@TOME V2.3
(Nov 2016)
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-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0637: (2015-12-03 )
MVENNDDNLFIKRFANRTSSSIGGSFSSKYSSQNTKARALEERGKISQLASKKTEPKEAFSESGSIKGKSRTVNERSFADATRRSRSDLIYLVRGKDRGRSAWHYVLVDKDKREMFLAKSRTGSMDVADYGEVLYSGWGEDPSQEIVDKINEEFGI
Atome Classification :
(20 SA)
------------------------------------------------.........10-------.----........20.--.......30...-.....40....--------...------.50.....-----------------...-60.......--.70-....-------------.----.----...80--------------.....-....90---....-------..--..100.---------.....-----.110--------..-.-..----..120...--..-..---.------------.130-----------.........-----------140-........150....-----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------MVENNDD
N
L
F
--------
I
----
K
R
F
ANRTSSSI--GGSFSSKYSSQN-
T
K
A
R
A
L
E
ERG
K
--------
I
S
Q
------
L
A
SKKT
E
P
-----------------
K
E
A
-FSESGSIKG--KS--RTVN-------------E----
R
----
S
F
A
D
---------------
A
TRRS-RS
D
L
I
Y
---
L
V
RG-------KD--RGR
S
A
W
---------
H
Y
V
L
V-----DKDK--------R
E
-
M
-
F
L
----AKS--RTG--SM-
D
V
---
A
------------
D
Y
-------------
G
E
V
L
Y
SGWG-----------ED--
P
S
Q
E
I
V
D
K
I
N
E
E
FGI-----------------------------
33
Fugue
68.73
19%
27
- C3 -
2VQ2
6
?
A:
[4-223]
----------------------------------------------AN
Q
V
S
N
I
K
T
Q
L
A
--------
M
----
E
Y
M
R
G
Q
D
Y
R
Q
A
--
T
A
S
I
E
D
A
L
K
S
D
P
-
K
N
E
L
A
W
L
V
R
A
E
--------
I
Y
Q
------
Y
L
K
V
N
D
K
A
-----------------
Q
E
S
-
F
R
Q
A
L
S
I
K
P
--
D
S
--
A
E
I
N
N
N
Y
G
W
F
L
C
G
R
LNR
P
----
A
----
E
S
M
A
---------------
Y
F
D
K
A
-
L
A
D
P
T
Y
PT
P
Y
I
A
N
-------
L
N
--
K
G
I
C
S
A
K
Q
GQ
F
G
L
A
E
A
Y
L
K
R
-----
S
L
A
A
Q
PQF
P
P
A
F
K
E
-
L
-
A
R
----
T
K
M
--
L
A
G
--
Q
L
-
G
D
---
A
------------
D
Y
Y
F
K
K
Y
Q
S
R
V
EVLQ
A
D
D
L
L
L
G
W
K
I
A
K
A
L
GN----
A
Q
--
A
A
Y
E
Y
E
A
Q
L
Q
A
N
F
P
Y
S
E
E
L
Q
T
V
L
T--------------------
29
Fugue
65.83
14%
8
* C3 *
3B85
5
?
A:
[4-208]
----------------------------------------------VI
R
P
K
T
L
G
Q
K
H
Y
--------
V
----
D
A
I
D
T
N
T
I
V
F
G
--
L
G
P
A
G
S
G
K
T
Y
L
A
M
A
K
A
V
Q
A
L
Q
S
K
Q
--------
V
S
R
------
I
I
L
T
R
P
-
A
-----------------
V
E
A
-
G
E
K
L
G
F
L
P
G
--
D
P
YL
R
P
L
H
-------------
D
----
A
L
R
D
M
V
E
P
E
---------------
V
I
P
K
L
M
E
A
G
I
V
E
---
V
A
P
L
-------
A
Y
M-
R
G
R
T
L
N
---------
D
A
F
V
I
L
D
EAQ
N
T
T
P
--------
A
Q
M
K
M
F
L
----
T
R
L
--
G
F
G
--
S
K
M
V
V
---
T
G
DG
L
R
L
V
R
H
I
L
R
G
V
-------------
D
D
V
H
F
S
E
L
T
-----------
S
S
DV
V
R
H
Q
L
V
G
H
I
V
D
A
Y
E
------------------------------
26
Fugue
60.53
18%
5
- C3 -
4PCA
4
?
