@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0054: (2016-03-11 )
MIIYMNTIKNTIYTEAIFSKDEKHRYLLKKTWDEKKPACTVITMYPHLDGVLSLDLTTVLILNQLANSERYGAVYLVNLFSNIKTPENLKHIKEPYDKHTDIHLMKAISESDTVILAYGAYAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNEIMHPLNPKARQKWTLKA
Atome Classification :
(20 SA)
-------------------------------------------------------------.........10......-..20---....-...------..30-------.........40-----.......-.50..----....-.----..60----........----------------.70----------------.--------------.......-80---------.-------...-.----.---..-90.......--.100.....------..-.-110.-......------.120-----...--..-...130..---......140.......150..-.....160.......170.-------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------
M
I
I
Y
M
NTIKN
T
I
Y
T
E
A
I-FSK----
D
E
K
H
-
R
Y
L
------
L
K
K
--------TWDEKKP
A
C
T
V
-----
I
T
MYPHL-D
G
-
V
L
----
S
L
D
L
-
T
----
T
V
L
-----
I
L
N
Q
LANS----------------ERY----------------
G
--------------
A
V
Y
L
V
N
L
-
F
S---------N-------IKT-
P
----
E
---
N
L
-
K
H
I
K
E
P
Y
DK--HT
D
-
I
H
L
M
K
------AI-S-E-SD-
T
V
I
L
AY------GAY------AKR--
P
V
-
V
V
E
R
V
-
E
Q
---
V
M
E
M
L
K
P
H
K
K
K
V
K
K
L
INP
A
T
N
-EIMHPLN
P
K
A
R
Q
K
WTL-KA-------------------
29
Fugue
74.03
18%
-100
* C7 *
4G3A
-
CLASP_DROME
A:
[5-231]
-----------------------------------KPSD
L
D
G
F
I
Q
Q
MPKADMRV
K
V
Q
L
A
E
D
L
V
T
F
L
S
D
D
T
N
S
I
V
C
T
-------------
D
M
G
F
L
------
I
D
G
L
M
PWL---
T
G
S
H
F
K
I
A
Q
K
S
-----
L
E
A
F
S
E
L
-
I
K
-
R
L
----
G
S
D
F
-
N
AYTA
T
V
L
P
H
---
V
I
D
R
L
G
D
S
R
D
T
V
------------
R
E
K
----------------
A
--------------
Q
L
L
L
R
D
L
M
E
H
---------
R
-------
V
L
P
-
P
----
Q
---
A
L
I
D
K
L
A
T
S
C
F
K
--
H
K
N
-
A
K
V
R
E
------
E
F
-
L
-
Q
----
T
I
V
N
A
L
------
H
E
Y
------
G
T
Q
--
Q
L
S
V
R
V
Y
I
-
P
P
---
V
C
A
L
L
G
D
P
T
V
N
V
R
E
A
A
I
Q
T
L
V
-
E
I
Y
K
H
V
G
D
R
L
R
P
D
L
R
R
M
D
D
VP
A
S
K
L
A
M
L
E
Q
K
F
D
Q
V
K
L
E
28
Fugue
73.33
17%
-54
* C9 *
1OE4
7
SMUG1_XENLA
A:
[2-246]
------ESP
A
D
S
F
L
K
V
E
L
E
L
N
L
K
L
S
N
LVFQDPVQ
Y
V
Y
N
PLVYA
W
A
P
H
E
N
Y
V
Q
T
YCKSKKE
V
L
F
L
G
M
N
P
G
P
F
G
M
A
Q
T
G
V
P
F
G
E
----
V
N
H
V
-
R
D
W
------
L
Q
I
--------
E
G
P
V
S
K
P
E
V
E
H
PKRR-
I
R
G
F
E
C
P
-
Q
S
-
E
V
----
S
G
A
R
-
F
----
W
S
L
-----
F
K
S
L
C
G
Q
P
----------------
E
T
F
----------------
F
--------------
K
H
C
F
V
H
N
-
H
C
P
L
I
F
M
N
HSG
K
-------
N
L
T
-
P
----
T
---
D
L
P
K
A
Q
R
D
T
L
L
E
--
I
C
D
-
E
A
L
C
Q
------
A
V
-
R
-
V
-
L
G
V
K
L
V
I
G
V
------
G
R
F
------
S
E
Q
--
R
A
-
R
K
A
L
M
-
A
E
---
G
I
D
V
------
T
V
K
G
I
M
H
P
S
-------
P
R
N
P
Q
A
N
K
G
W
E
G
-
I
V
R
G
Q
L
L
E
L
GVLSLLT-----
19
HHSearch
68.67
16%
-95
- C9 -
1UI0
4
?
