@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0733: (2015-12-04 )
MLRLLCEIEYEVRGMENIPKYPFVIASKHQSPLETFIFILLFRNAVFILKRELKWIPFIGLHLMALRMIFINRSDGINAMRHIIKLARMRIAENRSIIIFPEGTRTAAKQKTKYQPGIAALYSVLSVPVLPVALNTGLFWPKSILSMRRNPGKAVIEILPPIYHGLNKNEFLKNLEKTIEERSNKLTAEKN
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------.......-----..10.-.......--------20........30.......----.40.--------.--------...------...-50........60---........70.....------------..------.80........90-...------..------...----100----.........110----..------..-----..---------.----.-----.120.....------.--.130-----.........140---.....-..150.......-.160...-.---------...170.......180.......190------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------M
L
R
L
L
C
E
-----
I
E
Y
E
V-RGMENIP--------KY
P
F
V
I
ASKHQS
P
L
E
T
F
I
F
----
I
L
L
F
--------
R
--------
N
A
V
------
F
I
L
-
K
R
ELKWI
P
F
I
G
L
---
H
L
M
A
L
R
M
I
FINRSD
G
------------
I
N
------
A
M
R
H
I
I
K
L
A
R
M
R
I-AEN------
R
S
------
I
I
I
----F------PEGTR
T
A
AKQ------KT------KY-----Q
P
---------
G
----
I
-----
A
A
L
Y
S
V
L
SV------P--
V
L
-------
P
V
A
LNTGLFW
P
K
---
S
I
L
SM-RRNP-
G
K
A
V
I
E
I
-
L
P
P
I
Y
HG-L---------
N
K
N
E
F
L
K
N
L
E
K
T
I
E
E
RSNKLTAEKN-------------------------------------------------------------------------
10
HHSearch
89.10
18%
-89
- C3 -
1IUQ
8
PLSB_CUCMO
A:
[109-347]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
S
F
V
-
G
N
L
S
L
F
K
D
I
E
E
K
L
Q
Q
G
H
N
V
V
L
I
S
N
H
Q
T
E
A
D
P
A
I
I
----
S
L
L
L
--------
E
KTN
P
Y
I
A
E
N
T
I
------
F
V
A
-
G
D
R
V
L
A
D
P
L
C
K
P
---
F
S
I
G
R
N
L
I
C
V
Y
S
K
K
H
MFDIPEL
T
E
T
K
R
K
A
------
N
T
R
S
L
-
K
E
M
A
L
L
L
R
G
G
S
------
Q
L
------
I
W
I
----
A
------
P
S
G
G
R
D
R
P
D
P
STGEWY
P
A
------
P
F
-----
D
A
---------
S
S
V
D
N
M
-----
R
R
L
I
Q
H
S
D
V
------
P
G
H
L
F
-------
P
L
A
L
L
C
H
D
I
M
P
P
---
P
----R
V
I
A
F
-
N
G
A
G
L
S
V
-
A
P
E
I
S
F
E
E
I
A
A
T
HKN
P
E
E
V
R
E
A
Y
S
K
A
L
F
D
S
V
A
M
Q
Y
N
V
L
K
T
A
I
S
-------------------------------------------------------------------------
20
Fugue
75.93
21%
-99
- C2 -
1O9W
1
F17AG_ECOLX
A:
[1-176]
----------------------------------------------------------------------------------------------------------------------------------------------------
A
V
S
F
I
G
S
-----
T
E
N
D
V
G
P
S
L
G
S
Y
S
--------
R
L
P
F
V
Y
D
T
R
N
K
------------
I
G
Y
Q
--------
N
--------
A
N
V
------
W
H
I
-
S
K
G
F
----
C
V
G
L
---
D
G
K
V
-
D
L
P
V
V
G
S
L
D
G
