@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0031: (2016-03-11 )
MSTFKPLPIFILSVLSSLPKARLSKNKIFIVFRFSSVTDKTTQNKKDTREVSRIFYSAIAPDC
Atome Classification :
(19 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..----.......10...-.....20.......-------.30---........40......---------------..50........60----...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS----TFK
P
L
P
I
F
I
L
S
V
-
L
S
SL
P
K
A
RLSKN
K
I
-------
F
I
V
---
F
R
FSSVTDKTTQN
K
K
D
---------------
T
R
E
V
S
R
I
F
Y
S
AIA-----PDC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
80.34
23%
-72
* C8 *
4WZR
1
K0020_HUMAN
A:
[9-524]
N
Y
D
I
V
V
R
A
K
Q
M
W
E
I
L
R
RKDCD
K
E
K
R
V
K
L
M
S
D
L
Q
K
L
I
QGK
I
K
T
I
A
F
AHDS
T
R
V
I
Q
C
Y
I
Q
Y
GN
E
E
Q
R
K
Q
A
F
E
E
L
RDD
L
V
E
L
S
KAKYS
R
N
I
V
K
K
F
L
M
YGS
K
P
Q
I
A
E
I
I
R
S
F
KGH
V
R
K
M
L
R
H
A
E
A
S
A
I
V
E
Y
A
Y
N
DKAI
L
E
Q
R
N
M
L
T
EELYG
N
T
F
Q
L
Y
KSADHPT
L
D
K
V
L
E
L
QPEK
L
E
L
I
M
D
E
M
K
Q
I
L
T
P
M
A
Q
K
E
AVIKH
S
L
V
H
K
V
F
L
D
F
F
T
Y
AP
P
K
L
R
S
E
M
I
E
A
I
R
EAVVYLAHT
H
D
G
A
R
V
A
M
H
C
L
W
H
GT
P
K
D
R
K
V
I
V
K
T
M
KTY
V
E
K
V
A
N
GQY
S
H
L
V
L
L
A
A
F
D
CIDD
T
K
L
V
K
Q
I
I
I
S
E
I
I
S
S
L
P
S
I
V
----
N
D
K
Y
G
R
K
V
L
L
Y
L
-
L
S
P
R
D
P
A
H
T
V
R
E
I
I
-------
E
V
L
---
Q
K
----
G
D
G
N
A
H
S
K
K
D
---------------
T
E
V
R
R
R
E
L
L
E
S
I
S
-----
P
A
L
L
S
Y
L
Q
E
H
A
Q
E
V
V
L
DKSA
C
V
L
V
S
D
I
L
G
SATGDV
Q
P
T
M
N
A
I
A
S
L
A
ATGLHPGGKDGELHIAEH
P
A
G
H
L
V
L
K
W
L
I
E
Q
D
K
K
M
K
E
N
GREGC
F
A
K
T
L
V
E
H
V
G
M
K
N
L
K
S
W
A
S
V
N
R
G
A
I
I
L
S
S
L
L
Q
SCD
L
E
V
A
N
K
V
K
A
A
L
KSLIPTLES
K
G
I
E
I
L
L
E
K
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
66.04
29%
-70
- C6 -
4RM4
1
YJIB_BACSU
A:
[138-182]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
V
I
V
I
S
E
-
L
L
G
V
P
S
A
H
M
E
Q
F
K
A
-------
W
S
D
---
L
L
V
S
T
P
K
D
K
S
E
E
A
E
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
63.67
18%
-22
- C3 -
2QO3
3
ERYA2_SACER
A:
[4-883]
-------------------------------------------------------------------------ESDPIAIV
S
M
A
C
R
L
P
GGVNT
P
Q
R
L
W
E
L
L
R
E
GGETLSGFPTDRGWDLARLHHPDPDNPGTSYVD
K
G
G
F
L
DDAAGFDAEFFGVS
P
R
E
A
A
A
MD
P
Q
Q
R
L
L
L
E
T
S
W
E
L
V
E
N
A
GIDPHSLRGTA
T
G
V
F
L
G
V
A
K
FGYGEDTADVEG
Y
S
V
T
G
V
A
P
A
V
A
S
G
R
I
S
Y
T
M
GLE
G
P
S
I
S
V
D
TACS
S
S
L
V
A
L
H
L
A
V
E
S
L
R
K
GESS
M
A
V
V
G
G
A
A
V
M
ATP
G
V
F
V
D
F
S
R
Q
RALAADGRSKAFGAG
A
D
----
G
F
G
F
S
E
G
V
T
L
V
L
-
L
E
R
L
S
E
A
R
R
N
G
H
E
V
-------
L
A
V
---
V
R
G
S
A
L
N
Q
D
G
A
S
N
G
L
S
---------------
A
P
--
S
G
P
A
Q
R
R
V
I
-----
R
Q
A
L
E
S
C
GLEPGDVDAVEAHGTGTALG
D
P
I
E
A
N
A
L
L
D
TYGRDRDADR
P
L
W
L
G
S
VKSNIGHTQAA
A
G
V
T
G
L
L
K
V
V
L
A
L
R
N
G
E
L
P
A
T
L
HVEEPTPHVDWSSGGVALLA
G
N
Q
P
W
R
R
G
ERT
R
R
A
A
V
S
A
F
G
ISG
T
N
A
H
V
I
V
E
E
A
PEHDG
R
P
V
P
L
V
V
S
A
RS
T
A
A
L
R
A
Q
A
A
Q
I
A
E
L
L
E
RPDAD
L
A
G
V
G
L
G
L
A
TTRARHE
H
R
A
A
V
V
A
ST
R
E
E
A
V
R
G
L
R
E
I
A
A
GAATADA
V
V
E
G
V
T
EVDGRN
V
V
F
L
F
P
G
Q
GSQWAGMG
A
E
L
L
S
S
S
P
V
F
A
G
K
I
R
A
C
D
E
S
M
A
PMQDWK
V
S
D
V
L
R
QAPGAPGLDR
V
D
V
V
Q
P
V
L
F
A
V
M
V
S
L
A
E
L
W
R
S
Y
GVEPA
A
V
V
G
H
SQG
E
I
A
A
A
H
V
A
GALT
L
E
D
A
A
K
L
V
V
G
R
S
R
L
M
R
S
L
SGE
G
G
M
A
A
V
ALG
E
A
A
V
R
E
R
L
RPWQDRLSVAAVNGPR
S
V
V
V
S
GE
P
G
A
L
R
A
F
S
E
D
C
A
A
E
G
I
R
V
R
D
I
DVD
Y
A
S
HSP
Q
I
E
R
V
R
E
E
L
L
E
T
T
GD
I
A
P
R
PARVTFHSTVESRSMDGTELD
A
R
Y
W
Y
R
N
L
R
ETVR
F
A
D
A
V
T
R
L
A
E
S
GYD
A
F
I
EVSPHPVV
V
Q
A
V
E
E
A
V
E
E
ADGAE
D
A
V
V
V
G
S
L
HRDGGD
L
S
A
F
L
R
S
M
A
T
A
H
V
S
GVDIRWDVALPG
A
A
P
F
ALPTYPFQ
R
K
R
Y
W
L
Q
21
Fugue
59.85
20%
-63
- C8 -
2AN7
-
PARD_ECOLX
A:
