@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0457: (2015-12-01 )
MSTSLIVGLAFFVGFIFSYKLLKKVIKNALNDKRNKSKLTNEEIEKFRRDMLEYYKKSSEKYKKLDEEVNKMMNEAFDKADSIIKHNRKQLDRTLDDNARSYLEKVTDQVEKAIGDLQANTANIAADAVKKIMQEHKDDKRSSEVISSFSRNLNKKLH
Atome Classification :
(20 SA)
-----------------------------------------------------------------------.........10........20........30--.........40......---..50---------------------.--.....---------..60.....--------...70-----...--.....-80..---------.....-.90........100---------------------........110.......120.......130.......140......--.150......---------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------MST
S
L
I
V
G
L
A
F
F
V
G
F
I
F
S
Y
K
L
L
K
K
V
I
K
N
A
L
---NDKRNKSKL
T
N
E
E
I
E
K
F
---
R
R
D
M
---------------------
L
--
E
Y
Y
K
K
---------
S
S
E
K
Y
K
K
L
D
--------
E
E
V
N
K
-----
M
M
N
--
E
A
F
D
K
-
A
D
S
I
---------
I
K
H
N
R
-
K
Q
L
D
RTL
D
D
N
A
R
S
----------------------
Y
L
E
K
V
T
D
Q
V
E
K
A
I
G
D
LQAN
T
A
N
I
A
A
D
A
V
K
K
I
M
Q
EHKDD
K
R
S
S
E
V
I
S
S
--
F
S
R
N
L
NKKLH---------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
81.57
23%
-6
- C3 -
3EDV
1
SPTB2_HUMAN
A:
[101-201]
----------------------------------------------------------------------------------------------------
L
---
I
D
T
R
T
Q
I
L
A
A
S
Y
E
L
H
K
F
---
Y
H
D
A
---------------------
K
--
E
I
F
G
R
---------
I
Q
D
K
H
K
K
L
P
--------
E
E
L
G
R
-----
D
Q
N
T
V
E
T
L
Q
R
-
M
H
T
T
---------
F
E
H
D
I
-
Q
A
L
G
T
Q
V
----------------------------------
R
Q
L
Q
E
D
A
A
R
L
Q
A
A
Y
A
G
D
K
A
D
D
I
Q
---------
K
R
E
N
E
V
L
E
A
--
W
K
S
L
L
D
A
C
E
S
---------------------------------------------------------------------------------------------------------------------------
42
Fugue
78.21
15%
-16
- C4 -
4U0R
-
?
A:
[160-504]
----------------------------------------------------------------S
I
D
I
L
Q
E
K
E
G
H
L
D
F
V
I
I
P
H
Y
T
F
L
D
Y
Y
K
H
L
S
Y
N
S
I
Y
H
K
---
S
S
T
Y
G
K
Y
I
A
V
D
A
F
I
K
K
I
---
N
E
A
Y
---------------------
D
--
K
V
K
S
K
---------
C
N
D
I
K
N
D
L
I
--------
A
T
I
K
K
-----
L
E
H
--
P
Y
F
K
K
-
M
M
D
E
---------
Y
N
T
K
K
-
K
K
L
I
K
C
I
K
N
H
E
N
D
----------------------
F
N
K
I
C
M
D
M
K
N
Y
G
T
N
L
F
E
Q
L
S
C
Y
N
N
N
F
C
N
T
N
G
I
R
Y
H
Y
D
E
Y
I
H
K
L
I
L
S
V
--
K
S
K
N
L
N
K
D
L
S
D
M
T
N
I
L
Q
Q
S
E
L
L
L
T
N
L
N
K
K
M
GS
Y
I
Y
I
D
T
I
K
F
I
H
K
E
M
K
H
I
F
N
R
I
E
Y
H
T
K
I
I
N
D
K
T
K
I
I
Q
D
K
I
K
L
N
IW
R
T
F
Q
K
D
E
L
L
K
R
I
L
D
M
S
N
E
Y
S
L
F
I
T
S
D
H
L
R
Q
M
L
Y
N
T
F
Y
S
K
E
K
H
L
N
N
I
F
H
H
L
I
Y
V
LQMK
6
PsiBlast_PDB
73.86
26%
-29
- C3 -
4WW0
-
FTSH_AQUAE