----------------------
Q
S
I
Y
G
L
T
------
E
E
------
V
G
------
L
L
I
----
W
M
G
D
TKY
S
R
G
T
A
M
S
G
N
S
------
W
E
------
N
V
-----
F
S
---------
G
----
W
C
V
G
AN
T
A
S
T
Q
G
L
S
V
------
R
--
V
T
-------
P
V
I
L
K
R
N
----
S
---
A
R
Y
S
V
-
Q
K
----
T
S
I
G
S
I
-
R
M
R
P
Y
N
G
-
S
---------
S
A
G
S
----
V
Q
T
T
V
N
F
S
L
N
P
F
T
L
N
D
--------------------------------------------------------------------------
19
Fugue
66.32
16%
-93
* C3 *
1K30
-
PLSB_CUCMO
A:
[3-368]
-----------------------------------SHSRKFLDVRS
E
E
E
L
L
S
C
I
K
K
E
T
E
A
GKLP
P
N
V
A
A
G
M
E
E
L
Y
Q
N
Y
R
N
A
V
I
E
S
GNPK
A
D
E
I
V
L
S
N
M
T
V
A
L
D
R
I
L
L
D
V
E
D
P
F
V
F
S
SHHKAIREPFD
Y
Y
I
F
G
Q
N
Y
I
RPLIDFGN
S
F
V
G
N
L
S
L
F
K
D
-----
I
E
E
K
L
-
Q
-----
Q
--------
G
H
N
V
V
L
I
S
N
H
Q
T
E
A
D
P
A
I
I
----
S
L
L
L
EKTN
P
Y
I
A
E
--------
N
T
I
------
F
V
A
-
G
D
R
V
L
A
D
P
L
C
K
P
---
F
S
I
G
R
N
L
I
C
V
Y
S
K
K
H
------------
M
F
DIPEL
T
E
T
K
R
K
A
N
T
R
S
L
K
E
-
M
A
L
------
L
L
R
G
GS
Q
L
I
W
I
----
A
------
P
S
G
G
R
D
R
P
D
P
------
S
T
GEWYPA
P
F
-----
D
A
---------
S
----
S
-----
V
D
N
M
R
R
L
I
Q
H
S
D
V
P
G
H
--
L
F
-------
P
L
A
L
L
C
-----
H
---
D
I
M
P
P
-
P
S
Q
V
-
E
I
E
I
R
V
I
A
F
N
G
A
G
L
S
-
V
---------
A
P
E
I
S
F
E
E
I
A
A
T
H
K
N
P
E
E
V
R
E
A
Y
S
K
A
L
F
D
S
V
A
M
Q
Y
N
V
L
K
T
A
ISGKQGLGASTAD
V
S
L
S
Q
PW-------------------------------------
25
Fugue
60.84
17%
-45
* C5 *
4UPC
-
NICA_HUMAN
A:
[42-655]
IPLNKTAPCVCQSSIS
G
D
T
G
V
IHVVEK
E
E
D
L
Q
W
V
L
TDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAA
V
S
L
T
KPSPASGFSPNGLAYEDFS
F
P
I
F
L
L
E
D
E
N
E
T
K
V
I
N
L
S
Q
N
G
SC
A
M
Q
L
F
S
H
MT
A
T
C
M
R
R
S
S
I
Q
S
T
F
S
IV
C
D
P
L
S
D
Y
N
V
W
S
M
L
N
V
-----
V
V
A
A
T
-
R
-
L
D
S
R
S
---------
F
F
W
N
V
A
P
G
A
E
S
A
V
A
S
F
V
T
----
Q
L
A
A
--------
A
--------
E
A
L
Q
K
APDV
T
T
L
-
P
R
N
V
M
F
V
F
F
Q
G
E
TFD
Y
I
G
S
S
R
M
V
Y
D
M
E
K
G
P
------------
V
S
------
Q
K
N
E
S
V
R
L
--------
E
------
K
S
------
G
A
G
----
V
------
P
A
V
I
L
R
R
P
N
Q
------
S
Q
------
P
L
-----
P
P
------------------------
R
A
R
N
I
------
S
--
G
V
-------
V
L
A
D
H
S
G
A
F
H
N
K
YYQ
S
I
Y
D
T
-
A
E
N
I
-
N
V
S
Y
P
E
W
-
L
S
P
E
E
D
L
-
N
---------
F
V
T
D
T
A
K
A
L
A
D
V
A
T
V
L
G
R
A
L
Y
E
D
T
V
Q
A
D
PQTVTL
L
Y
G
F
L
IKPLQHYIAVVQY
A
L
A
N
L
T
G
T
V
V
N
LC
V
R
S
T
A
RLARAWSSTE
Y
S
T
W
T
E
S
R
W
K
D
I
R
A
R
IFL
24
Fugue
55.12
10%
-96
- C3 -
1TYG
1
THIG_BACSU
A:
[1-242]
