@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0682: (2015-12-03 )
MYNIKLYYSSYLRYNIRSSLYIPFKPNILVKLDILKNEVLSLKTVSPEKVVEVSNLIDKFRLKILTDFQNFEKQWFQEFKNTWKQKLMPNMRSEYLGLHCTKIY
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...----.....20......----..30........40.......--.50.....-..-.60........--70------........80........90........100..-------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Y
N
I
K
L
Y
Y
SS
Y
L
R
Y
----NIRS
S
L
Y
IPFKP
N
----
I
L
V
K
L
D
ILKNE
V
L
S
L
KTV
S
P
E
--
K
V
V
E
V
S
N
L
-
I
D
-
K
F
R
L
K
I
L
T
D
F
Q
--
N
F
------
E
K
Q
W
F
Q
E
F
K
N
T
W
K
Q
K
L
M
P
N
M
R
S
E
Y
LG
L
H
C
T
KIY-------------------------------------------------------------------------------------------------------
42
Fugue
72.90
20%
-91
- C4 -
3FBL
1
Y132_AFV1Y
A:
[1-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
K
L
R
L
A
I
K
E
I
C
K
T
D
GIP
N
I
K
W
G
M
Y
I
A
F
G
E
K
----
L
L
K
S
Y
L
K
M
K
A
G
S
A
S
--------------
S
D
M
-
I
A
-
E
Y
I
N
N
A
I
S
A
F
S
--
S
R
-----------
T
G
I
S
Q
E
T
A
Q
K
I
A
D
F
I
T
S
N
Y
----------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
68.77
24%
-119
- C4 -
4JIH
1
AK1BA_HUMAN
A:
[250-298]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
V
L
Q
S
S
H
L
E
D
Y
P
F
D
A
E
Y
----------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
68.75
24%
-122
- C4 -
1ZUA
1
AK1BA_HUMAN
X:
[249-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
V
L
Q
S
S
H
L
E
D
Y
P
F
N
A
E
Y
----------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
68.54
24%
-113
- C4 -
4GQG
1
AK1BA_HUMAN
A:
[250-298]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
V
L
Q
S
S
H
L
E
D
Y
P
F
D
A
E
Y
----------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
68.41
24%
-122
- C4 -
4I5X
1
AK1BA_HUMAN
A:
[250-298]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
V
L
Q
S
S
H
L
E
D
Y
P
F
D
A
E
Y
----------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
68.18
24%
-122
- C4 -
4GQ0
1
AK1BA_HUMAN (first)
A:
[250-298]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
V
L
Q
S
S
H
L
E
D
Y
P
F
D
A
E
Y
----------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
67.30
24%
-120
- C4 -
4JII
2
AK1BA_HUMAN
X:
[250-298]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
V
L
Q
S
S
H
L
E
D
Y
P
F
D
A
E
Y
----------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
65.80
22%
-118
- C4 -
1T40
1
ALDR_HUMAN
A:
[248-296]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
P
M
Q
R
N
L
V
V
I
P
K
S
V
T
P
E
--
R
I
A
E
N
F
K
V
-
F
D
F
E
L
S
S
Q
D
M
T
T
L
L
--
S
Y
------
N
R
N
W
R
V
C
A
L
L
S
C
T
S
H
K
D
Y
P
F
H
E
E
F
----------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
65.38
24%
-121
- C4 -
4GA8
1
AK1BA_HUMAN
A:
[248-296]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
L
L
Q
S
S
H
L
E
D
Y
P
F
N
A
E
Y
----------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
65.04
24%
-121
- C4 -
4GAB
1
AK1BA_HUMAN
A:
[248-296]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
H
I
Q
R
N
V
I
V
I
P
K
S
V
T
P
A
--
R
I
V
E
N
I
Q
V
-
F
D
F
K
L
S
D
E
E
M
A
T
I
L
--
S
F
------
N
R
N
W
R
A
C
N
L
L
Q
S
S
H
L
E
D
Y
P
F
N
A
E
Y
----------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
64.98
22%
-120
- C4 -
1EL3
1
ALDR_HUMAN
A:
[248-296]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
P
M
Q
R
N
L
V
V
I
P
K
S
V
T
P
E
--
R
I
A
E
N
F
K
V
-
F
D
F
E
L
S
S
Q
D
M
T
T
L
L
--
S
Y
------
N
R
N
W
R
V
C
A
L
L
S
C
T
S
H
K
D
Y
P
F
H
E
E
F
----------------------------------------------------------------------------------------------------------------
