@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0044: (2016-03-11 )
MEQYKEVHINSLNKEELEKLAKMGQLIDVRTKEEYELGHINGSTLHPVEEIKSFNKNSNKTYYIHCKSGNRSTKACDYLAKQGYDVVNLKGGYKDYEAKNFNSAPLIEKDIEIKENRKQFDFRGLQCPGPIVNISKEINNISTGEQIEVTVTDPGFNSDIKSWAKQTGNTLVNLTEEANVINAIIQKEKPKEFEINDTATGTTIVLFSGELDKAVAAMIIANGAKAAGKDVTIFFTFWGLNALKKAQSTRVKKKGISKMFDLMLPKDPIHMPLSKMNMFGLGNIMMRYVMNKKNVDSLYSLIDQAIDQDIKLIACTMSMDVMGISKEELRDEVDYGGVGTYIGHTEQANHNLFI
Atome Classification :
(20 SA)
.........10.....-...20.---..---.....30........40......-.---.50--------.----.--.--------------------------------..--.-------.--.--60......-..70........80....-..-..90.-.-......100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......--210.......220.......230........240.......250.......260.......270.......280.......290.......300......-----.-310.......320......-----------.330.-.-.....340.......350..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MEQ
Y
K
E
V
HINSL
N
K
E
E
-
L
E
K
L
A
K---M
G
---
Q
L
I
D
V
RTKEEYELGHINGSTLH
P
-
V
---
E
E
I
--------
K
----
S
--F--------------------------------NK--N-------S--
N
--
K
T
Y
Y
I
H
CK-SGNRS
T
K
A
C
D
Y
L
A
KQG
Y
D
-
V
V
-
N
LKGG-Y-KDYEAKNFNSAPLIEKDIEIKENRKQFDFRGLQCPGP
I
V
N
I
S
K
E
INNISTG
E
Q
I
E
V
T
V
TDPGF
N
S
D
I
K
S
W
A
K
QTG
N
T
L
V
N
LT
E
E
A
N
V
I
N
A
I
I
QKEKPK
E
F
EINDTAT
G
T
T
I
V
L
FSG--E
L
D
K
A
V
A
A
M
I
IANGAKAAGK
D
V
-
T
I
F
F
T
F
W
G
L
N
A
L
K
K
A
Q
S
T
R
V
K
K
K
G
I
S
K
M
F
D
L
MLPKDPIHM
P
L
S
K
M
N
M
F
G
L
G
N
I
M
M
R
Y
V
MNKK
N
V
D
S
L
Y
S
L
I
D
Q
A
I
DQ-----D-
I
K
L
I
A
C
T
M
S
M
D
VMGI
S
K
E
E
-----------
L
RDEV-D-YGGVGTYIGHTEQANHNLFI
23
HHSearch
82.16
35%
-108
- C1 -
2QS7
3
?
A:
[7-144]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
K
L
S
I
I
V
F
S
G
--
T
I
D
K
L
M
P
V
G
I
L
T
S
G
A
A
A
S
G
Y
E
V
-
N
L
F
F
T
F
W
G
L
Q
A
I
T
K
R
S
L
N
S
Q
Q
------------------
P
P
Q
I
D
K
N
Y
E
Q
M
G
P
I
M
M
Q
K
-
M
Q
E
M
K
Y
P
M
W
H
Q
L
V
Q
Q
A
K
E
I
-----
G
E
V
K
V
F
A
C
S
T
T
M
E
F
F
G
I
K
R
E
D
-----------
L
A
E
F
V
-
D
D
V
V
G
V
A
T
F
L
D
R
A
E
G
G
-
T
T
L
F
I
1
PsiBlast_PDB
75.25
27%
-109
- C1 -
2QS7
3
?
A:
[11-144]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
I
V
F
S
G
--
T
I
D
K
L
M
P
V
G
I
L
T
S
G
A
A
A
S
G
Y
E
V
-
N
L
F
F
T
F
W
G
L
Q
A
I
T
K
R
S
L
N
S
Q
Q
P
P
Q
I
D
K
N
Y
E
Q
M
G
P
-----------------------
I
M
M
Q
K
M
Q
E
M
K
Y
P
M
W
H
Q
L
V
Q
Q
A
K
E
I
G
E
-
V
K
V
F
A
C
S
T
T
M
E
F
F
G
I
K
R
E
D
-----------
L
A
E
F
V
D
D
-
V
V
G
V
A
T
F
L
D
R
A
E
-
G
G
T
T
L
F
I
33
HHSearch
71.74
33%
-44
- C1 -
3FOJ
1
?