A:
[6-226]
------------------------------------------H
H
H
M
R
N
V
S
L
S
K
Q
D
E
Y
L
--------
N
----
K
L
F
A
V
D
T
E
G
A
L
--
K
A
H
K
T
A
P
--
S
E
L
-
R
M
A
Q
L
G
T
V
E
G
Q
--------
M
L
Q
------
L
L
I
R
M
A
G
I
H
S
I
V
E
V
G
TCVG
F
S
A
I
C
M
A
H
A
-
L
P
S
K
G
H
I
Y
T
I
E
K
D
--
Y
E
N
V
-------------
V
----
T
----
A
N
Q
N
---------------
I
V
N
C
K
-
L
E
D
K
I
T
---
V
L
H
G
E
A
L
A
Q
L
N
T
L
--
K
E
M
A
P
F
---------
D
M
I
F
I
-----
D
A
N
K
--------
S
S
-
Y
-
L
A
Y
L
N
W
A
K
M
YI
R
K
G
--
G
L
-
I
V
---
A
------------
D
N
-------------
T
F
L
F
G
S
V
F
D
-----------
E
H
--
P
T
E
K
V
S
S
N
A
H
A
S
M
R
A
F
N
D
E
L
A
NKEKYLSTIIPTSE
G
M
M
V
S
I
K
LT
32
Fugue
60.10
16%
4
- C4 -
4ERN
-
ERCC3_HUMAN
A:
[502-730]
I
A
K
V
Q
C
A
E
V
W
C
P
M
S
P
E
F
Y
R
E
Y
V
A
IKTK
K
R
I
L
L
Y
T
M
N
P
N
K
F
R
A
C
Q
F
L
I
K
F
H
E
R
R
N
D
K
I
I
--------
V
F
A
DN
V
F
A
L
K
E
Y
A
I
R
L
--
N
K
P
Y
I
Y
G
P
T
S
Q
G
-
E
R
M
Q
I
L
Q
N
F
K
H
NPKIN
T
I
F
I
S
K
------
V
G
D
T
S
F
D
L
-----------------
P
E
A
N
V
L
I
Q
I
S
S
H
G
--
G
S
--
R
R
Q
E
-------------
A
----
Q
----
R
L
G
R
---------------
V
L
R
A
K
-
K
G
M
-----------------
V
A
--
E
E
Y
N
A
F
---------
F
Y
S
L
V
-----
S
Q
D
T
--------
Q
E
-
M
-
A
Y
----
S
T
K
--
R
Q
R
--
F
L
-
V
D
---
Q
------------
G
Y
-------------
S
F
K
V
I
T
K
L
A
-----------
G
M
--
E
E
E
D
L
A
F
S
T
K
E
E
Q
Q
Q
L
L
Q
K
V
L
A
ATDLDAEEEVVA----------
12
PsiBlast_PDB
58.40
31%
-47
- C5 -
1EU8
1
MALE_THELN
A:
[35-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
E
-------------
L
----
K
----
R
Q
A
T
---------------
D
T
E
Q
R
-
R
L
D
L
V
N
---
A
L
R
G
-------
K
S
--
S
------------------------
D
P
D
------------
V
-
F
L
---------------
M
-
D
V
---
A
------------
W
L
-------------
G
Q
F
I
A
S
G
W
L
-----------
E
---
P
L
D
D
Y
V
Q
K
D
N
Y
D
L
S
V
-----------------------------
24
Fugue
52.65
14%
14
- C2 -
3ZXU
-
CTF19_KLULA
B:
[69-269]
------------------------------------------------
S
V
Q
L
D
D
K
L
L
L
--------
K
----
L
L
R
R
N
D
N
A
V
S
D
--
S
S
N
P
L
P
R
V
L
P
S
L
-
N
I
E
Q
R
K
K
Y
L
D
I
--------
T
L
N
------
D
V
T
V
T
C
E
K
-----------------
D
M
I
-
L
L
R
K
G
S
F
T
A
--
S
F
--
R
I
A
V
-------------
E
NESI
R
----
S
M
A
I
D
L
N
AFEVEL
Q
P
I
I
Q
Y
A
E
D
T
Q
-
N
V
N
V
A
M
---
M
A
V
V
-------
Q
F
--
L
R
I
K
E
L
---------
H
E
Q
M
I
-----
S
K
I
V
--------
E
A
-
S
-
K
F
----
I
R
A
--
S
N
N
--
T
I
-
T
L
---
N
------------
D
L
-------------
E
V
S
F
H
C
Y
W
N
LPSP
Y
P
E
T
L
I
L
T
N
--
K
V
Q
K
I
L
D
F
L
I
Y
Q
Y
G
I
Q
L
G
V
I
K
Y
G
S
TI------------------
30
Fugue
48.63
13%
38
- C4 -
1JWQ
1
?
