@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0476: (2015-12-01 )
MNKLLKKFYGIIYCLYHALIDTIYNDGMEHAGYLSFLILLSIFPFLIVLMALASTFANFLDQYNIGWTFIIDNMPQDILASLMPRIREIISGPPQSLLTLAIVGAIWTASSTIEGLRTILNKAYKVPVSPPYVLRRILSILQFLIITFIITLTIVFSTLVPMLIDFSYHGLSYTRYLLIEFVLFIVVSWLYFMLPNIRQNVSDVFPGSYIAVMLWTVSASAFKQYLRASFDQLDLIYGSLGGVVVSLLFFYMVSLIFIYGAKFNFQLKCFNGSR
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-----..---.20...--.....30...----.....40...-----.....50........60..---.....--.70........80........90...--.....100...-...------.110-----.--......120.....---..-130.-------......140.......-150.....--------...160-........170.......180----.........190.......200.......210.......220.......----230-----------......-----...240-........250--.-.......260.------......270..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
L
L
K
K
F
Y
G
I
I
Y
C
L
Y
-----
H
A
---
L
I
D
T
I
Y
--NDGM
E
H
A
G
Y
L
----
S
F
L
I
L
L
S
I
F
P
-----
F
L
I
V
L
M
A
L
A
S
T
F
A
N
F
L
D
QY---NIG
W
T
--
F
I
IDNM
P
Q
D
I
L
A
S
L
M
P
R
I
R
E
I
ISGP
P
--
Q
S
L
L
T
L
A
I
V
G
A
-
I
WT------
A
S
S
T
-----
I
--
E
G
L
R
T
I
L
NKAYKVP---VS-
P
P
Y
V
-------
L
R
R
I
L
S
I
L
Q
F
L
I
I
T
F
I
-
I
-
T
L
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I
V
F
--------
S
T
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V
P
--
M
L
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D
FSYH
G
L
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T
R
Y
L
L
I
E
------
F
V
L
F
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V
S
W
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M
L
P
N
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A
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----
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-------------
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-----
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G
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L
L
F
F
Y
---
M
-
V
S
L
I
F
I
YGA
K
F
------
N
F
Q
L
K
CFNGSR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
100.00
18%
-185
- C4 -
3W3W
1
IMB3_YEAST
A:
[3-1077]
ALP
E
E
V
N
R
T
L
L
Q
I
V
Q
A
FASD
N
Q
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DRDEYNED
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DGSKLEEN
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T
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A
M
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F
N
RYP
A
D
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M
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K
V
H
K
W
F
17
Fugue
79.06
13%
-153
- C5 -
3ZPJ
-
?
A:
[1-356]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
T
L
E
E
I
N
L
L
V
E
R
GY
Y
E
E
A
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YEIED
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---
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P
Q
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R
A
------
A
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M
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D
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D
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A
----
F
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C
CESPRFT
D
V
N
V
Q
H
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A
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L
-----
L
T
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--
N
L
R
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A
L
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---
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A
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------
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KFEE
V
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IPD
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L
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I
GTIE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
73.57
13%
-151
- C5 -
2JO7
-
?
A:
[69-292]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
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A
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---
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A
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-
S
M
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Q
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--------
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A
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Q
M
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L
L
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Y
G
P
I
G
--
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
72.69
13%
-172
- C5 -
2IML
4
?
A:
[3-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
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L
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F
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A
------------------------------------------------------------
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L
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A
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--------------------------
K
S
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R
K
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L
L
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----
I
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Y
Y
R
E
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--
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E
K
R
A
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---
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M
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G
E
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
63.67
20%
-119
- C5 -
2LSE
-
?