A:
[403-455]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
D
L
L
R
E
I
D
--------
E
E
V
R
R
-----
I
I
T
--
E
Q
Y
E
K
-
A
K
A
I
---------
V
E
E
Y
K
-
E
P
L
K
A
V
V
----
K
K
----------------------
L
L
E
K
E
T
I
T
C
E
E
F
V
E
V
F
K
L
Y
G
I
E
L
K
D
K
C
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
72.20
41%
-25
- C3 -
3KDS
-
FTSH_THEMA
E:
[401-439]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
E
V
A
S
K
I
D
--------
E
E
V
K
K
-----
I
V
T
--
N
C
Y
E
R
-
A
K
E
I
---------
I
R
K
Y
R
-
K
Q
L
D
N
I
V
E
I
L
L
E
K
----------------------
E
T
I
E
G
D
E
L
R
R
I
L
S
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
70.67
9%
-43
- C5 -
3MK4
1
PEX3_HUMAN
A:
[1-329]
G
Q
E
R
E
A
A
E
Y
I
A
Q
A
R
R
Q
Y
H
F
E
S
N
Q
R
T
C
N
M
T
V
L
S
M
L
P
T
L
R
E
A
L
M
Q
Q
L
N
S
E
S
L
T
A
L
L
K
N
RPSN
K
L
E
I
W
E
D
L
K
I
I
S
F
T
R
S
T
V
A
V
Y
S
T
C
M
L
V
V
L
L
R
V
Q
L
N
I
I
G
G
Y
I
---
Y
L
D
N
A
T
T
I
L
A
P
P
D
V
Q
Q
Q
---
Y
L
S
S
---------------------
I
--
Q
H
L
L
-----------
G
D
G
L
T
E
L
I
--------
T
V
I
K
Q
-----
A
V
Q
--
K
V
L
G
S
-
V
S
L
-------------
K
H
-
S
L
S
L
L
D
L
E
Q
K
L
K
E
----------------------
I
R
N
L
V
E
Q
H
L
L
S
H
Y
M
M
P
D
E
E
T
L
S
P
R
D
I
T
T
I
K
L
L
N
E
T
R
D
M
L
E
S
P
D
F
S
T
V
--
L
N
T
C
L
N
R
G
F
S
R
L
L
D
N
M
AEFFRVSLP
L
A
K
I
I
P
I
V
N
G
Q
I
H
S
V
C
SETPSH
F
V
Q
D
L
L
T
M
E
Q
V
K
D
F
A
A
N
V
Y
E
A
F
S
TP-------------------------------------------------------------
7
PsiBlast_PDB
70.15
26%
-30
- C3 -
4Z8X
1
FTSH_AQUAE
A:
[403-455]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
D
L
L
R
E
I
D
--------
E
E
V
R
R
-----
I
I
T
--
E
Q
Y
E
K
-
A
K
A
I
---------
V
E
E
Y
K
-
E
P
L
K
A
V
V
----
K
K
----------------------
L
L
E
K
E
T
I
T
C
E
E
F
V
E
V
F
K
L
Y
G
I
E
L
K
D
K
C
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
66.75
22%
15
- C3 -
1L2P
-
ATPF_ECOLI
A:
[64-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
K
--
K
A
K
A
E
-
A
Q
V
I
---------
I
E
Q
A
N
-
K
R
R
S
Q
I
L
D
E
A
K
A
E
----------------------
A
E
Q
E
R
T
K
I
V
A
Q
A
Q
A
E
I
E
A
E
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
65.75
25%
5
- C3 -
2HEK
2
?
A:
[258-369]
--------------------------------------------------------------------------------
A
F
V
I
S
E
L
F
K
R
K
A
F
R
E
D
F
E
R
I
F
---
Q
R
K
H
F
K
T
L
L
S
T
E
N
Y
E
K
F
S
E
T
K
E
R
L
---------------------
L
--
E
K
F
P
Q
---------
E
K
V
R
F
D
E
V
E
--------
K
E
V
Y
G
GN
I
Y
V
L
S
S
--
E
G
L
K
K
-
A
H
E
L
S
P
LIAS
L
K
P
I
K
L
Y
R
-
I
Y
V
D
R
Q
L
W
E
K
A
R
S
----------------------
E
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
63.93
29%
-14
- C3 -
4M0M
1
?