A:
[32-126]
-------------------------------------------------------------------------------------------------------------------
P
D
A
K
L
M
I
-----
V
G
E
G
P
G
E
-
E
E
-
D
K
T
GRP
F
V
G
K
-
A
----
G
Q
L
-----
L
-
N
R
I
L
E
A
----------------
A
G
I
PR--------------
E
--------------
E
V
Y
I
T
N
I
-
V
K
---------
C
-------
R
P
P
-
Q
N---
R
---
A
P
-
L
--
P
D
E
A
-
K
--
I
C
T
D
K
W
L
L
K
------
Q
I
-
E
L
I
-
A
P
-
Q
I
I
V
P
L
------
G
A
V
------
A
A
E
----------------------------------------------------------------------------
2
PsiBlast_PDB
68.55
22%
-50
- C9 -
4Q3L
-
?
A:
[32-138]
---------------------------------------------------------------------------------------------------------------------------------
I
Y
Y
E
I
-
D
G
-
T
L
----
D
I
N
S
-
D
----
V
I
V
-----
I
L
N
G
I
M
M
S
----------------
T
K
S
----------------
W
--------------
D
A
F
V
E
N
F
-
S
K
---------
N
HV
L
L
R
Y
D
M
F
D
-
Q
----
G
---
Q
S
-
S
K
I
E
E
S
Y
T
Q
--
T
I
Q
-
V
E
L
L
K
N
L
L
E
H
L
G
I
-
A
-
Q
-
A
N
-
I
V
G
I
S
Y
------
G
A
S
I
A
L
Q
F
A
A
K
Y
--
P
T
-
M
I
K
R
M
------------------------------------------------------------------
23
Fugue
67.60
21%
1
- C2 -
2JOZ
-
YXEF_BACSU
A:
[1-135]
-------------------------------------------------------------
M
I
M
V
---------
S
G
C
Q
-
Q
Q
K
----
E
E
T
P
-
F
Y
Y
--------
G
--------
T
W
D
E
G
R
A
P
------------
G
P
T
-
D
G
-
V
K
----
S
A
T
V
-
T
----
F
T
E
-------
D
E
V
V
E
T
----------------
E
V
M
-------------------------------------------------------------------
E
---
G
R
-
G
E
V
Q
L
P
F
M
A
--
Y
K
V
-
I
S
Q
-----------
S
-
T
-
D
G
-
S
I
E
I
Q
Y
L
-----
G
P
Y
------
Y
P
L
--
K
S
-
T
L
K
R
G
-
E
N
G
--
T
L
I
W
E
Q
N
G
Q
R
K
T
M
T
R
I
E
S
K
T
G
-
R
E
E
K
D
E
K
S
K
S
L
E
H
H
H
H
-
H
H
-------------------
17
HHSearch
62.42
16%
-79
- C9 -
1VK2
2
?
A:
[49-142]
-------------------------------------------------------------------------------------------------------------------
L
D
T
R
I
V
F
-----
V
G
E
G
P
G
E
-
E
E
-
D
K
T
GRP
F
V
G
R
-
A
----
G
M
L
-----
L
-
T
E
L
L
R
E
----------------
S
G
I
----------------
R
RE------------
D
V
Y
I
C
N
V
-
V
K
---------
C
-------
R
P
P
-
N
----
N
---
R
T
-
P
T
--
P
E
E
Q
A
--
A
C
G
-
H
F
L
L
A
------
Q
I
-
E
I
I
-
N
P
-
D
V
I
V
A
L
------
G
A
T
------
A
L
S
----------------------------------------------------------------------------
10
PsiBlast_PDB
61.78
28%
-67
- C6 -
3A6H
2
CRNA_PSEPU
A:
[83-166]
------------------------------------------------------------------------------------------------------------------------------------
H
F
-
P
G
-
T
T
----
S
L
D
G
-
A
----
T
L
T
G
T
V
Q
D
I
I
R
E
L
A
-------------------
R
H
----------------
G
--------------
A
R
R
L
V
L
M
-
N
G
---------
H
-------
Y
--------
E
---
N
S
-
M
F
I
V
E
G
I
D
L
--
A
L
R
-
E
L
R
Y
A
------
G
I
-
Q
-
D
-
F
K
-
V
V
V
L
S
Y
------
A
D
F
------
V
K
D
--
P
A
-
V
I
Q
Q
L
------------------------------------------------------------------
25
Fugue
60.56
15%
-20
- C3 -
1DDT
1
?
