
-
A
L
P
E
T
--
Y
K
T
G
Q
A
C
G
G
----------
P
Q
H
I
R
-
Y
I
E
A
S
I
E
M
H
A
Q
M
S
A
L
N
T
L
----------
Y
S
I
L
G
F
I
P
K
V
V
-----
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
48.18
25%
17
- C7 -
4K6N
1
PABC_YEAST
A:
[81-142]
---------------------------------------------------------------------------------
S
S
Y
L
-
R
V
R
E
V
--
N
S
G
G
D
L
L
E
N
I
Q
H
P
D
A
W
K
H
D
C
K
T
I
V
-
C
----
Q
R
V
E
D
M
L
Q
V
I
Y
E
R
----------
F
F
L
L
D
E
Q
Y
Q
R
I
-----
R
I
----
A
L
S
Y
F
K
I
D
F
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
45.62
20%
45
- C3 -
1YA5
2
TELT_HUMAN
T:
[1-89]
----------------------------------
M
A
T
----------------
S
E
L
S
S
E
V
S
---
E
E
N
--
S
E
R
--
R
E
--
A
F
W
A
E
W
K
-
D
L
T
L
S
--
T
R
P
---
E
E
G
S
S
L
H
E
E
D
T
Q
R
H
E
T
Y
H
-
Q
Q
G
Q
S
Q
V
L
V
Q
R
S
P
W
L
M
M
R
----------
M
G
I
L
G
R
G
L
Q
E
Y
-----
Q
L
--------
P
Y
Q
R
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
39.48
23%
-77
- C8 -
1NYC
1
SSPC_STAAW
A:
[50-75]
---------------------------------------------------------------------------------------------------------------------------------
T
S
H
N
Q
Y
H
----------
I
L
F
I
D
T
A
H
Q
R
I
-----
K
F
----
S
S
F
D
N
E
E
I
I
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
38.45
10%
-60
* C8 *
2K52
-
A:
[49-74]
---------------------------------------------------------------------------------------------------------------------------------
G
D
E
I
I
V
Q
----------
A
I
D
V
R
P
E
K
R
E
I
-----
D
F
----
K
Y
I
P
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.66
11%
5
- C7 -
2DGY
-
EIF1A_HUMAN
A:
[79-115]
-------------------------------------------------
K
-
V
K
A
E
I
S
F
V
L
C
---
K
D
H
--
V
R
S
L
-
Q
K
E
G
F
W
P
E
A
F
S
-
E
V
A
E
K
--
H
N
S
G
P
S
S
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
34.08
25%
21
* C7 *
3RJA
4
?
A:
[423-455]
----------------------------------------------------
G
M
Y
I
N
Y
A
D
P
---
R
M
D
--
R
D
Y
A
T
K
V
--
Y
Y
G
E
N
L
A
-
R
L
Q
K
L
--
K
A
K
F
D
P
T
D
R
F
Y
Y
P
Q
A
V
R
P
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
33.31
27%
-45
* C4 *
1TZA
1
APAG_SHEON
A:
[28-57]
-----------------------------------------------------------------------------------------------------------------
Y
L
F
S
-
Y
T
I
T
I
I
N
L
G
E
Q
A
A
K
L
E
T
R
----------
H
W
I
I
T
D
A
N
G
K
T
-----
S
E
----
V
Q
G
A
G
V
V
G
E
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------