@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0655: (2015-12-03 )
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYKYAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.------------------.......-----30----.--........40........50........60......-..70.......------------.80........90......----------------..100...--....110.......120.....-..130--.....-..140.......150.......160......-------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFVNGGQ
L
K
KINQ
K
W
L
I
I
G
T
G
L
------------------
L
L
F
M
M
M
L
-----
P
-----
S
--
I
I
L
L
A
K
M
T
I
G
L
V
M
V
L
V
V
A
I
A
I
K
I
A
S
K
T
I
S
N
V
L
E
DKQ-A
D
P
N
Q
L
T
S
Q
T
T
------------
Q
S
R
I
I
N
L
A
V
G
L
V
S
I
F
TGG
L
----------------
S
L
L
I
I
AKT--
G
I
A
V
I
C
A
A
V
V
T
L
A
I
Y
E
Y
A
K
DYK-YA
E
D
K
--
E
I
G
K
S
-
I
N
D
K
L
D
E
I
A
K
N
T
T
N
F
I
V
S
G
I
E
K
LVSPQEQQV-------------------------------------------------------------------------------------------------------------------------------
21
Fugue
79.18
14%
-54
- C2 -
4DOX
-
CAPSD_PMV
A:
[11-174]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
F
P
A
I
T
Q
E
Q
M
S
S
I
K
V
D
P
T
S
N
L
------------------
L
-----------
P
-----
S
--
Q
E
Q
L
K
S
V
S
T
L
M
V
A
A
K
V
P
A
A
S
V
T
T
V
A
L
E
L
V
N
F
C
Y
D
N
G
-
S
S
A
Y
T
T
V
T
G
P
S
------------
S
I
P
E
I
S
L
A
Q
L
A
S
I
V
K
A
S
G
T
----------------
S
L
R
K
F
C
R
Y
--
F
A
P
I
I
W
N
L
R
T
D
K
M
A
P
A
N
W
E
A
S
G
-
Y
--
K
P
--
S
A
K
F
A
-
A
F
D
F
F
D
G
V
E
N
P
A
A
M
Q
P
P
S
G
L
T
R
S
P
T
Q
E
E
R
I
A
N
A
T
N---------------------------------------------------------------------------------------------------------------------------
25
Fugue
78.83
11%
-131
- C1 -
3IF8
-
?
B:
[339-590]
--------------------------------------------------------------------------------------------------------------------------------------------------------------LFKVRSDLD
F
A
E
Q
L
W
C
K
M
S
S
S
V
I
S
Y
Q
D
L
V
K
C
F
T
L
I
I
Q
S
L
Q
R
GD
I
Q
P
W
L
H
S
GSNS
L
L
S
K
L
I
H
Q
S
Y
-----
H
-----
G
--
T
M
D
T
V
S
L
S
G
T
I
P
V
Q
M
L
L
E
I
G
L
D
K
L
K
K
D
Y
I
S
F
F
I
G
Q
E
L
A
S
L
N
H
L
E
Y
F
I
A
------------
P
S
V
D
I
Q
E
Q
V
Y
R
V
Q
K
L
H
H
I
L
----------------
E
I
L
V
S
C
M
P
FI
K
S
Q
H
E
L
L
F
S
L
T
Q
I
C
I
K
Y
Y
K
Q
N
P
-
L
D
E
Q
H
--
I
F
Q
L
P
-
V
R
P
T
A
V
K
N
L
Y
Q
S
E
K
P
Q
K
W
R
V
E
I
Y
S
G
Q
K
K
I
K
T
V
W
Q
L
S
DSSPIDHLNFHR
I
F
F
T
N
M
V
T
C
S
Q
V
H
F------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
67.59
28%
-47
- C2 -
4R84
2
?
A:
[343-415]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
E
Q
L
Q
Q
Q
Y
S
------------
Q
S
P
L
P
N
F
I
F
T
G
T
T
T
W
A
G
G
E
----------------
T
K
E
Y
Y
A
Q
Q
--
Q
V
N
V
I
N
N
A
I
N
E
T
S
P
Y
Y
L
G
K
D
Y
D
L
F
F
K
G
H
--
P
A
G
G
V
-
I
N
D
I
I
L
G
S
F
P
D
M
I
N
I
P
A
K
I
S
F
E
V
L
M
M
T
D
M
L
P
-------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
67.45
28%
-45
- C2 -
4R83
1
?