?:
[1-199]
---------------------------------------------------------GADD
V
V
D
S
S
K
S
F
V
M
E
N
F
S
S
Y
H
-
G
T
K
PGY
V
D
S
I
Q
-
K
G
I
------
Q
K
P
--------
K
S
G
T
Q
G
N
Y
D
D
D
-----
W
K
G
F
Y
S
T
-
D
N
-------
K
Y
D
A
-
A
----
G
Y
S
-----
V
D
N
E
N
P
L
S
----------------
G
K
A
----------------
G
--------------
G
V
V
K
V
T
Y
-
P
G
---------
L
-------
T
K
V
-
L
A
L
KV
D
---
N
A
-
E
T
I
K
K
E
L
G
L
--
S
L
T
-
E
P
L
M
E
------
Q
V
-
G
---
T
E
-
E
F
I
K
R
F
------
G
D
G
------
A
S
R
--
V
V
-
L
S
L
P
F
-
A
E
GSS
S
V
E
Y
I
N
N
W
E
Q
A
K
A
L
S
V
E
L
E
I
N
F
E
T
R
G
K
R
G
Q
D
A
M
Y
E
Y
M
A
-
Q
A
CA-----------------
30
Fugue
60.27
13%
-41
- C5 -
4MVD
1
PCY1A_RAT
A:
[60-315]
-----GLRQPAPFSDE
I
E
V
D
FSK
P
Y
V
R
V
T
M
E
E
A
C
R
GTPCER
P
V
R
V
Y
A
D
GIFDLFH
S
G
H
A
R
A
L
M
Q
A
K
N
L
F
P
N
T
Y
L
I
V
G
V
-
C
S
D
----
E
L
T
H
-
N
F
K
G
F
T
VMN
E
N
E
--------
R
Y
D
A
V
Q
H
C
R
Y
V
-----
D
E
V
V
R
N
A
-
P
W
-
T
L
----
T
P
E
F
-
L
----
A
E
H
-----
R
I
D
F
V
A
H
D
DI
P
Y
S
S
AGSDDVY
K
H
I
K
E
A
----------------
G
--------------
M
F
A
P
T
Q
R
-
T
E
---------
G
-------
I
S
T
-
S
----
D
---
I
I
-
T
R
I
V
R
D
Y
D
V
--
Y
A
R
-
R
N
L
Q
R
------
T
A
-
K
-
E
-
L
N
-
V
S
F
I
N
E
------
K
K
Y
------
H
L
Q
--
E
R
-
V
D
K
V
K
-
K
K
---
V
K
D
V
E
E
K
S
K
E
F
V
Q
K
V
E
E
K
S
I
D
-
L
I
W
E
E
K
S
R
E
F
I
G
S
F
L
E
-
M
F
GP-----------------
31
Fugue
58.66
9%
-25
- C7 -
4R30
5
EPM2A_HUMAN
A:
[6-184]
-------------------------------------------------------------
Q
A
M
H
Y
S
R
I
L
P
N
I
W
L
G
S
C
-
P
R
Q
----
V
E
H
V
-
T
I
K
------
L
K
H
ELGIT
A
V
M
N
F
Q
T
E
W
D
I
V
Q
N
-----
S
S
G
C
N
R
Y
-
P
E
-
P
M
----
T
P
D
T
-
M
----
I
K
L
-----
Y
R
E
E
G
L
A
Y
----------------
I
W
M
----------------
P
--------------
T
P
D
M
S
T
E
-
G
R
---------
V
-------
Q
M
L
-
P
----
Q
---
A
V
-
C
L
L
H
A
L
L
E
K
GH
I
V
Y
-
V
H
S
N
A
------
G
V
-
G
-
R
-
S
T
-
A
A
V
C
G
W
------
L
Q
Y
------
V
M
G
--
W
N
--
L
R
K
V
-
Q
Y
---
F
L
M
A
K
R
P
A
V
Y
I
D
E
E
A
L
A
R
A
Q
E
-
D
F
F
Q
K
F
G
K
V
R
S
S
V
C
S
L
----------------------
26
Fugue
57.36
15%
-37
- C8 -
2E6Q
-
A:
[1-112]
------------------------------------------------------------------------------------------------------
G
--------
S
S
G
S
S
G
T
A
R
L
V