39
Fugue
64.51
20%
-77
- C2 -
2Y26
-
POL2_GFLV
A:
[1-504]
GLA
G
R
G
V
I
Y
I
P
KDCQANRYL
G
T
L
N
I
R
D
M
I
S
D
F
KG
V
Q
Y
E
K
W
I
T
A
GLVMPT
F
K
I
V
I
R
L
P
ANAFTG
L
T
W
V
M
S
F
DAYNRITSRITASAD
P
V
Y
T
L
S
V
P
H
W
L
I
H
HKL
G
T
F
S
C
E
I
DYGELCG
H
A
M
W
FKSTTF
E
S
P
R
L
H
F
T
C
LTGNNKELA
A
D
W
Q
A
V
V
E
L
Y
A
ELEEATSFLGKPTLVFDPGVFNGKFQFLTCP
P
I
F
F
D
LTAV
T
A
L
R
S
A
G
LTLG
Q
V
P
M
V
GT
T
K
V
Y
N
L
N
S
T
L
V
S
CVL
G
M
G
G
T
V
R
G
R
V
H
ICAPIF
Y
S
I
V
L
W
V
V
S
E
W
NGTTMD
W
N
E
L
F
K
Y
P
G
V
Y
V
E
E
D
G
S
F
E
V
K
IRSPYHRTPARL
L
A
D
Q
S
Q
R
D
M
S
S
L
N
F
----
Y
A
I
A
G
P
I
A
P
S
G
E
T
A
Q
L
P
I
V
V
Q
I
D
E
I
V
R
P
D
L
S
L
P
S
F
E
D
D
Y
F
V
W
V
D
F
S
E
F
T
L
D
-
K
E
E
I
E
I
G
S
R
F
F
--
D
F
------
T
S
N
---
T
C
R
V
S
M
G
E
N
P
F
A
A
M
I
A
-
C
H
G
L
H
S
G
V
L
D
L
K
L
Q
W
S
L
NTEFGK
S
S
G
S
V
T
I
T
K
L
V
G
DKA
M
G
L
D
G
P
S
H
V
F
AIQKL
E
G
T
T
E
L
L
VGNFAGANPN
T
R
F
S
L
Y
S
R
W
M
A
I
K
L
DQAKSIK
V
L
R
V
L
C
K
P
R
PGF
S
F
Y
G
R
T
S
F
P
V
19
PsiBlast_PDB
64.28
22%
-105
- C4 -
1IEI
1
ALDR_HUMAN
A:
[248-296]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
R
F
P
M
Q
R
N
L
V
V
I
P
K
S
V
T
P
E
--
R
I
A
E
N
F
K
V
-
F
D
F
E
L
S
S
Q
D
M
T
T
L
L
--
S
Y
------
N
R
N
W
R
V
C
A
L
L
S
C
T
S
H
K
D
Y
P
F
H
E
E
F
----------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.03
27%
-43
- C4 -
3LDZ
-
STAM1_HUMAN
A:
[77-131]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
I
F
H
L
E
V
C
S
R
D
--
F
A
S
E
V
S
N
V
-
L
N
-
K
G
H
P
K
V
C
E
K
L
K
--
A
L
------
M
V
E
W
T
D
E
F
K
N
D
P
Q
L
S
L
I
S
A
M
I
K
N
L
K
E
Q
G
V
T
F
P
--------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
62.81
24%
-28
- C4 -
2EXR
1
CKX7_ARATH
A:
[421-499]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
----
D
D
R
T
S
V
V
I
P
E
E
G
E
----
I
F
Y
I
V
A
L
L
R
F
V
P
P
C
A
K
V
S
S
V
E
--
K
M
V
A
Q
N
Q
E
-
I
V
-
H
W
C
V
K
N
G
I
D
Y
K
--
L
Y
LPHYKS
Q
E
E
W
I
R
H
F
G
N
R
W
S
R
F
V
D
R
K
A
M
F
D
P
M
A
I
L
S
P
G
Q
K
-------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
61.00
24%
-26
- C4 -
2Q4W
1
CKX7_ARATH
A:
[421-499]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
----
D
D
R
T
S
V
V
I
P
E
E
G
E
----
I
F
Y
I
V
A
L
L
R
F
V
P
P
C
A
K
V
S
S
V
E
--
K
M
V
A
Q
N
Q
E
-
I
V
-
H
W
C
V
K
N
G
I
D
Y
K
--
L
Y
LPHYKS
Q
E
E
W
I
R
H
F
G
N
R
W
S
R
F
V
D
R
K
A
M
F
D
P
M
A
I
L
S
P
G
Q
K
-------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.46
30%
-37
- C4 -
4CI2
-
CRBN_CHICK
B:
[106-156]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
V
L
P
H
----
V
M
V
M
L
--
I
P
G
Q
T
L
P
L
Q
L
F
H
P
Q
--
E
V
S
M
V
R
N
L
-
I
Q
-
K
D
R
T
F
A
V
L
A
Y
S
--
N
V
------
R
E
R
-------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.97
30%
-31
- C4 -
4CI3
-
CRBN_CHICK
B:
[106-156]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
V
L
P
H
----
V
M
V
M
L
--
I
P
G
Q
T
L
P
L
Q
L
F
H
P
Q
--
E
V
S
M
V
R
N
L
-
I
Q
-
K
D
R
T
F
A
V
L
A
Y
S
--
N
V
------
R
E
R
-------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
53.56
33%
-35
- C4 -
1NH2
-
TOA1_YEAST
B:
[19-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
R
E
D
F
E
N
A
G
I
------
D
E
Q
T
L
Q
D
L
K
N
I
W
Q
K
K
L
T
E
----------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
52.07
30%
-37
- C4 -
4CI1
-
CRBN_CHICK
B:
[106-152]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
V
L
P
H
----
V
M
V
M
L
--
I
P
G
Q
T
L
P
L
Q
L
F
H
P
Q
--
E
V
S
M
V
R
N
L
-
I
Q
-
K
D
R
T
F
A
V
L
A
Y
S
--
N
V
------
R
E
R
-------------------------------------------------------------------------------------------------------------------------------------