---------------------------------------------------------------------------------------------------------------------------MLTIGGKSFQSR
L
L
L
G
TGKYPS
F
D
I
Q
K
E
A
V
A
V
S
ESD
I
L
T
F
A
V
-
R
R
M
N
I
F
E
--------
A
S
Q
P
N
F
L
E
Q
L
D
L
S
K
Y
T
L
L
P
N
TAG
A
S
T
A
--------
E
--------
E
A
V
------
R
I
A
-
R
L
A
K
A
S
G
L
C
D
M
I
---
K
V
E
----
V
I
G
C
S
R
S
L
------------
L
P
------
D
P
V
E
T
L
K
A
S
E
Q
L
L
-
E
E
G
------
F
I
------
V
L
P
----
Y
------
T
S
D
D
V
V
L
A
R
K
------
L
E
------
E
L
GVH
A
I
M
P
G
ASPIGSGQ
G
----
I
LN
P
--
L
N
L
S
F
I
I
E
Q
------
A
--
K
V
-------
P
V
I
V
D
A
G
I
-
G
S
P
---
K
D
A
A
Y
-
A
M
E
L
-
G
A
D
G
V
L
L
-
N
T
A
V
S
G
A
-
D
---------
D
P
V
K
M
A
R
A
M
K
L
A
V
E
A
G
R
L
S
Y
E
A
G
R
I
P
LKQY--------------------------------------------------------------------
26
Fugue
51.30
17%
-41
- C5 -
1FHO
-
A:
[1-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
D
------------
T
G
------
K
L
G
R
I
I
R
H
D
A
F
Q
V
-
W
E
G
DEPPKL
R
Y
------
V
F
L
----
F
------
R
N
-
K
I
M
F
T
E
Q
------
D
A
------
S
T
-----
S
P
---------
P
----
S
-----
Y
T
H
Y
S
S
I
R
L
------
D
-----------
K
Y
N
I
R
Q
H
T
T
D
E
D
---
T
I
V
L
Q
-
P
Q
E
P
-
G
L
P
S
F
R
I
-
K
P
K
D
F
E
------------
T
S
E
Y
V
R
K
A
W
L
R
D
I
A
E
E
Q
E
K
Y
A
A
E
R
D
-------------------------------------------------------------------------
9
PsiBlast_PDB
47.03
35%
-3
- C6 -
1V98
3
?
A:
[81-135]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
L
K
V
V
K
V
------
N
V
------
D
E
-----
H
P
---------
G
----
L
-----
A
A
R
Y
G
V
R
S
V
------
P
--
T
L
V
L
F
R
RGA
P
V
A
T
W
V
G
A
S
-
P
R
---
R
V
L
E
E
-
R
L
R
P
-
Y
L
E
G
R
-----------------------------------------------------------------------------------------------------------------------
28
Fugue
46.83
10%
-29
- C3 -
3SHO
-
?
A:
[96-281]
--------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
Q
-----
Q
L
P
V
Q
-
V
F
T
N
D
I
E
--------
N
L
N
Q
T
L
N
Q
T
Q
P
E
A
I
E
A
A
V
E
----
A
I
R
A
--------
D
--------
H
V
I
------
V
V
G
M
G
F
S
A
A
V
A
V
F
L
G
H
---
G
L
N
S
L
G
----
I
R
T
T
V
------------
L
T
------
E
G
G
S
T
L
T
I
T
L
A
N
L
-
R
P
T
------
D
L
M
-----
I
G
V
S
V
W
R
Y
------
L
R
D
T
V
A
A
L
A
G
------
A
A
------
E
R
-----
G
V
---------
P
----
T
M
----
A
L
T
D
S
S
V
S
-------
P
--
P
A
-------
R
I
A
--
D
H
V
L
V
A
A
---
T
R
G
V
G
-
H
S
L
S
-
P
V
G
L
I
A
V
-
V
N
L
L
L
A
E
-
I
---------
A
V
R
E
--
P
E
R
A
L
A
V
L
R
E
V
D
R
L
Y
R
E
Q
G
-------------------------------------------------------------------------
1
PsiBlast_PDB
43.13
29%
-50
- C6 -
3T7Y
9
?