A:
[1-179]
-----------------------------M
K
V
V
V
I
D
AGHGAKDSGAVG
I
S
R
K
N
Y
E
K
T
F
--------
N
----
L
A
M
A
L
K
V
E
S
I
L
K
Q
N
P
K
L
E
V
V
L
T
R
S
D
-
D
T
F
L
E
L
K
Q
R
V
K
--------
V
A
E
N
L
KAN
V
F
V
S
I
H
A
N
S
----------------------
S
G
S
S
A
S
N
G
--
T
E
--
T
Y
Y
Q
-------------
R
----
S
----
A
S
K
A
---------------
F
A
N
V
M
-
H
K
Y
F
A
P
---
A
T
G
L
-------
T
D
--
R
G
I
R
Y
G
---------
N
F
H
V
I
-----
R
E
T
T
--------
M
P
-
A
-
V
L
----
L
E
V
--
G
Y
L
--
S
--
N
A
---
K
------------
E
E
-------------
A
T
L
F
D
E
D
F
Q
-----------
N
R
--
V
A
Q
G
I
A
D
G
I
T
E
Y
L
D
V
K----------------------------
14
HHSearch
47.66
13%
-30
- C5 -
3J25
-
TET1_ENTFL
A:
[358-408]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
--------
L
L
-
D
-
A
L
----
L
E
I
--
S
D
S
D
P
L
L
-
R
Y
YVD
S
------------
T
T
-------------
H
E
I
I
L
S
F
L
G
-----------
K
V
--
Q
M
E
V
I
S
A
L
L
Q
E
K
Y
H
V
-----------------------------
17
HHSearch
43.19
31%
-53
- C5 -
3E0J
-
DPOD3_HUMAN
B:
[55-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
Q
L
H
V
T
Y
---
L
V
S
G
-------
S
L
I
Q
N
G
H
S
C
H
---------
K
V
A
V
V
-----
R
E
D
K
--------
L
E
-
A
-
V
K
----
S
K
L
--
A
V
T
--
A
S
-
I
H
---
V
------------
Y
S
-------------
I
Q
K
A
M
L
K
D
S
-----------
G
P
--
L
F
N
T
D
Y
D
I
L
K
S
N
L
Q
N
-----------------------------
8
PsiBlast_PDB
43.17
26%
42
- C6 -
4HO6
2
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
5
PsiBlast_PDB
42.63
26%
37
- C6 -
4HO3
3
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
11
PsiBlast_PDB
42.56
26%
42
- C6 -
4HOC
2
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
HG
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
G
E
L
-
E
I
T
D
V
N
---
K
A
Y
L
-------
E
L
--
G
E
L
H
V
E
---------
L
L
G
R
G
-----
F
A
W
L
--------
D
T
-
G
-
T
H
----
E
S
L
--
L
Q
A
--
S
Q
-
F
I
---
E
------------
T
I
-------------
E
K
R
Q
S
L
K
V
A
-----------
C
L
--
E
E
I
A
Y
R
M
G
Y
I
S
R
E
Q
L
-----------------------------
4
PsiBlast_PDB
42.55
26%
41
- C6 -
4HO2
3
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
9
PsiBlast_PDB
41.21
26%
36
- C6 -
4HO8
4
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
10
PsiBlast_PDB
41.12
26%
47
- C6 -
4HO9
4
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
6
PsiBlast_PDB
40.64
26%
44
* C6 *
4HO4
4
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
7
PsiBlast_PDB
39.69
26%
45
- C6 -
4HO5
3
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
H
G
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
E
K
G
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------
18
HHSearch
39.42
11%
-19
- C5 -
2H5E
-
RF3_ECOLI
A:
[432-459]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
-------------
N
D
L
I
V
G
A
V
G
-----------
V
L
--
Q
F
D
V
V
V
A
R
L
K
S
E
Y
N
V
-----------------------------
16
HHSearch
38.40
17%
-19
- C5 -
3VQT
-
RF3_DESVM
A:
[448-477]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
---
L
------------
V
N
-------------
N
D
Y
I
L
G
A
V
G
-----------
V
L
--
Q
F
D
V
I
V
A
R
L
A
D
E
Y
G
V
-----------------------------
3
PsiBlast_PDB
37.77
26%
40
- C6 -
4HO0
-
?
A:
[108-182]
------------------------------------------------------
D
N
I
F
Y
G
HG
F
T
E
L
L
----
Q
R
A
A
N
R
K
S
G
A
T
--
I
F
G
Y
N
V
K
-
D
P
Q
R
-
F
G
V
V
E
F
D
---
K
--------
V
I
S
------
I
E
E
K
P
E
E
P
-----------------
K
S
S
-
Y
A
V
T
G
L
Y
F
Y
--
D
N
--
R
V
V
D
-------------
I
----
A
----
K
N
I
T
---------------
P
S
A
R
G
-
E
L
E
I
T
D
---
V
N
K
A
-------
Y
L
--
E
L
G
E
L
H
---------
V
E
L
L
G
-----
R
G
F
A
--------
W
L
-
D
-
T
G
----
T
H
E
--
S
L
L
--
Q
A
-
S
Q
---
F
------------
I
E
-------------
T
I
E
K
R
Q
S
L
K
-----------
V
A
--
C
L
E
E
I
A
Y
R
M
G
Y
I
S
R
E
-----------------------------