A
G
L
E
D
V
Q
V
Y
D
G
E
-
D
A
-
V
F
----
S
L
D
L
-
S
----
T
I
I
-----
Q
G
T
W
F
L
N
G
----------------
E
E
L
----------------
K
--------------
S
----
N
E
-
P
E
---------
G
-------
Q
V
E
-
P
----
G
---
A
L
-
R
Y
R
I
E
Q
K
G
L
--
Q
H
R
-
L
I
L
H
A
------
V
K
-
H
-
Q
-
D
S
-
G
A
L
V
G
F
------
S
C
P
------
G
V
Q
--
D
S
-
A
A
L
T
I
-
Q
E
---
S
S
G
P
S
S
G
-----------------------------------------------------
22
Fugue
57.31
10%
-42
- C4 -
4R0G
-
?
A:
[1-258]
MLSS
T
K
E
Y
L
Q
A
L
R
D
GKY
L
L
F
L
Q
W
P
K
F
I
A
E
Y
Y
GQE
A
D
E
M
V
S
L
L
I
F
E
W
L
N
N
GFC
L
D
D
I
K
K
F
A
I
L
Y
A
V
H
E
M
E
S
R
P
L
R
E
G
L
S
-
Y
A
L
----
T
T
I
S
-
I
A
L
------
F
P
C
--------
M
V
Y
L
T
N
N
L
Q
E
H
-----
Y
I
T
S
K
K
L
-
S
S
-
K
E
----
V
L
Q
L
-
M
----
T
M
N
-----
N
A
Y
L
E
K
Q
R
----------------
F
V
E
----------------
F
--------------
L
G
Q
E
Q
D
K
-
F
F
---------
T
-------
W
V
K
-
E
----
A
---
D
S
-
S
A
V
S
K
A
F
D
Q
--
I
Y
S
-
V
T
Y
L
K
------
Y
L
-
I
-
E
-
D
Y
-
L
S
L
L
E
S
AHLPTD
Q
L
K
------
S
S
R
--
I
S
-
L
V
V
R
L
-
A
K
---
Y
L
H
E
Q
T
E
L
T
Q
D
V
H
D
E
I
A
V
Y
V
K
-
K
L
W
-
E
M
Q
P
A
E
F
E
E
E
F
L
-
K
K
I
S
PLP
F
I
D
N
T
V
R
I
L
T----
6
PsiBlast_PDB
56.52
30%
-29
- C6 -
1VDC
2
TRXB1_ARATH
A:
[55-134]
------------------------------------------------------------------------------------------------------------------------
T
D
-----
V
E
N
F
P
G
F
P
E
G
-
I
L
----
G
V
E
L
-
T
----
D
K
F
---------
R
K
Q
S
----------------
E
R
F
----------------
G
--------------
T
T
I
F
T
-----------------------
E
T
-
V
----
T
---
K
V
-
D
F
S
S
K
P
F
K
L
--
F
T
D
----
S
K
------
A
I
-
L
---
A
D
-
A
V
I
L
A
I
------
G
A
V
------
A
K
R
--
L
S
-
F
V
G
S
G
-
E
----------------------------------------------------------------
5
PsiBlast_PDB
54.39
31%
-39
* C8 *
3FN9
-
?
A:
[584-650]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
-----
Y
L
T
Q
R
R
N
A
----------------
D
R
E
----------------
K
--------------
R
T
T
A
V
T
V
-
Y
S
---------
N
-------
I
G
T
-
P
----
K
V
Y
L
N
G
-
Q
E
L
S
G
I
R
N
G
--
Y
T
D
-
V
H
Y
V
--------------
F
D
-
N
V
S
L
A
D
------
G
K
N
------
I
L
K
--
A
V
-
V
----------------------------------------------------------------------
16
HHSearch
54.35
12%
-80
- C9 -
2D3Y
4
?
