@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0003: (2016-03-11 )
MIILVQEVVVEGDINLGQFLKTEGIIESGGQAKWFLQDVEVLINGVRETRRGKKLEHQDRIDIPELPEDAGSFLIIHQGEQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------.........10--...-.------.....20-.-.......-30----........---.40.-.....-----..---50.......---.60...---....-------.-------70........80----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------
M
I
I
L
V
Q
E
V
V
V---EGD-I------
N
L
G
Q
F
L
K
-T-E
G
I
IESG-G-----Q
A
K
W
F
L
Q
D
---
V
E
V
L
-
I
N
G
V
R
-----
E
T
---RRGKKLEHQ---DRIDIP---ELPE-------D-------AG
S
F
L
I
I
HQGEQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
67
Fugue
67.33
25%
-59
- C3 -
1P9K
-
YBCJ_ECOLI
A:
[1-79]
---------------------------------------------------------------------------------------------------G
S
M
I
H
R
M
S
N
M
A
T
F
S
L
G
K
---
H
P
H
-
V
------
E
L
C
D
L
L
K
-
L
-
E
G
W
S
E
S
G
-
A
-----
Q
A
K
I
A
I
A
E
---
G
Q
V
K
-
V
D
G
A
V
-----
E
T
---
R
K
R
C
K
I
V
A
G
---
Q
T
V
S
F
A
-----------------------
G
H
S
V
Q
V
V
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
69
Fugue
64.67
28%
-31
- C3 -
1JH3
-
A:
[1-99]
----------------------------------------------------------------------------------------A
L
F
S
G
DIANLT
A
A
E
I
E
Q
G
F
K
D
V
P
S
F
V
H
E
---
G
G
D
-
V
------
P
L
V
E
L
L
V
-
S
-
A
G
I
S
P
S
K
-
R
-----
Q
A
R
E
D
I
Q
N
---
G
A
I
Y
-
V
N
G
E
R
-----
L
Q
---
D
V
G
A
I
L
T
A
E
---
H
R
L
E
-------------------------
G
R
F
T
V
I
R
R
G
K
K
KY
Y
L
I
R
Y
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
61.99
28%
-26
- C3 -
1JH3
-
A:
[30-91]
------------------------------------------------------------------------------------------------------------------------
G
D
-
V
------
P
L
V
E
L
L
V
-
S
-
A
G
I
S
P
S
K
-
R
-----
Q
A
R
E
D
I
Q
N
---
G
A
I
Y
-
V
N
G
E
R
-----
L
Q
---
D
V
G
A
I
L
T
A
E
---
H
R
L
E
-------------------------
G
R
F
T
V
I
R
R
G
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
HHSearch
61.65
21%
-28
- C3 -
3JAM
-
?
E:
[42-115]
---------------------------------------------------------------------------------------------------------------------------
L
------
P
L
I
V
F
L
R
N
R
-
L
K
Y
A
L
N
G
-
R
-----
E
V
K
A
I
L
M
Q
---
R
H
V
K
-
V
D
G
K
V
-----
R
T
---
D
T
T
F
P
A
G
F
M
---
D
V
I
T
L
E
---
A
T
N
E
-------
N
F
R
LVYDV
K
G
R
F
A
V
H
R
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
70
Fugue
61.30
21%
-120
* C4 *
4US3
13
?
A:
[10-450]
GREQWASRL
G
F
I
L
A
A
M
G
S
A
VGLGNI
W
R
F
S
Y
V
T
G
E
N
GG
A
A
F
L
L
V
Y
L
G
F
I
A
LI
G
I
P
I
V
L
A
E
F
T
I
G
R
R
A
QSD
A
V
G
S
F
E
K
L
APGKPWK
V
A
G
L
M
G
V
A
A
G
F
L
I
L
S
F
Y
G
V
I
A
G
W
I
L
F
Y
L
F
N
Y
I
---
T
G
Q
-
L
WSAPAE
G
F
G
G
F
F
----
E
G
F
I
A
N
P
-
T
L
P
L
F
W
Q
A
L
F
M
I
A
T
---
I
W
I
V
-
A
I
G
V
K
-----
K
G
--------
I
E
R
S
---
N
K
I
L
M
P
---
L
L
G
V
-------
L
-------
L
I
A
L
A
I
Y
S
L
T
L
G
G
A
K
E
G
L
A
F
L
FSPDWSALKD
P
G
V
Y
L
A
A
I
S
Q
A
F
F
T
L
SLGMG
A
L
I
T
Y
G
S
Y
VSKDSR
L
P
G
A
A
V
S
V
A
G
L
D
T
A
F
A
I
I
A
G
I
M
I
F
P
A
V
F
A
L
GLSPSGGPG
L
V
F
V
V
L
P
D
I
F
D
S
IRL
G
P
I
V
G
I
A
F
F
I
L
L
G
A
A
A
L
S
S
A
V
S
L
L
E
V
P
V
A
Y
F
M
R
K
F
DWS
R
K
Q
A
A
I
T
L
G
V
I
I
T
L
L
G
I
P
S
S
L
S
F
GVLGEVTIIPGLN
I
F
D
S
V
D
F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
F
I
G
WGWK
T
S
D
A
L
A
E
S
DLTDS
V
W
G
K
L
W
I
L
S
L
R
F
I
A
P
I
A
I
L
I
V
F
L
S
A
F
51
HHSearch
60.49
19%
-31
- C3 -
2VQE
-
RS4_THET8
D:
[95-153]
-----------------------------------------------------------------------------------------------------------------------
G
L
L
E
S
------
R
L
D
N
V
V
Y
-
R
-
L
G
F
A
V
S
R
-
R
-----
Q
A
R
Q
L
V
R
H
---
G
H
I
T
-
V
N
G
R
R
-----
V
D
---
L
P
S
Y
R
V
R
P
G
---
D
E
I
A
V
A
---
E
K
S
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
60.12
25%
-43
- C3 -
1P9K
-
YBCJ_ECOLI
A:
[8-76]