A:
[1-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
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E
R
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A
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A
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V
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A
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-----
I
--
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M
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M
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-------
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L
L
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L
L
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A
------------------
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S
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V
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RG
S
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L
E
H
H
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H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
61.69
13%
-112
- C- -
2XM5
10
CLOQ_STRRC
A:
[8-318]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIDQEFD
C
E
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F
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--
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----
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GDQL
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---
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P
A
A
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MPED
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L
E
V
A
PSHD
V
-------------
E
E
C
N
V
I
-----
G
W
S
F
G
RS
G
D
Y
V
K
A
E
R
S
Y
T
GN
M
-
A
E
I
L
A
G
W
N
C
F
F
HGEEGR
D
H
D
L
R
A
L
H
Q
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.50
26%
-80
- C5 -
1EJE
3
P152_METTH
A:
[31-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
T
T
V
D
--
E
E
G
N
I
N
A
A
P
F
----
S
F
T
M
P
V
S
I
D
P
-----
P
V
V
-------
A
F
A
S
A
P
D
H
H
T
A
R
N
I
E
S
T
H
E
F
V
I
N
I
T
P
A
D
I
I
E
R
M
W
V
T
A
R
D
I
P
A
G
E
N
--
E
----
L
E
A
A
G
L
-
A
W
T
------
S
S
R
R
-----
V
--
K
P
P
R
I
V
E
A
P
G
H
L
E
C
---
E
L
-
L
R
M
F
-------
E
V
G
D
H
N
L
I
T
G
S
V
V
S
A
S
-
V
-
R
S
G
A
V
K
--------
E
G
L
L
D
--
V
E
S
V
K
P
V
L
H
V
G
G
N
K
F
V
V
G
D
------
H
V
R
H
V
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
53.03
12%
-85
- C6 -
3J9P
-
D:
[1278-1327]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
L
R
S
T
V
V
F
------
I
F
L
L
L
A
F
G
L
S
F
Y
I
L
L
N
L
Q
D
P
F
-
S
S
P
L
L
S
I
I
Q
T
F
S
M
M
L
G
D
I
N
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.16
13%
-118
- C5 -
3ONR
2
DODEC_MYCTU
A:
[2-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
V
Y
K
V
I
D
I
-
I
G
T
------
S
P
T
S
-----
W
--
E
Q
A
A
A
E
A
V
Q
R
A
R
D
S
VDD
I
R
-
V
A
R
V
-------
I
E
Q
D
M
A
V
D
S
A
G
K
I
T
Y
R
-
I
-
K
L
E
V
S
F
--------
K
M
R
P
S
--
Q
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
45.03
38%
103
- C6 -
3NDH
2
?
A:
[114-149]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
W
T
V
D
A
T
K
A
R
Q
F
L
E
T
W
----
H
-------------
P
R
F
D
L
I
L
V
H
I
N
W
S
S
L
G
--
G
V
Y
Y
I
P
D
Y
V
Q
---
Q
-
R
I
F
D
E
I
G
K
D
K
Y
------
I
K
L
P
K
Q
G
T
N
P
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
43.99
18%
-98
- C6 -
3RLF
1
MALF_ECOLI
F:
[40-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
F
A
I
------
T
T
L
I
L
S
S
A
G
L
Y
I
F
A
N
R
K
A
Y
A
W
R
Y
V
Y
P
G
M
A
G
-
M
G
L
F
V
L
F
P
L
V
C
T
I
A
I
A
------
F
-------------
T
N
Y
S
S
T
-----
N
Q
L
T
F
--
E
R
A
Q
E
V
L
L
D
R
---
S
-
W
Q
A
G
K
T
Y
N
F
G
L
------
Y
P
A
G
D
E
W
Q
L
A
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
42.75
30%
157
* C5 *
4PN8
-
?
A:
[2-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
I
E
Q
I
L
Q
K
I
E
K
I
L
---
Q
K
-
I
E
W
I
-------
L
Q
K
I
E
Q
I
L
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.67
13%
285
* C6 *
1HGV
-
CAPSD_BPH75
A:
[4-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
S
E
V
A
S
Q
V
T
N
Y
I
Q
A
I
A
A
A
G
V
--
G
V
L
A
L
A
I
G
L
S
A
-
A
W
K
------
Y
A
K
R
-----
F
--
L
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
35.21
28%
143
- C6 -
1W8X
-
VP16_BPPRD
P:
[7-24]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
Y
W
V
G
G
--
G
L
V
L
I
L
I
W
L
W
---
F
-
R
N
R
P
A
A
Q
V
A
S
N
------
W
E
G
P
P
Y
M
T
Y
N
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
28.92
32%
89
- C6 -
2K8J
-
?
X:
[5-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
A
A
Y
A
L
Y
G
V
W
P
-----
L
L
L
L
L
L
A
L
P
P
R
A
Y
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
23.73
27%
690
- C6 -
3GP2
-
B:
[6-17]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
R
R
K
L
K
G
A
I
L
T
T
M
L
A
T
A
N
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
22.61
30%
608
- C1 -
3KL4
-
B:
[17-25]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
I
I
L
V
L
L
I
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
21.30
20%
1019
- C3 -
1UVQ
-
OREX_HUMAN
C:
[8-17]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
S
T
K
V
S
W
A
A
V
G
G
G
G
S
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
18.32
17%
590
- C6 -
2FCG
-
F:
[23-34]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
K
D
--
F
L
R
N
L
V
P
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
13.46
9%
496
- C2 -
1RGX
-
RETN_MOUSE
A:
[15-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
K
Q
--
D
F
N
S
L
F
P
N
A
I
K
N
I
G
L
N
C
W
T
V
S
S
R
G
K
L
--
A
S
C
P
E
G
T
A
V
L
S
-
C
S
C
------
G
S
A
C
-----
G
--
S
W
D
I
R
E
E
K
V
C
H
C
Q
C
---
A
R
-
I
D
W
T
-------
A
A
R
C
C
K
L
Q
V
A
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------