A:
[2-99]
---------
E
S
I
T
V
T
E
-
L
K
E
K
I
L
DA
N
P
V
---
N
I
V
D
V
R
T
D
Q
E
T
A
M
G
I
I
P
G
A
E
T
I
P
-
M
---
N
S
I
P-------
D
N---
L
--
N
--------------------------------
Y
F
--
N
-------
D
--
N
--
E
T
Y
Y
I
I
C
K
-
A
G
G
R
S
A
Q
V
V
Q
Y
L
E
Q
N
G
V
N
-
A
V
-
N
V
E
G
G
-
M
-
D
E
F
G
D
E
G
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
71.68
41%
-43
- C1 -
3IWH
1
?
A:
[2-89]
----
K
S
I
T
T
D
E
L
K
N
K
L
-
L
E
--
S
K
---
P
V
---
Q
I
V
D
V
R
T
D
E
E
T
A
M
G
Y
I
P
N
A
K
L
I
P
-
M
---
D
T
I
--------
P
DNLN
S
--
F
--------------------------------
N
K
--
N
-------------
E
I
Y
Y
I
V
C
A
-
G
G
V
R
S
A
K
V
V
E
Y
L
E
A
N
G
I
D
-
A
V
-
N
V
E
G
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
69.88
34%
-35
- C1 -
3IWH
1
?
A:
[2-102]
---------
K
S
I
T
T
D
E
-
L
K
N
K
L
L
ES
K
P
V
---
Q
I
V
D
V
R
T
D
E
E
T
A
M
G
Y
I
P
N
A
K
L
I
P
-
M
---
D
T
I
P-------
D
N---
L
--
N
--------------------------------
S
F
--
N
-------
K
--
N
--
E
I
Y
Y
I
V
C
A
-
G
G
V
R
S
A
K
V
V
E
Y
L
E
A
N
G
I
D
-
A
V
-
N
V
E
G
G
-
M
-
H
A
W
G
D
E
G
L
E
I
K
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
67.30
32%
-44
- C1 -
3ICR
1
?
A:
[488-578]
--------
V
D
T
V
Q
W
H
E
-
I
D
R
I
V
E
N
--
G
G
---
Y
L
I
D
V
R
E
P
N
E
L
K
Q
G
M
I
K
G
S
I
N
I
P
-
L
---
D
E
L
--------
R
----
D
--
R
--------------------------------
L
E
--
E
-------
V
PV
D
--
K
D
I
Y
I
T
C
Q
-
L
G
M
R
G
Y
V
A
A
R
M
L
M
E
K
G
Y
K
-
V
K
-
N
V
D
G
G
-
F
-
K
L
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
66.24
28%
-38
- C1 -
3D1P
2
RDL1_YEAST
A:
[20-139]
------
S
N
I
Q
S
Y
S
F
E
D
M
K
R
I
V
G
K
---
H
D
PN
V
V
L
V
D
V
R
E
P
S
E
Y
S
I
V
H
I
P
A
S
I
N
V
P
-
Y
---
R
S
H
PDAFALD
P
L
----
E
--
F
--------------------------------
E
K
--
Q
IGIPKPD
S
--
A
--
K
E
L
I
F
Y
C
A
-
S
G
K
R
G
G
E
A
Q
K
V
A
S
S
H
G
Y
S
-
N
T
-
S
L
Y
P
G
-
S
M
N
D
W
V
S
H
G
G
D
K
L
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
65.83
32%
-45
- C1 -
3ICS
1
?
A:
[488-578]
--------
V
D
T
V
Q
W
H
E
-
I
D
R
I
V
E
N
--
G
G
---
Y
L
I
D
V
R
E
P
N
E
L
K
Q
G
M
I
K
G
S
I
N
I
P
-
L
---
D
E
L
--------
R
----
D
--
R
--------------------------------
L
E
--
E
-------
V
PV
D
--
K
D
I
Y
I
T
C
Q
-
L
G
M
R
G
Y
V
A
A
R
M
L
M
E
K
G
Y
K
-
V
K
-
N
V
D
G
G
-
F
-
K
L
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
65.56
32%
-50
- C1 -
3ICT
1
?