[1-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
R
L
T
I
D
M
T
D
Q
Q
H
Q
S
L
K
A
-
L
A
A
L
Q
G
K
T
I
K
Q
Y
A
L
-------
E
R
L
---
F
P
G
D
A
D
A
D
Q
A
W
Q
E
L
K
T
MLGNRINDGLAGKVS
T
K
S
V
G
E
I
L
D
E
E
L
S
-----
G
D
R
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
54.93
22%
-100
* C7 *
1M3Y
-
MCP_PBCV1
A:
[124-160]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
P
L
I
F
F
F
N
Q
T
P
G
L
A
L
P
L
I
A
L
Q
Y
H
E
V
-------
K
L
Y
---
F
T
L
A
S
Q
V
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
54.18
32%
-96
- C6 -
2L9B
-
RNA14_YEAST
B:
[630-650]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
P
T
E
V
L
D
L
-
L
S
V
I
P
K
R
Q
Y
F
N
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
53.91
32%
-38
- C6 -
2WZO
-
A:
[123-144]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
H
N
L
-
I
Q
S
C
P
G
A
R
K
C
I
N
Y
Q
-------
W
V
K
---
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
51.15
18%
-30
- C4 -
2JX5
-
?
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
----
V
I
V
R
L
Q
D
Q
T
L
P
F
-
E
L
P
-
A
G
A
R
A
S
Q
L
S
N
-------
L
L
S
S
SG
M
A
F
S
L
H
T
Q
G
R
V
L
S
E
A
A
---------------
E
L
N
-
D
K
M
V
I
D
A
F
V
-----
P
A
D
GAGLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
49.72
16%
-56
- C6 -
2R1F
3
YCEG_ECOLI
A:
[136-167]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
L
---
V
T
M
A
S
I
I
E
K
E
T
A
V
A
S
E
---------------
R
D
Q
V
A
S
V
F
I
N
R
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
47.79
11%
-54
- C5 -
1IMO
-
A:
[835-922]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSADETLCQTKVL
L
D
----
I
F
T
G
V
R
L
Y
L
P
P
S
-
T
P
D
F
S
R
L
R
R
Y
F
V
A
F
D
G
D
L
V
Q
E
F
D
M
---
T
S
A
T
H
V
L
G
S
R
D
K
N
P
A
A
---------------
Q
Q
V
S
P
E
W
I
W
A
C
I
R
K
RRLV
A
P
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
38.17
12%
8
- C6 -
2K6I
-
Y223_METJA
A:
[1-47]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
----
V
---------
S
V
-
M
E
A
I
K
E
V
K
L
A
E
E
Q
A
-------
V
K
E
---
I
E
E
A
K
N
R
A
E
Q
I
K
A
E
A
I
---------------
E
E
A
K
K
L
I
------------
A
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
36.58
21%
45
* C6 *
1PEH
2
?
?:
[1-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
K
K
--------------
Y
H
L
Q
E
R
V
D
K
V
K
K
K
V
K
D
---------------
V
E
E
K
S
K
E
W
V
Q
K
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
36.19
42%
-112
- C6 -
2LIF
-
POLG_HCVJF
A:
[174-185]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
I
F
L
L
A
L
-
L
S
C
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
34.25
17%
-0
- C6 -
2E74
3
PETN_MASLA
H:
[1-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
D
V
L
G
W
V
A
L
-------
L
V
V
---
F
T
W
S
I
A
M
V
V
W
G
R
N
G
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
32.58
45%
-72
- C2 -
3WU2
-
PSBL_THEVL
L:
[22-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
L
V
L
A
L
-
L
F
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
30.72
100%
87
- C1 -
1CBG
-
A:
[1-6]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
P
L
P
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
26.19
21%
-15
- C6 -
3ENC
-
?
A:
[17-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
V
A
K
V
V
Y
E
A
V
L
-----
Y
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
22.55
13%
-8
- C7 -
2I2Q
1
COFI_SCHPO
A:
[60-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
C
R
-------
Y
A
I
---
Y
D
F
E
F
N
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
16.27
13%
6
- C7 -
2KVK
-
?
A:
[60-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
P
C
-------
Y
V
A
---
F
D
F
E
Y
N
D
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------