A:
[343-415]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
E
Q
L
Q
Q
Q
Y
S
------------
Q
S
P
L
P
N
F
I
F
T
G
T
T
T
W
A
G
G
E
----------------
T
K
E
Y
Y
A
Q
Q
--
Q
V
N
V
I
N
N
A
I
N
E
T
S
P
Y
Y
L
G
K
D
Y
D
L
F
F
K
G
H
--
P
A
G
G
V
-
I
N
D
I
I
L
G
S
F
P
D
M
I
N
I
P
A
K
I
S
F
E
V
L
M
M
T
D
M
L
P
-------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
65.41
28%
-39
- C2 -
4R9V
1
?
A:
[246-318]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
E
Q
L
Q
Q
Q
Y
S
------------
Q
S
P
L
P
N
F
I
F
T
G
T
T
T
W
A
G
G
E
----------------
T
K
E
Y
Y
A
Q
Q
--
Q
V
N
V
I
N
N
A
I
N
E
T
S
P
Y
Y
L
G
K
D
Y
D
L
F
F
K
G
H
--
P
A
G
G
V
-
I
N
D
I
I
L
G
S
F
P
D
M
I
N
I
P
A
K
I
S
F
E
V
L
M
M
T
D
M
L
P
-------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.09
25%
-68
- C2 -
1L7V
-
BTUC_ECOLI
A:
[63-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
L
V
G
A
A
L
A
I
S
G
A
V
M
Q
A
L
F
E
N
P
L
-
A
E
P
G
L
L
G
V
S
N
G
A
G
V
G
L
I
A
A
V
L
L
G
Q
G
Q
L
P
N
W
A
L
G
L
C
A
I
-
A
G
A
L
I
I
T
L
I
L
L
R
F
A
R
R
HLS
T
S
R
L
L
L
A
G
V
--
A
L
G
I
I
C
S
A
L
M
T
W
A
I
Y
F
S
T
S
V
D
L
-
R
Q
L
M
Y
--
W
M
M
G
G
-
F
G
G
V
D
W
R
Q
S
W
L
M
L
A
L
I
P
V
L
L
W
I
C
C
Q
S
R
P
M
N
M
-------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
55.05
31%
-133
- C2 -
3B60
-
MSBA_SALTY
A:
[156-209]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
I
M
M
F
YYS
W
Q
L
-----
S
--
I
I
L
V
-------
V
L
A
P
I
V
S
I
A
I
R
V
V
S
K
R
F
R
S
I
S
K
N
M
Q
-
N
T
M
G
Q
V
T
T
S
A
E
------------
Q
M
L
K
G
H
K
E
V
L
I
F
G
G
Q
E
V
E
T
----------------
K
R
F
D
K
V
S
N
--
K
M
R
L
Q
G
M
K
M
V
S
A
S
S
I
S
D
P
I
I
Q
L
-
I
A
S
L
A
--
L
A
F
V
L
-
Y
A
A
S
F
P
S
V
M
D
S
L
T
A
G
T
I
T
V
V
F
S
S
M
I
A
L
M
R
P
L
-------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.44
32%
-69
- C- -
3B5W
-
MSBA_ECOLI
A:
[156-209]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
I
M
M
F
-----
Y
YSWQL
S
--
I
I
L
I
-------
V
L
A
P
I
V
S
I
A
I
R
V
V
S
K
R
F
R
N
I
S
K
N
M
Q
-
N
T
M
G
Q
V
T
T
S
A
E
------------
Q
M
L
K
G
H
K
E
V
L
I
F
G
G
Q
E
V
E
T
----------------
K
R
F
D
K
V
S
N
--
R
M
R
L
Q
G
M
K
M
V
S
A
S
S
I
S
D
P
I
I
Q
L
-
I
A
S
L
A
--
L
A
F
V
L
-
Y
A
A
S
F
P
S
V
M
D
S
L
T
A
G
T
I
T
V
V
F
S
S
M
I
A
L
M
R
P
L
-------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.11
31%
-73
- C- -
3B5Z
-
MSBA_SALTY
A:
[156-209]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
I
M
M
F
Y
Y
SWQ
L
-----
S