A:
[488-578]
--------
V
D
T
V
Q
W
H
E
-
I
D
R
I
V
E
N
--
G
G
---
Y
L
I
D
V
R
E
P
N
E
L
K
Q
G
M
I
K
G
S
I
N
I
P
-
L
---
D
E
L
--------
R
----
D
--
R
--------------------------------
L
E
--
E
-------
V
PV
D
--
K
D
I
Y
I
T
C
Q
-
L
G
M
R
G
Y
V
A
A
R
M
L
M
E
K
G
Y
K
-
V
K
-
N
V
D
G
G
-
F
-
K
L
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
65.14
16%
-111
- C1 -
2HY5
-
DSRE_ALLVD
A:
[1-128]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
F
A
L
Q
I
N
E
G
PY
Q
H
Q
A
S
D
S
A
Y
Q
F
A
K
A
A
L
E
K
G
H
E
I
F
R
V
F
F
Y
H
D
G
V
N
N
S
T
R
L
T
T
P
P
Q
------------------------------------------
D
D
R
H
I
V
N
R
W
A
E
L
A
E
Q
Y
----
E
-
L
D
M
V
V
C
V
A
A
A
Q
R
R
G
I
V
D
E
G
E
A
S
R
N
GKD
A
T
N
I
H
P
K
F
-
R
-
I
S
G
L
G
Q
L
V
E
A
A
I
Q
A
D
R
L
V
V
F
12
PsiBlast_PDB
63.70
30%
-51
- C1 -
3GK5
-
?
A:
[103-190]
----------
S
I
N
A
A
D
-
L
Y
E
N
I
K
---
A
Y
---
T
V
L
D
V
R
E
P
F
E
L
I
F
G
S
I
A
N
S
I
N
I
P
-
I
---
S
E
L
--------
R
----
E
--
K
--------------------------------
W
K
IL
E
-------
R
--
D
--
K
K
Y
A
V
I
C
A
-
H
G
N
R
S
A
A
A
V
E
F
L
S
Q
L
G
L
N
-
I
V
-
D
V
E
G
G
-
I
-
Q
S
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
61.72
26%
-24
- C1 -
1GN0
1
GLPE_ECOLI
A:
[1-97]
M
D
Q
F
E
C
I
N
V
A
D
A
H
Q
K
L
-
Q
E
K
E
A
---------
V
L
V
D
I
R
D
P
Q
S
F
A
M
G
H
A
V
Q
A
F
H
L
T
-
N
---
D
T
L
--------
G
----
A
--
F
--------------------------------
M
R
--
D
-------
N
--
D
FD
T
P
V
M
V
M
C
Y
-
H
G
N
S
S
K
G
A
A
Q
Y
L
L
Q
Q
G
Y
D
-
V
V
Y
S
I
D
G
G
-
F
-
E
A
W
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
61.68
33%
-8
- C1 -
3FOJ
1
?
A:
[2-100]
---------
E
S
I
T
V
T
E
-
L
K
E
K
I
L
---
D
A
N
P
V
N
I
V
D
V
R
T
D
Q
E
T
A
M
G
I
I
P
G
A
E
T
I
P
M
N
---
S
I
P
--------
D
----
N
--
L
--------------------------------
N
Y
F-
N
-------
D
--
N
--
E
T
Y
Y
I
I
C
K
-
A
G
G
R
S
A
Q
V
V
Q
Y
L
E
Q
N
G
V
N
-
A
V
-
N
V
E
G
G
M
D
-
E
F
G
D
E
G
L
E
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
60.72
25%
-14
- C1 -
2KL3
-
?
A:
[1-109]
M
E
P
Q
S
D
A
H
V
L
---
K
S
R
-
L
E
W
G
E
P
---
A
F
---
T
I
L
D
V
R
D
R
S
T
Y
N
D
G
H
I
M
G
A
M
A
M
P
-
I
---
E
D
L
V
D
R
-----
A
----
S
--
S
--------------------------------
S
L
--
E
-------
K
--
S
--
R
D
I
Y
V
Y
G
A
-
G
D
E
Q
T
S
Q
A
V
N
L
L
R
S
A
G
F
E
H
V
S
-
E
L
K
G
G
-
L
-
A
A
W
K
A
I
G
G
P
T
E
G
I
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
60.41
30%
-43
- C1 -
3NTA
2
?