------------------------------------------------------------------------------------------------------------
S
N
M
A
T
F
S
L
G
--
K
H
P
H
V
------
E
L
C
D
L
L
K
-
L
-
E
G
W
S
E
S
G
-
A
-----
Q
A
K
I
A
I
A
E
---
G
Q
V
K
-
V
D
G
A
V
-----
E
T
---
R
K
R
C
K
I
V
A
G
---
Q
T
V
S
F
A
---
G
H
S
V
-------
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
59.23
16%
-34
- C3 -
1C05
-
RS4_GEOSE
A:
[47-104]
-----------------------------------------------------------------------------------------------------------------------
I
L
L
E
S
------
R
L
D
N
L
V
Y
-
R
-
L
G
L
A
R
T
R
-
R
-----
Q
A
R
Q
L
V
T
H
---
G
H
I
L
-
V
D
G
S
R
-----
V
N
---
I
P
S
Y
R
V
K
P
G
---
Q
T
I
A
V
R
---
E
K
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
PsiBlast_CBE
58.80
38%
2
- C3 -
1KYX
1
RIB4_SCHPO
D:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
MIE
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64
HHSearch
58.64
20%
-51
- C3 -
3J7A
-
?
F:
[42-114]
---------------------------------------------------------------------------------------------------------------------------
I
------
P
L
V
I
L
L
R
-
N
R
L
K
Y
A
L
T
F
-
D
-----
E
V
K
M
I
L
I
Q
---
K
I
V
K
-
V
D
N
K
V
-----
R
T
---
D
C
T
F
P
V
G
L
M
---
D
V
I
H
I
T
---
K
S
N
E
YFRLLYD
I
-------
K
G
R
F
V
P
H
R
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
58.50
38%
-10
- C3 -
1KZ6
-
RIB4_SCHPO
A:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
M
I
E
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSY
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
58.10
14%
-44
- C3 -
1DM9
1
HSLR_ECOLI
A:
[5-70]
-----------------------------------------------------------------------------------------------------------------------
P
A
V
E
V
------
R
L
D
K
W
L
W
-
A
-
A
R
F
Y
K
T
R
-
A
-----
L
A
R
E
M
I
E
G
---
G
K
V
H
-
Y
N
G
Q
R
-----
S
----
K
P
S
K
I
V
E
L
N
---
A
T
L
T
L
R
---
Q
G
N
D
-------
E
-------
R
-
T
V
I
V
K
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
68
Fugue
58.08
23%
-61
* C5 *
3QQZ
4
YJIK_ECOL6
A:
[9-251]
------------SFQNYHATIDGKEIAGIT
N
N
I
S
S
L
T
W
S
AQSN
T
L
F
S
T
I
NKP
A
A
I
V
E
M
T
TNGDLI
R
T
I
P
L
DFVKDLE
T
I
E
Y
IGDN
Q
F
V
I
S
DERDY
A
I
Y
V
I
S
L
T
PNS
E
V
K
I
L
K
K
I
K
I
PLQ
E
S
P
-
T
------
N
C
G
F
------
E
G
L
A
Y
S
R
Q
D
-----
H
T
F
W
F
F
K
E
K
NP
I
E
V
Y
K
V
N
G
L
L
SSN
E
L
H
I
---
S
K
D
K
A
L
Q
R
Q
FTL
D
D
V
S
G
A
---
E
F
N
Q
-------
Q
-------
K
N
T
L
L
V
L
S
H
E
S
R
A
L
Q
E
V
T
LVGEVI
G
E
M
S
LTKGSRGLSHNIK
Q
A
E
G
V
A
M
D
ASG
N
I
Y
I
V
S
E
P
N
R
F
Y
R
F
T
P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
PsiBlast_CBE
57.92
38%
-4
- C3 -
1KYV
1
RIB4_SCHPO
B:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
M
I
E
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
57.71
38%
-2
- C3 -
1KYV
1
RIB4_SCHPO
A:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
M
I
E
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
PsiBlast_CBE
57.49
38%
-3
- C3 -
1KYY
1
RIB4_SCHPO
C:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
M
I
E
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
PsiBlast_CBE
57.18
38%
0
- C3 -
1KYV
1
RIB4_SCHPO
D:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
MIE
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
PsiBlast_CBE
57.08
38%
1
- C3 -
1KYV
1
RIB4_SCHPO
E:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
MIE
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
56.76
38%
-4
- C3 -
1KZ9
-
RIB4_SCHPO
A:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
M
I
E
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
PsiBlast_CBE
56.69
38%
2
- C3 -
1KYX
1
RIB4_SCHPO
B:
[24-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
R
W
N
L
Q
A
---
I
E
P
L
-
V
K
G
A
V
-----
E
T
M
I
E
K
H
D
V
K
L
E
N
I
---
D
I
E
S
V
P
GSW
E
L
P
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------