A:
[29-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
K
A
P
W
I
I
A
M
G
V
---
N
L
R
A
K
R
I
I
A
E
A
E
K
Y
G
------------
V
P
------
I
M
R
N
-
V
P
L
A
H
Q
L
L
-
D
E
G
------
K
E
------
L
K
F
----
I
------
P
E
T
T
Y
E
A
V
G
E
------
I
L
------
L
Y
-----
I
T
---------
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
42.57
12%
-37
- C3 -
1ITP
-
PIA1_PLEOS
A:
[1-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
S
A
G
------
K
F
------
I
V
I
----
F
------
K
N
D
V
S
E
D
K
I
R
------
E
T
------
K
D
-----
E
V
---------
I
----
A
-----
E
G
G
T
I
T
N
E
Y
------
N
--
M
P
-------
G
M
K
G
F
A
G
E
L
T
P
Q
---
S
L
T
K
F
-
Q
G
L
Q
-
G
D
L
I
D
S
I
-
E
E
D
G
I
V
T
-
T
---------
Q
-------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.63
60%
125
- C6 -
1C3P
-
?
A:
[221-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
K
G
-
L
---------
N
D
N
E
F
L
F
A
L
E
K
S
L
E
I
V
K
E
V
F
E
P
E
V
Y
-------------------------------------------------------------------------
7
PsiBlast_PDB
40.20
60%
124
- C6 -
1C3R
-
?
A:
[221-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
K
G
-
L
---------
N
D
N
E
F
L
F
A
L
E
K
S
L
E
I
V
K
E
V
F
E
P
E
V
Y
-------------------------------------------------------------------------
5
PsiBlast_PDB
39.25
42%
113
- C6 -
3KSY
-
SOS1_HUMAN
A:
[343-370]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
L
A
P
V
Y
H
C
-
L
---------
H
Y
F
E
L
L
K
Q
L
E
E
K
S
E
D
Q
E
D
K
E
C
L
K
Q
A
-------------------------------------------------------------------------
8
PsiBlast_PDB
38.75
60%
137
- C6 -
1C3S
-
?
A:
[221-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
K
G
-
L
---------
N
D
N
E
F
L
F
A
L
E
K
S
L
E
I
V
K
E
V
F
E
P
E
V
Y
-------------------------------------------------------------------------
17
HHSearch
37.35
24%
172
- C6 -
2QFA
-
INCE_HUMAN
C:
[21-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
L
C
N
M
D
N
K
D
L
V
W
L
E
E
I
Q
E
E
A
E
-------------------------------------------------------------------------
3
PsiBlast_PDB
32.90
42%
116
- C6 -
1XD4
-
SOS1_HUMAN
A:
[343-370]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
L
A
P
V
Y
H
C
-
L
---------
H
Y
F
E
L
L
K
Q
L
E
E
K
S
E
D
Q
E
D
K
-------------------------------------------------------------------------------
4
PsiBlast_PDB
32.89
42%
116
- C6 -
1XDV
-
SOS1_HUMAN
A:
[343-370]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
L
A
P
V
Y
H
C
-
L
---------
H
Y
F
E
L
L
K
Q
L
E
E
K
S
E
D
Q
E
D
K
-------------------------------------------------------------------------------
2
PsiBlast_PDB
32.88
42%
116
- C6 -
1DBH
-
SOS1_HUMAN
A:
[343-370]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
L
A
P
V
Y
H
C
-
L
---------
H
Y
F
E
L
L
K
Q
L
E
E
K
S
E
D
Q
E
D
K
-------------------------------------------------------------------------------
21
Fugue
29.08
30%
149
* C6 *
1G2Y
-
HNF1A_MOUSE
A:
[1-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
---
S
K
L
S
Q
-
L
Q
T
E
M
L
A
A
L
L
E
-------
S
G
-
L
---------
S
K
E
A
L
I
Q
A
L
G
----------------------------------------------------------------------------------------
12
HHSearch
27.87
13%
71
* C4 *
3P8K
1
?
A:
[50-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
N
A
E
------
V
D
------
V
V
V
----
L
------
P
E
M
W
N
N
G
Y
D
L
------
E
H
------
L
N
-----
E
K
---------
A
----
D
-----
N
N
L
G
Q
S
F
S
F
------
I
--
K
H
-------
L
A
E
K
Y
K
V
D
I
V
A
G
---
S
V
S
N
I
-
R
N
N
Q
-
I
F
N
T
A
F
S
-
V
N
K
S
G
Q
L
-
I
---------
N
E
Y
D
K
V
H
L
V
P
M
L
R
E
H
E
F
L
T
A
G
E
Y
V
A
-------------------------------------------------------------------------