A:
[478-562]
--------------
D
Q
-
I
D
N
L
S
E
---
D
Q
---
L
L
L
D
V
R
N
P
G
E
L
Q
N
G
G
L
E
G
A
V
N
I
P
-
V
---
D
E
L
--------
R
----
D
--
R
--------------------------------
M
H
--
E
LP-----
K
--
D
--
K
E
I
I
I
F
C
Q
-
V
G
L
R
G
N
V
A
Y
R
Q
L
V
N
N
G
Y
R
-
A
R
-
N
L
I
G
G
-
Y
-
R
T
Y
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
60.15
30%
-19
- C1 -
3G5J
3
?
A:
[5-133]
------------
S
V
I
K
-
I
E
K
A
L
K
LD-
K
V
---
I
F
V
D
V
R
T
E
G
E
Y
E
E
D
H
I
L
N
A
I
N
M
P
-
L
---
F
K
N
N
-------
E
H
---
N
E
V
G
T
I
Y
K
M
QG
K
H
E
A
I
Q
K
G
F
D
Y
VSYK
L
K
D
I
Y
L
Q
A
A
E
L
A
--
L
-------
N
--
Y
--
D
N
I
V
I
Y
C
A
R
G
G
M
R
S
G
S
I
V
N
L
L
S
S
L
G
V
N
-
V
Y
-
Q
L
E
G
G
-
Y
-
K
A
Y
R
N
F
V
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.08
39%
-59
- C1 -
3FOJ
1
?
A:
[21-93]
--------------------------------
I
V
D
V
R
T
D
Q
E
T
A
M
G
I
I
P
G
A
E
T
I
P
-
M
---
N
S
I
--------
P
D---
N
--
L
--------------------------------
N
Y
F-
N
-------
D
--
N
--
E
T
Y
Y
I
I
C
K
-
A
G
G
R
S
A
Q
V
V
Q
Y
L
E
Q
N
G
V
N
-
A
V
-
N
V
E
G
G
-
M
-
D
E
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
58.00
27%
-39
* C1 *
3GK5
-
?
A:
[101-199]
--------
Y
R
S
I
N
A
A
D
-
L
Y
E
N
I
K
---
A
Y
---
T
V
L
D
V
R
E
P
F
E
L
I
F
G
S
I
A
N
S
I
N
I
P
-
I
---
S
E
L
R-------
E
K---
W
--
K
--------------------------------
I
L
--
E
-------
R
--
D
--
K
K
Y
A
V
I
C
A
-
H
G
N
R
S
A
A
A
V
E
F
L
S
Q
L
G
L
N
-
I
V
-
D
V
E
G
G
-
I
-
Q
S
W
I
E
E
G
Y
P
V
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
57.32
30%
-33
- C1 -
4OCG
1
?
A:
[478-562]
--------------
D
Q
-
I
D
N
L
S
E
---
D
Q
---
L
L
L
D
V
R
N
P
G
E
L
Q
N
G
G
L
E
G
A
V
N
I
P
-
V
---
D
E
L
--------
R
----
D
RM
H
--------------------------------
E
L
--
P
-------
K
--
D
--
K
E
I
I
I
F
C
Q
-
V
G
L
R
G
N
V
A
Y
R
Q
L
V
N
N
G
Y
R
-
A
R
-
N
L
I
G
G
-
Y
-
R
T
Y
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
57.06
31%
-59
- C1 -
2K0Z
-
?
A:
[19-98]
--------------------------------
V
V
D
V
R
E
L
D
E
Y
E
E
L
H
L
P
N
A
T
L
I
S
-
V
ND
Q
E
K
L
--------
A
----
D
--
F
L
-------------------------------
S
Q
--
H
-------
K
--
D
--
K
K
V
L
L
H
C
R
-
A
G
R
R
A
L
D
A
A
K
S
M
H
E
L
G
Y
T
-
P
Y
-
Y
L
E
G
N
-
V
-
Y
D
F
E
K
Y
G
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------