--
I
I
L
V
-------
V
L
A
P
I
V
S
I
A
I
R
V
V
S
K
R
F
R
S
I
S
K
N
M
Q
-
N
T
M
G
Q
V
T
T
S
A
E
------------
Q
M
L
K
G
H
K
E
V
L
I
F
G
G
Q
E
V
E
T
----------------
K
R
F
D
K
V
S
N
--
K
M
R
L
Q
G
M
K
M
V
S
A
S
S
I
S
D
P
I
I
Q
L
-
I
A
S
L
A
--
L
A
F
V
L
-
Y
A
A
S
F
P
S
V
M
D
S
L
T
A
G
T
I
T
V
V
F
S
S
M
I
A
L
M
R
P
L
-------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.75
31%
-69
- C- -
3B5Y
-
MSBA_SALTY
A:
[156-209]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
I
M
M
F
Y
YS
W
Q
L
-----
S
--
I
I
L
V
-------
V
L
A
P
I
V
S
I
A
I
R
V
V
S
K
R
F
R
S
I
S
K
N
M
Q
-
N
T
M
G
Q
V
T
T
S
A
E
------------
Q
M
L
K
G
H
K
E
V
L
I
F
G
G
Q
E
V
E
T
----------------
K
R
F
D
K
V
S
N
--
K
M
R
L
Q
G
M
K
M
V
S
A
S
S
I
S
D
P
I
I
Q
L
-
I
A
S
L
A
--
L
A
F
V
L
-
Y
A
A
S
F
P
S
V
M
D
S
L
T
A
G
T
I
T
V
V
F
S
S
M
I
A
L
M
R
P
L
-------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
50.03
23%
-101
- C2 -
2OER
-
?
A:
[21-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
L
------------
V
A
S
I
L
E
A
A
V
Q
V
------------------------
Q
R
F
---
T
T
--
A
R
V
A
E
R
A
G
V
S
I
G
S
L
Y
Q
Y
F
P
N
K
A
-
A
I
L
F
R
--
L
Q
S
D
E
-
W
R
R
T
T
R
L
L
G
E
I
L
E
D
T
T
R
P
P
L
E
R
L
R
R
L
V
L
A
F
V
-------------------------------------------------------------------------------------------------------------------------------
17
Fugue
49.36
12%
-65
- C2 -
5DA0
2
?
A:
[14-484]
QREWFAN
P
R
K
D
V
L
A
G
I
V
V
A
L
A
L
I
P
E
A
I
A
F
S
I
I
A
GVD
P
Q
V
G
L
Y
A
S
F
I
I
A
L
I
T
A
F
LGGRPG
M
I
S
A
A
T
G
A
M
A
L
L
M
T
G
L
V
K
D
HGIQY
L
F
A
A
T
V
L
T
G
V
L
Q
V
V
F
G
W
A
KLARYLKFVP
R
S
V
M
V
G
F
V
N
A
L
A
I
L
I
F
M
A
Q
LPQFVGAN
W
Q
M
Y
A
M
V
A
A
G
L
A
I
I
Y
L
L
P
L
V
F
KAMP
S
A
L
V
A
I
V
V
L
T
V
V
A
V
V
T
G
A
D
V
K
T
V
G
D
M
G
T
L
P
T
A
L
P
------------------
H
F
Q
F
P
Q
V
-----
P
-----
L
T
F
E
T
L
A
I
I
F
P
V
A
L
T
L
S
L
V
G
L
L
E
S
L
L
T
A
Q
L
I
D
E
R
T
D
T
T
S
-
D
K
N
V
E
S
R
G
Q
G
V
------------
A
N
I
V
T
G
F
F
G
G
M
A
G
C
A
M
I
G
Q
----------------
S
M
I
N
V
T
S
G
--
G
R
G
R
L
S
T
F
V
A
G
A
F
L
M
V
L
I
L
A
L
Q
-
P
L
L
V
Q
--
I
P
M
A
A
-
L
V
A
V
M
M
V
V
A
I
S
T
F
D
W
-----
G
S
L
R
F
P
K
G
E
T
V
V
M
L
A
T
V
A
V
T
V
F
T
HD
L
S
L
G
V
L
I
G
V
V
L
S
A
L
F
F
A
R
K
V
SQL
S
Q
V
T
P
V
D
E
VDG
T
R
T
Y
R
V
R
G
Q
LFFVS
T
H
D
F
L
H
Q
F
DFTHPAR
R
V
V
I
D
LSD
A
H
F
WD
G
S
A
V
G
A
L
D
K
V
M
L
K
F
M
R
Q
G
T
S
V
E
L
R
GL
N
A
A
S
A
T
LVERL
15
HHSearch
48.29
15%
-119
- C2 -
3KNW
-
?