A:
[49-156]
-------------------------------------------------------------------------------------------------------------------
P
E
A
R
I
L
L
-----
F
G
L
A
P
G
A
-
H
G
S
N
R
TGRP
F
T
G
D
A
S
----
G
A
F
-----
L
-
Y
P
L
L
H
E
----------------
A
G
L
----------------
S
SKPESLPGDD
L
R
L
Y
G
V
Y
L
T
A
A
-
V
R
---------
C
-------
A
P
P
-
K
----
N
---
K
P
-
T
---
P
E
E
L
R
--
A
C
A
-
R
W
T
E
V
------
E
L
-
G
L
L
P
E
V
-
R
V
Y
V
A
L
------
G
R
I
------
A
L
E
----------------------------------------------------------------------------
21
HHSearch
54.19
8%
-72
- C9 -
1WYW
3
TDG_HUMAN
A:
[21-127]
-------------------------------------------------------------------------------------------------------------------
F
N
L
D
I
V
I
-----
I
G
I
N
P
G
L
-
M
A
-
A
Y
K
GHH
Y
P
G
P
-
G
-----
N
H
-----
F
W
-
K
C
L
F
M
----------------
S
G
L
SEVQLNHMDDHTLPGK
Y
--------------
G
I
G
F
T
N
M
-
V
E
---------
R
-------
T
T
P
G
S
----
K
---
D
L
-
S
S
---
K
E
F
R
--
E
G
G
-
R
I
L
V
Q
------
K
L
Q
K
-
Y
-
Q
P
-
R
I
A
V
F
N
------
G
K
C
------
I
Y
E
----------------------------------------------------------------------------
7
PsiBlast_PDB
51.03
28%
-48
- C6 -
4E6Y
1
?
A:
[62-118]
------------------------------------------------------------------------------------------------------------------------------------
Y
I
-
D
G
-
G
K
----
G
I
L
L
-
H
----
R
G
Y
-----
P
I
D
Q
L
A
N
N
----------------
A
D
Y
----------------
L
--------------
E
V
C
Y
I
L
L
-
Y
G
---------
E
-------
A
P
T
-
R
----
E
---
Q
Y
-
E
K
F
K
T
T
V
T
R
--
H
T
M
-
V
H
-----------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.38
30%
11
- C6 -
4LG8
6
A:
[82-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
-
T
N
K
I
L
T
------
G
G
A
------
D
K
N
--
V
V
-
V
F
D
K
S
S
E
Q
---
I
L
A
T
L
K
G
H
T
K
K
V
T
S
V
V
F
H
P
S
Q
-
D
L
V
F
S
A
S
P
D
A
----------------------------
14
HHSearch
49.36
8%
-71
- C9 -
1MUG
2
MUG_ECOLI
A:
[8-113]
-------------------------------------------------------------------------------------------------------------------
P
G
L
R
V
V
F
-----
C
G
I
N
P
G
L
-
S
S
-
A
G
TGFP
F
A
H
P
-
A
-----
N
R
-----
F
-
W
K
V
I
Y
Q
----------------
A
G
F
TDRQLKPQEAQHLLD-
Y
--------------
R
C
G
V
T
K
L
-
V
D
---------
R
-------
P
T
V
Q
A
----
N
---
E
V
-
S
K
Q
E
L
H
A
-----
G
G
-
R
K
L
I
E
------
K
I
-
E
D
Y
-
Q
P
-
Q
A
L
A
I
L
------
G
K
Q
------
A
Y
E
----------------------------------------------------------------------------
9
PsiBlast_PDB
48.28
21%
23
- C6 -
3S84
-
APOA4_HUMAN
A:
[41-125]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
-
G
----
D
---
N
L
-
R
E
L
Q
Q
R
L
E
P
--
Y
A
D
-
Q
L
R
T
Q
------
V
N
-
T
-
Q
-
A
E
-
Q
L
R
R
Q
L
------
T
P
Y
------
A
Q
R
M
E
R
V
-
L
R
E
N
A
-
D
S
---
L
Q
A
S
L
R
P
H
A
D
E
L
K
A
K
I
D
Q
N
V
E
-
E
L
K
G
R
L
T
P
Y
A
D
E
--------------------------