A:
[678-734]
------------------------------------------------------------------------------------------
K
L
K
E
R
L
V
D
L
K
E
---
K
G
M
G
N
D
V
N
A
I
T
R
E
L
G
K
A
---
R
E
D
L
---------------------
I
--
E
H
Y
K
K
---------
T
----
G
E
L
D
--------
K
I
I
N
K
-----
S
M
E
--
E
L
L
V
A
-
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
61.16
21%
8
* C5 *
4FYP
1
VSP1_ARATH
A:
[34-261]
--------------------------------------------------------------G
L
S
I
N
Y
PN
C
R
S
W
H
L
G
V
E
T
S
N
I
I
N
F
D
T
V
P
A
N
C
K
A
Y
V
E
D
Y
L
ITS
K
Q
Y
Q
Y
D
S
K
T
V
N
K
E
A
Y
F
Y
---
A
K
G
L
ALKNDTV
N
V
W
I
F
D
L
DDTLLSS
I
--
P
Y
Y
A
K
Y
GYGT
E
N
T
A
P
G
A
Y
W
S
W
L
E
S
G
E
S
T
P
G
L
P
E
T
L
H
-----
L
Y
E
--
N
L
L
E
L
G
I
E
P
I
---------
I
I
S
D
R
W
K
K
L
S
E
V
T
V
E
N
L
K
A
V
GVTKWK
H
L
I
L
K
PNGSKLT
Q
V
V
Y
K
S
K
V
R
N
S
L
V
K
K
G
Y
N
I
V
G
N
I
G
D
Q
W
A
D
L
V
E
D
T
------
P
G
R
V
F
K
L
P
N
P
LY
Y
V
P
S
L
E
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.84
27%
8
- C3 -
4EIW
-
FTSH_THET8
A:
[420-470]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
E
T
A
K
R
I
D
--------
E
A
V
R
R
-----
L
I
E
--
E
Q
Y
Q
R
-
V
K
A
L
---------
L
L
E
K
R
-
E
V
L
E
R
V
----
A
E
T
----------------------
L
L
E
R
E
T
L
T
A
E
E
F
Q
R
V
V
E
G
L
P
L
E
A
P
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
60.32
12%
2
- C3 -
1L2P
-
ATPF_ECOLI
A:
[63-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
L
K
K
A
K
--------
A
E
A
Q
V
-----
I
I
E
--
Q
A
N
K
R
-
R
S
Q
I
---------
L
D
E
A
K
-
A
E
A
E
Q
E
R
T
K
I
V
A
Q
----------------------
A
Q
A
E
I
E
A
E
R
K
R
A
R
E
E
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
59.11
16%
-19
- C3 -
3V6I
3
VATE_THET8
A:
[10-52]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
E
--------
A
E
I
Q
A
-----
L
L
Q
--
E
A
E
A
K
-
A
E
A
V
---------
K
R
E
A
E
-
E
K
A
K
A
L
L
Q
A
R
E
R
A
----------------------
L
E
A
Q
Y
R
A
A
L
R
R
A
E
S
A
G
E
L
L
V
A
T
A
R
T
Q
A
R
G
E
V
L
E
E
V
R
R
R
V
R
E
A
L
E
A
L
P
--
Q
K
P
E
W
P
E
V
V
R
---------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
58.79
27%
2
- C3 -
2DHR
-
FTSH_THET8
A:
[411-461]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
E
T
A
K
R
I
D
--------
E
A
V
R
R
-----
L
I
E
--
E
Q
Y
Q
R
-
V
K
A
L
---------
L
L
E
K
R
-
E
V
L
E
R
V
----
A
E
T
----------------------
L
L
E
R
E
T
L
T
A
E
E
F
Q
R
V
V
E
G
L
P
L
E
A
P
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
57.01
11%
-12
- C3 -
3V6I
3
VATE_THET8
A:
[11-107]
-------------------------------------------------------------------------------------------------------------------------------
V
---------------------
E
--
A
E
I
------------
Q
A