A:
[12-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
A
K
------------
R
Q
H
I
L
D
S
G
F
H
L
V
L
--
R
K
G
F
----------------
V
G
V
---
G
L
--
Q
E
I
L
K
T
S
G
V
P
K
G
S
F
Y
H
Y
F
E
S
K
E
-
A
F
G
C
E
--
L
L
K
H
Y
-
I
S
D
Y
Q
I
R
L
N
Q
L
W
T
T
E
T
S
A
R
D
K
L
M
N
Y
L
Q
C
W
V
K
-------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
44.95
35%
39
- C2 -
1RTW
1
?
A:
[72-111]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
Y
Y
I
S
K
E
L
E
-
M
F
E
K
K
A
Q
E
L
G
I
S
-
L
N
G
E
I
D
W
R
A
K
S
Y
V
N
Y
L
L
S
V
A
S
L
G
S
F
L
E
G
F
T
A
-------------------------------------------------------------------------------------------------------------------------------
18
Fugue
44.41
25%
81
- C2 -
1PGY
-
A:
[1-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
V
D
E
V
K
D
M
E
-
I
A
R
L
M
--
S
L
G
L
S
-
I
E
E
A
T
E
F
Y
E
N
D
V
T
Y
--
E
R
Y
L
E
I
L
K
S
K
Q
K
E
---------------------------------------------------------------------------------------------------------------------------------
26
Fugue
43.60
28%
-20
- C2 -
1HGV
-
CAPSD_BPH75
A:
[1-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
-
F
N
P
S
E
V
A
S
Q
V
T
------------
N
Y
----------------------------------
I
Q
A
I
A
A
A
--
G
V
G
V
L
A
L
A
I
G
L
S
A
A
W
K
Y
A
K
R
F
L
-
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
40.05
21%
61
- C2 -
2K6O
-
A:
[1-37]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
G
D
F
F
R
K
S
K
E
K
I
-
G
K
E
F
K
--
R
I
V
Q
R
-
I
K
D
F
L
R
N
L
V
P
R
T
E
S
------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.17
14%
67
- C2 -
3PMD
-
?
A:
[113-148]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
V
V
I
E
Q
-
I
N
L
F
F
D
H
L
I
Y
S
T
I
Y
S
Y
Y
K
L
K
K
E
Y
I
H
S
Y
Y
E
L
K
-------------------------------------------------------------------------------------------------------------------------------
19
Fugue
35.73
20%
141
- C2 -
2IBF
-
IPAA_SHIFL
B:
[1-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
H
A
I
-
Y
E
K
A
K
--
E
V
S
S
A
-
L
S
K
V
L
S
K
I
D
D
T
---------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
35.28
9%
69
- C2 -
3FY6
-
?
A:
[78-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
E
W
R
K
G
--
A
L
D
N
D
E
V
T
R
E
L
E
L
V
A
Q
W
-----
V
N
K
V
T
E
A
K
P
N
S
D
F
W
R
-------------------------------------------------------------------------------------------------------------------------------