L
L
Q
E
A
E
--------
A
K
A
E
A
-----
V
K
R
--
E
A
E
E
K
-
A
K
A
L
---------
L
Q
A
R
E
-
R
A
L
E
A
Q
Y
R
A
A
L
R
R
----------------------
A
E
S
A
G
E
L
L
V
A
T
A
R
T
Q
A
R
G
E
V
L
E
E
V
R
R
R
V
R
E
A
L
E
A
L
P
Q
K
P
E
W
P
E
V
V
R
K
--
L
A
L
E
A
L
E
A
L
P
---------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
54.46
37%
37
- C3 -
1RHJ
-
CASP3_HUMAN
A:
[46-85]
--------------------------------------------------------------------------------------------
L
R
E
T
F
R
N
L
K
---
Y
E
V
R
N
K
N
D
L
T
R
E
E
I
V
E
L
---
M
R
D
V
---------------------
S
K
E
D
H
S
K
R
---------
S
S
F
V
C
V
L
L
S
--------
H
G
E
E
G
-----
I
I
F
--
G
T
N
G
P
-
V
D
L
K
---------
K
I
T
N
F
-
F
R
G
D
R
C
R
S
L
T
G
K
P
----------------------
K
L
F
I
I
Q
A
C
R
G
T
E
L
D
C
G
I
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
53.98
37%
30
- C3 -
1RHM
-
CASP3_HUMAN
A:
[46-85]
--------------------------------------------------------------------------------------------
L
R
E
T
F
R
N
L
K
---
Y
E
V
R
N
K
N
D
L
T
R
E
E
I
V
E
L
---
M
R
D
V
---------------------
S
K
E
D
H
S
K
R
---------
S
S
F
V
C
V
L
L
S
--------
H
G
E
E
G
-----
I
I
F
--
G
T
N
G
P
-
V
D
L
K
---------
K
I
T
N
F
-
F
R
G
D
R
C
R
S
L
T
G
K
P
----------------------
K
L
F
I
I
Q
A
C
R
G
T
E
L
D
C
G
I
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
53.54
10%
0
* C3 *
3V6I
-
?
B:
[8-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
S
L
A
E
K
E
--------
K
Q
L
L
E
-----
R
L
E
--
A
A
K
K
E
-
A
E
E
R
---------
V
K
R
A
E
-
A
E
A
K
A
L
L
E
E
A
E
A
K
----------------------
A
K
A
L
E
A
Q
Y
R
E
R
E
R
A
E
T
E
A
L
L
A
R
Y
R
E
R
A
E
A
E
A
K
A
V
R
E
K
A
M
A
R
L
D
E
A
V
A
--
L
V
L
K
E
V
L
P
-----------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
53.09
37%
40
- C3 -
1PAU
-
?
A:
[46-85]
--------------------------------------------------------------------------------------------
L
R
E
T
F
R
N
L
K
---
Y
E
V
R
N
K
N
D
L
T
R
E
E
I
V
E
L
---
M
R
D
V
---------------------
S
K
E
D
H
S
K
R
---------
S
S
F
V
C
V
L
L
S
--------
H
G
E
E
G
-----
I
I
F
--
G
T
N
G
P
-
V
D
L
K
---------
K
I
T
N
F
-
F
R
G
D
R
C
R
S
L
T
G
K
P
----------------------
K
L
F
I
I
Q
A
C
R
G
T
E
L
D
C
G
I
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
52.99
11%
28
- C4 -
2CQQ
-
A:
[1-72]
---------------------------------------------------------------------------------------------------
G
S
---
S
G
S
S
G
A
P
E
W
T
E
E
D
L
S
Q
L
---
T
R
S
M
---------------------
V
--
K
F
P
G
G
---------
T
P
G
R
W
E
K
I
A
--------
H
E
L
G
R
-----
S
V
T
--
D
V
T
T
K
-
A
K
Q
L
---------
K
D
S
V
T
-
C
S
P
G
M
V
S
G
P
S
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------